Rh2BG169000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0009464
Physical Location & Seq
Forward (+)
14878024 .. 14882124
4101 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG169000.1

Sequence Viewer

Length: 543 bp
ATGTCGGACAGAGAAGATTACGACTCCGACGCGCCGGAGGAGTTCACAGCCGAGCAGGGAATACAACAGGAACAAGAACTGAGTAAGCTTCAGAAAGAGAATAAAGCAAGGGTTGCTCGTGAAGGAAAAGAACGTCGTAGAAAATGGGCCCAGAAGAAAACACCAGGGAAAGCTACTGTTGAAAGTGTTCAAGATGTTTCTGAAAATGAAACACACCAAGAATCTTCCATGGGCACTGCAGGGATGCTTCCTCCTAACATTGTTGAACTACTTGCAGCTCGTGAGAAGCAAGTTTTCTCAGACTCTGAGGATGAGAAGGCTGACTCGAAATCTACTAAGAAGAAGAAAAAACGAAAAAGCTCAGGGGTTGATGCTATTATTCTGAATCAGACAGCTCCTCCTCCATGCTTAGAGAAGTCCTTGGAATTCTTGAAGAAAAGGAAAATGCAGGTCGCCAGATCACAAGCAGTGTTGAACAACTCGAGCCAAGCATTACGATTTCTCACTTCTTCAGGCGTGTTAAGTAAAAAACTGACAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

180

Amino Acids

20.17

Weight (kDa)

9.34

Isoelectric Point (pI)

