Rh6AG014000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0009464
Physical Location & Seq
Reverse (-)
1478564 .. 1478926
363 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG014000.1

Sequence Viewer

Length: 363 bp
ATGTCGGACAGAGAAGATTACGACTCCGACGCGCCGGAGGAGTTCACAGCCGAGCAGGGAATACAACAGGAACAAGAACTGAGTAAGCTTCAGAAAGGGAATAAGGCGAGGGTTGCTCGTGAAGGAAAAGAACGTCGTAGAAAATGGGCCCAGAAGAAAACACCACGGAAAGCTACTGTTGAAAGTGTTCAAGATGTTTCTGAAAATGAAACACACCAAGAATCTTCCATGGGCACTGCAGGGATGCTTCCTCCTAACATTGTTGAACTACTTGCAGCTCGTGAGAAGCAAGTTTTCTCAGACTCTGAGGATGAGAAGGCTGACTCGAAATCTACTAAGAAGAAGAAAAAACGAAAAGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

120

Amino Acids

13.71

Weight (kDa)

7.88

Isoelectric Point (pI)

65.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 32
AcuI CTGAAG 1 cut(s) 74
AgsI TTSAA 3 cut(s) 182, 191, 266
AluBI AGCT 3 cut(s) 88, 173, 278
AluI AGCT 3 cut(s) 88, 173, 278
AlwNI CAGNNNCTG 1 cut(s) 305
AoxI GGCC 1 cut(s) 147
ApaI GGGCCC 1 cut(s) 151
ApeKI GCWGC 1 cut(s) 275
Asp700I GAANNNNTTC 1 cut(s) 186
AspLEI GCGC 1 cut(s) 34
AspS9I GGNCC 2 cut(s) 147, 148
BaeGI GKGCMC 2 cut(s) 151, 236
BanII GRGCYC 1 cut(s) 151
BauI CACGAG 2 cut(s) 117, 279
BbvI GCAGC 1 cut(s) 287
BfmI CTRYAG 1 cut(s) 237
BisI GCNGC 1 cut(s) 276
BlsI GCNGC 1 cut(s) 277
BmgT120I GGNCC 2 cut(s) 147, 148
BmiI GGNNCC 1 cut(s) 149
BmsI GCATC 1 cut(s) 234
BplI GAGNNNNNCTC 2 cut(s) 100, 132
BsaJI CCNNGG 2 cut(s) 164, 228
BseDI CCNNGG 2 cut(s) 164, 228
BseGI GGATG 2 cut(s) 249, 316
BseMII CTCAG 3 cut(s) 71, 297, 312
BseRI GAGGAG 1 cut(s) 53
BseSI GKGCMC 2 cut(s) 151, 236
BseXI GCAGC 1 cut(s) 287
Bsh1236I CGCG 1 cut(s) 32
BshFI GGCC 1 cut(s) 149
BsiSI CCGG 1 cut(s) 35
BsnI GGCC 1 cut(s) 149
Bsp120I GGGCCC 1 cut(s) 147
Bsp1286I GDGCHC 2 cut(s) 151, 236
Bsp19I CCATGG 1 cut(s) 228
BspANI GGCC 1 cut(s) 149
BspCNI CTCAG 3 cut(s) 72, 298, 311
BspFNI CGCG 1 cut(s) 32
BspLI GGNNCC 1 cut(s) 149
BspMAI CTGCAG 1 cut(s) 241
BssECI CCNNGG 2 cut(s) 164, 228
BssSI CACGAG 2 cut(s) 117, 279
BssT1I CCWWGG 1 cut(s) 228
Bst2BI CACGAG 2 cut(s) 117, 279
Bst4CI ACNGT 1 cut(s) 178
BstDEI CTNAG 4 cut(s) 80, 298, 306, 336
BstDSI CCRYGG 2 cut(s) 164, 228
BstF5I GGATG 2 cut(s) 249, 316
BstFNI CGCG 1 cut(s) 32
BstHHI GCGC 1 cut(s) 34
BstMWI GCNNNNNNNGC 1 cut(s) 113
BstSFI CTRYAG 1 cut(s) 237
BstSLI GKGCMC 2 cut(s) 151, 236
BstUI CGCG 1 cut(s) 32
BstV1I GCAGC 1 cut(s) 287
BsuRI GGCC 1 cut(s) 149
BtgI CCRYGG 2 cut(s) 164, 228
BtsCI GGATG 2 cut(s) 249, 316
BtsI GCAGTG 1 cut(s) 234
BtsIMutI CAGTG 1 cut(s) 234
CaiI CAGNNNCTG 1 cut(s) 305
CfoI GCGC 1 cut(s) 34
Cfr13I GGNCC 2 cut(s) 147, 148