61.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 439
AccII CGCG 1 cut(s) 32
AcsI RAATTY 1 cut(s) 425
AcuI CTGAAG 2 cut(s) 74, 495
AgsI TTSAA 5 cut(s) 182, 191, 266, 433, 475
AjnI CCWGG 1 cut(s) 163
AluBI AGCT 5 cut(s) 88, 173, 278, 360, 395
AluI AGCT 5 cut(s) 88, 173, 278, 360, 395
AlwNI CAGNNNCTG 1 cut(s) 305
Ama87I CYCGRG 1 cut(s) 481
AoxI GGCC 1 cut(s) 147
ApaI GGGCCC 1 cut(s) 151
ApeKI GCWGC 1 cut(s) 275
ApoI RAATTY 1 cut(s) 425
Asp700I GAANNNNTTC 1 cut(s) 186
AspLEI GCGC 1 cut(s) 34
AspS9I GGNCC 2 cut(s) 147, 148
AvaI CYCGRG 1 cut(s) 481
BaeGI GKGCMC 2 cut(s) 151, 236
BanII GRGCYC 1 cut(s) 151
BauI CACGAG 2 cut(s) 117, 279
BbvI GCAGC 1 cut(s) 287
BciT130I CCWGG 1 cut(s) 165
BfmI CTRYAG 1 cut(s) 237
BfuAI ACCTGC 1 cut(s) 439
BisI GCNGC 1 cut(s) 276
BlsI GCNGC 1 cut(s) 277
Bme1390I CCNGG 1 cut(s) 165
BmeT110I CYCGRG 1 cut(s) 481
BmgT120I GGNCC 2 cut(s) 147, 148
BmiI GGNNCC 1 cut(s) 149
BmrFI CCNGG 1 cut(s) 165
BmsI GCATC 2 cut(s) 234, 361
Bpu10I CCTNAGC 1 cut(s) 361
BsaJI CCNNGG 3 cut(s) 164, 228, 420
BsaXI ACNNNNNCTCC 2 cut(s) 382, 412
BseBI CCWGG 1 cut(s) 165
BseDI CCNNGG 3 cut(s) 164, 228, 420
BseGI GGATG 2 cut(s) 249, 316
BseMII CTCAG 4 cut(s) 71, 297, 312, 375
BseRI GAGGAG 3 cut(s) 53, 387, 390
BseSI GKGCMC 2 cut(s) 151, 236
BseXI GCAGC 1 cut(s) 287
Bsh1236I CGCG 1 cut(s) 32
BshFI GGCC 1 cut(s) 149
BsiHKCI CYCGRG 1 cut(s) 481
BsiSI CCGG 1 cut(s) 35
BsnI GGCC 1 cut(s) 149
BsoBI CYCGRG 1 cut(s) 481
Bsp120I GGGCCC 1 cut(s) 147
Bsp1286I GDGCHC 2 cut(s) 151, 236
Bsp143I GATC 1 cut(s) 458
Bsp19I CCATGG 1 cut(s) 228
BspANI GGCC 1 cut(s) 149
BspCNI CTCAG 4 cut(s) 72, 298, 311, 374
BspFNI CGCG 1 cut(s) 32
BspLI GGNNCC 1 cut(s) 149
BspMAI CTGCAG 1 cut(s) 241
BspMI ACCTGC 1 cut(s) 439
BssECI CCNNGG 3 cut(s) 164, 228, 420
BssMI GATC 1 cut(s) 458
BssSI CACGAG 2 cut(s) 117, 279
BssT1I CCWWGG 2 cut(s) 228, 420
Bst2BI CACGAG 2 cut(s) 117, 279
Bst2UI CCWGG 1 cut(s) 165
Bst4CI ACNGT 1 cut(s) 178
BstAPI GCANNNNNTGC 1 cut(s) 113
BstDEI CTNAG 6 cut(s) 80, 298, 306, 336, 361, 409
BstDSI CCRYGG 1 cut(s) 228
BstF5I GGATG 2 cut(s) 249, 316
BstFNI CGCG 1 cut(s) 32
BstHHI GCGC 1 cut(s) 34
BstKTI GATC 1 cut(s) 461
BstMBI GATC 1 cut(s) 458
BstMWI GCNNNNNNNGC 1 cut(s) 113
BstNI CCWGG 1 cut(s) 165
BstSCI CCNGG 1 cut(s) 163
BstSFI CTRYAG 1 cut(s) 237
BstSLI GKGCMC 2 cut(s) 151, 236
BstUI CGCG 1 cut(s) 32
BstV1I GCAGC 1 cut(s) 287
BsuRI GGCC 1 cut(s) 149
BtgI CCRYGG 1 cut(s) 228
BtsCI GGATG 2 cut(s) 249, 316
BtsI GCAGTG 2 cut(s) 234, 474
BtsIMutI CAGTG 2 cut(s) 234, 474
BveI ACCTGC 1 cut(s) 439
CaiI CAGNNNCTG 1 cut(s) 305
CfoI GCGC 1 cut(s) 34
Cfr13I GGNCC 2 cut(s) 147, 148
CseI GACGC 1 cut(s) 38
CviAII CATG 2 cut(s) 229, 405
CviJI RGCY 9 cut(s) 50, 88, 149, 173, 278, 320, 360, 395, 486
CviKI_1 RGCY 9 cut(s) 50, 88, 149, 173, 278, 320, 360, 395, 486
DdeI CTNAG 6 cut(s) 80, 298, 306, 336, 361, 409
DpnI GATC 1 cut(s) 460
DpnII GATC 1 cut(s) 458
Eco130I CCWWGG 2 cut(s) 228, 420
Eco24I GRGCYC 1 cut(s) 151
Eco57I CTGAAG 2 cut(s) 74, 495
Eco88I CYCGRG 1 cut(s) 481
EcoRI GAATTC 1 cut(s) 425
EcoRII CCWGG 1 cut(s) 163
EcoT14I CCWWGG 2 cut(s) 228, 420
EcoT38I GRGCYC 1 cut(s) 151
ErhI CCWWGG 2 cut(s) 228, 420
FaeI CATG 2 cut(s) 232, 408
FaiI YATR 2 cut(s) 230, 406
FatI CATG 2 cut(s) 228, 404
Fnu4HI GCNGC 1 cut(s) 276
FokI GGATG 2 cut(s) 256, 323
FriOI GRGCYC 1 cut(s) 151
Fsp4HI GCNGC 1 cut(s) 276
GlaI GCGC 1 cut(s) 33
GluI GCNGC 1 cut(s) 276
HaeIII GGCC 1 cut(s) 149
HapII CCGG 1 cut(s) 35
HgaI GACGC 1 cut(s) 38
HhaI GCGC 1 cut(s) 34
Hin1II CATG 2 cut(s) 232, 408
Hin6I GCGC 1 cut(s) 32
HinP1I GCGC 1 cut(s) 32
HindIII AAGCTT 1 cut(s) 86
HinfI GANTC 5 cut(s) 23, 221, 302, 323, 385
HpaII CCGG 1 cut(s) 35
Hpy166II GTNNAC 1 cut(s) 45
Hpy188I TCNGA 8 cut(s) 7, 28, 93, 202, 301, 307, 384, 390
Hpy188III TCNNGA 4 cut(s) 119, 191, 281, 430
Hpy8I GTNNAC 1 cut(s) 45
Hpy99I CGWCG 2 cut(s) 32, 138
HpyAV CCTTC 2 cut(s) 116, 310
HpyCH4III ACNGT 1 cut(s) 178
HpyCH4IV ACGT 1 cut(s) 133
HpyCH4V TGCA 3 cut(s) 239, 275, 448
HpyF10VI GCNNNNNNNGC 1 cut(s) 113
HpyF3I CTNAG 6 cut(s) 80, 298, 306, 336, 361, 409
HpySE526I ACGT 1 cut(s) 133
Hsp92II CATG 2 cut(s) 232, 408
HspAI GCGC 1 cut(s) 32
Kzo9I GATC 1 cut(s) 458
LmnI GCTCC 1 cut(s) 400
Lsp1109I GCAGC 1 cut(s) 287
LweI GCATC 2 cut(s) 234, 361
MaeII ACGT 1 cut(s) 133
MalI GATC 1 cut(s) 460
MboI GATC 1 cut(s) 458
MboII GAAGA 7 cut(s) 26, 166, 216, 352, 355, 445, 501
MhlI GDGCHC 2 cut(s) 151, 236
MluCI AATT 1 cut(s) 425
MlyI GAGTC 3 cut(s) 17, 296, 317
MmeI TCCRAC 1 cut(s) 51
MnlI CCTC 5 cut(s) 31, 261, 301, 408, 411
MroXI GAANNNNTTC 1 cut(s) 186
MseI TTAA 1 cut(s) 521
MspI CCGG 1 cut(s) 35
MspR9I CCNGG 1 cut(s) 165
MvaI CCWGG 1 cut(s) 165
MvnI CGCG 1 cut(s) 32
MwoI GCNNNNNNNGC 1 cut(s) 113
NcoI CCATGG 1 cut(s) 228
NdeII GATC 1 cut(s) 458
NlaIII CATG 2 cut(s) 232, 408
NlaIV GGNNCC 1 cut(s) 149
NmeAIII GCCGAG 1 cut(s) 76
PaeR7I CTCGAG 1 cut(s) 481
PdmI GAANNNNTTC 1 cut(s) 186
PfeI GAWTC 2 cut(s) 221, 385
PkrI GCNGC 1 cut(s) 277
PleI GAGTC 3 cut(s) 17, 296, 317
PpsI GAGTC 3 cut(s) 17, 296, 317
Psp6I CCWGG 1 cut(s) 163
PspGI CCWGG 1 cut(s) 163
PspN4I GGNNCC 1 cut(s) 149
PspOMI GGGCCC 1 cut(s) 147
PspPI GGNCC 2 cut(s) 147, 148
PspXI VCTCGAGB 1 cut(s) 481
PstI CTGCAG 1 cut(s) 241
PstNI CAGNNNCTG 1 cut(s) 305
SaqAI TTAA 1 cut(s) 521
SatI GCNGC 1 cut(s) 276
Sau3AI GATC 1 cut(s) 458
Sau96I GGNCC 2 cut(s) 147, 148
SchI GAGTC 3 cut(s) 17, 296, 317
ScrFI CCNGG 1 cut(s) 165
SduI GDGCHC 2 cut(s) 151, 236
SetI ASST 7 cut(s) 90, 136, 175, 280, 362, 397, 453
SfaNI GCATC 2 cut(s) 234, 361
SfcI CTRYAG 1 cut(s) 237
Sfr274I CTCGAG 1 cut(s) 481
SlaI CTCGAG 1 cut(s) 481
SmlI CTYRAG 1 cut(s) 481
SmoI CTYRAG 1 cut(s) 481
Sse9I AATT 1 cut(s) 425
StyD4I CCNGG 1 cut(s) 163
StyI CCWWGG 2 cut(s) 228, 420
TaaI ACNGT 1 cut(s) 178
TaiI ACGT 1 cut(s) 136
TaqI TCGA 2 cut(s) 326, 482
TasI AATT 1 cut(s) 425
TfiI GAWTC 2 cut(s) 221, 385
Tru1I TTAA 1 cut(s) 521
Tru9I TTAA 1 cut(s) 521
TscAI CASTG 2 cut(s) 241, 474
TseI GCWGC 1 cut(s) 275
TspDTI ATGAA 1 cut(s) 222
TspRI CASTG 2 cut(s) 241, 474
XapI RAATTY 1 cut(s) 425
XhoI CTCGAG 1 cut(s) 481
XmnI GAANNNNTTC 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.