CseI GACGC 1 cut(s) 38
CviAII CATG 1 cut(s) 229
CviJI RGCY 6 cut(s) 50, 88, 149, 173, 278, 320
CviKI_1 RGCY 6 cut(s) 50, 88, 149, 173, 278, 320
DdeI CTNAG 4 cut(s) 80, 298, 306, 336
Eco130I CCWWGG 1 cut(s) 228
Eco24I GRGCYC 1 cut(s) 151
Eco57I CTGAAG 1 cut(s) 74
EcoT14I CCWWGG 1 cut(s) 228
EcoT38I GRGCYC 1 cut(s) 151
ErhI CCWWGG 1 cut(s) 228
FaeI CATG 1 cut(s) 232
FaiI YATR 1 cut(s) 230
FatI CATG 1 cut(s) 228
Fnu4HI GCNGC 1 cut(s) 276
FokI GGATG 2 cut(s) 256, 323
FriOI GRGCYC 1 cut(s) 151
Fsp4HI GCNGC 1 cut(s) 276
GlaI GCGC 1 cut(s) 33
GluI GCNGC 1 cut(s) 276
HaeIII GGCC 1 cut(s) 149
HapII CCGG 1 cut(s) 35
HgaI GACGC 1 cut(s) 38
HhaI GCGC 1 cut(s) 34
Hin1II CATG 1 cut(s) 232
Hin6I GCGC 1 cut(s) 32
HinP1I GCGC 1 cut(s) 32
HindIII AAGCTT 1 cut(s) 86
HinfI GANTC 4 cut(s) 23, 221, 302, 323
HpaII CCGG 1 cut(s) 35
Hpy166II GTNNAC 1 cut(s) 45
Hpy188I TCNGA 6 cut(s) 7, 28, 93, 202, 301, 307
Hpy188III TCNNGA 3 cut(s) 119, 191, 281
Hpy8I GTNNAC 1 cut(s) 45
Hpy99I CGWCG 2 cut(s) 32, 138
HpyAV CCTTC 2 cut(s) 116, 310
HpyCH4III ACNGT 1 cut(s) 178
HpyCH4IV ACGT 1 cut(s) 133
HpyCH4V TGCA 2 cut(s) 239, 275
HpyF10VI GCNNNNNNNGC 1 cut(s) 113
HpyF3I CTNAG 4 cut(s) 80, 298, 306, 336
HpySE526I ACGT 1 cut(s) 133
Hsp92II CATG 1 cut(s) 232
HspAI GCGC 1 cut(s) 32
LpnPI CCDG 5 cut(s) 41, 48, 53, 164, 225
Lsp1109I GCAGC 1 cut(s) 287
LweI GCATC 1 cut(s) 234
MaeII ACGT 1 cut(s) 133
MboII GAAGA 5 cut(s) 26, 166, 216, 352, 355
MhlI GDGCHC 2 cut(s) 151, 236
MlyI GAGTC 3 cut(s) 17, 296, 317
MmeI TCCRAC 1 cut(s) 51
MnlI CCTC 4 cut(s) 31, 102, 261, 301
MroXI GAANNNNTTC 1 cut(s) 186
MspI CCGG 1 cut(s) 35
MvnI CGCG 1 cut(s) 32
MwoI GCNNNNNNNGC 1 cut(s) 113
NcoI CCATGG 1 cut(s) 228
NlaIII CATG 1 cut(s) 232
NlaIV GGNNCC 1 cut(s) 149
NmeAIII GCCGAG 1 cut(s) 76
PdmI GAANNNNTTC 1 cut(s) 186
PfeI GAWTC 1 cut(s) 221
PkrI GCNGC 1 cut(s) 277
PleI GAGTC 3 cut(s) 17, 296, 317
PpsI GAGTC 3 cut(s) 17, 296, 317
PspN4I GGNNCC 1 cut(s) 149
PspOMI GGGCCC 1 cut(s) 147
PspPI GGNCC 2 cut(s) 147, 148
PstI CTGCAG 1 cut(s) 241
PstNI CAGNNNCTG 1 cut(s) 305
SatI GCNGC 1 cut(s) 276
Sau96I GGNCC 2 cut(s) 147, 148
SchI GAGTC 3 cut(s) 17, 296, 317
SduI GDGCHC 2 cut(s) 151, 236
SetI ASST 4 cut(s) 90, 136, 175, 280
SfaNI GCATC 1 cut(s) 234
SfcI CTRYAG 1 cut(s) 237
StyI CCWWGG 1 cut(s) 228
TaaI ACNGT 1 cut(s) 178
TaiI ACGT 1 cut(s) 136
TaqI TCGA 1 cut(s) 326
TfiI GAWTC 1 cut(s) 221
TscAI CASTG 1 cut(s) 241
TseI GCWGC 1 cut(s) 275
TspDTI ATGAA 1 cut(s) 222
TspGWI ACGGA 1 cut(s) 181
TspRI CASTG 1 cut(s) 241
XmnI GAANNNNTTC 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.