Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0009464

Physical Location & Seq

Genomic Coordinates Forward (+)

14268274 .. 14269898

Gene Structure 1625 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017221

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGTCGGACGGAGAAGATTACGACTCCGACGCGCCGGAGGAGTTCACAGCCGAGCAGGGAATACAACAGGAACAAGAACTGAGTAAGCTTCAGAAAGAGAATAAGGCGAGGGTTGCTCGTGAAGGAAAAGAACGTCGTAGAAAGTGGGCCCAGAAGAAAACACCACGGAAGGCTACTGTTGAAAGTGTTCAAGATGTTTCTGAAAATGAAACACCCCAAGAATCTTCTATGGGCACAGCAGGGATGCTTCCTCCTAACATTGTTGAACTACTTGCAGCTCGTGAGAAGCAAGTTTTCTCAGACTCAGAGGATGAGAAGGCTGACTTGAAGTCTACTAAGAAGAAGAAAAAACGAAAAAGCTCAGGGGTTGATACAATTATTCTGAATCAGACAGCTCCTCCTCCATGCTTACAGAAGTCCTTGGAATTCTTGAAGAAAAGGAAAATGCAGGTCCCCAGATCACAAGCAGTGTTGAACAACTCAAACCAAGCATTACGCTTTCTCACTTCTTCAGGCGTGTTGAGTAAAAAACTGACAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

181

Amino Acids

20.23

Weight (kDa)

9.45

Isoelectric Point (pI)

60.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009464)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37090 AT4G37090
fragaria_vesca	FvH4_1g14550
malus_domestica	MD00G1067500.v1.1 MD02G1159200.v1.1
prunus_persica	Prupe.7G145000_v2.0.a1 Prupe.7G145000_v2.0.a1
pyrus_communis	pycom02g12540
rosa_chinensis	RchiOBHm_Chr2g0103301
rosa_laevigata	RLG00000017221
rosa_multiflora	Rmu_sc0006743.1_g000007 Rmu_sc0007612.1_g000039
rosa_roxburghii	Rroxscaffold_2G00139760
rosa_rugosa	Rorug02G0113300
rosa_samantha	Rh2AG162000 Rh2BG169000 Rh2CG168900 Rh2DG167800 Rh6AG014000 Rh6BG012600
rosa_wichuraiana	Rw0G019390 Rw2G012720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	439
AccI	GTMKAC	1 cut(s)	332
AccII	CGCG	1 cut(s)	32
AcsI	RAATTY	1 cut(s)	425
AcuI	CTGAAG	2 cut(s)	74, 495
AgsI	TTSAA	6 cut(s)	182, 191, 266, 328, 433, 475
AhdI	GACNNNNNGTC	1 cut(s)	328
AluBI	AGCT	4 cut(s)	88, 278, 360, 395
AluI	AGCT	4 cut(s)	88, 278, 360, 395
AoxI	GGCC	1 cut(s)	147
ApaI	GGGCCC	1 cut(s)	151
ApeKI	GCWGC	1 cut(s)	275
ApoI	RAATTY	1 cut(s)	425
Asp700I	GAANNNNTTC	1 cut(s)	186
AspLEI	GCGC	1 cut(s)	34
AspS9I	GGNCC	3 cut(s)	147, 148, 451
AvaII	GGWCC	1 cut(s)	451
BaeGI	GKGCMC	2 cut(s)	151, 236
BanII	GRGCYC	1 cut(s)	151
BauI	CACGAG	2 cut(s)	117, 279
BbvI	GCAGC	1 cut(s)	287
BfuAI	ACCTGC	1 cut(s)	439
BisI	GCNGC	1 cut(s)	276
BlsI	GCNGC	1 cut(s)	277
Bme18I	GGWCC	1 cut(s)	451
BmeRI	GACNNNNNGTC	1 cut(s)	328
BmgT120I	GGNCC	3 cut(s)	147, 148, 451
BmiI	GGNNCC	2 cut(s)	149, 453
BmsI	GCATC	1 cut(s)	234
BplI	GAGNNNNNCTC	2 cut(s)	100, 132
Bpu10I	CCTNAGC	1 cut(s)	361
BsaJI	CCNNGG	2 cut(s)	164, 420
BsaXI	ACNNNNNCTCC	2 cut(s)	382, 412
BseDI	CCNNGG	2 cut(s)	164, 420
BseGI	GGATG	2 cut(s)	249, 316
BseMII	CTCAG	4 cut(s)	71, 312, 318, 375
BseRI	GAGGAG	3 cut(s)	53, 387, 390
BseSI	GKGCMC	2 cut(s)	151, 236
BseXI	GCAGC	1 cut(s)	287
Bsh1236I	CGCG	1 cut(s)	32
BshFI	GGCC	1 cut(s)	149
BsiSI	CCGG	1 cut(s)	35
BslFI	GGGAC	1 cut(s)	437
BsmFI	GGGAC	1 cut(s)	437
BsnI	GGCC	1 cut(s)	149
Bsp120I	GGGCCC	1 cut(s)	147
Bsp1286I	GDGCHC	2 cut(s)	151, 236
Bsp143I	GATC	1 cut(s)	458
BspANI	GGCC	1 cut(s)	149
BspCNI	CTCAG	4 cut(s)	72, 311, 317, 374
BspFNI	CGCG	1 cut(s)	32
BspLI	GGNNCC	2 cut(s)	149, 453
BspMI	ACCTGC	1 cut(s)	439
BssECI	CCNNGG	2 cut(s)	164, 420
BssMI	GATC	1 cut(s)	458
BssSI	CACGAG	2 cut(s)	117, 279
BssT1I	CCWWGG	1 cut(s)	420
Bst2BI	CACGAG	2 cut(s)	117, 279
Bst4CI	ACNGT	1 cut(s)	178
BstDEI	CTNAG	5 cut(s)	80, 298, 304, 336, 361
BstDSI	CCRYGG	1 cut(s)	164
BstF5I	GGATG	2 cut(s)	249, 316
BstFNI	CGCG	1 cut(s)	32
BstHHI	GCGC	1 cut(s)	34
BstKTI	GATC	1 cut(s)	461
BstMBI	GATC	1 cut(s)	458
BstMWI	GCNNNNNNNGC	1 cut(s)	113
BstSLI	GKGCMC	2 cut(s)	151, 236
BstUI	CGCG	1 cut(s)	32
BstV1I	GCAGC	1 cut(s)	287
BsuRI	GGCC	1 cut(s)	149
BtgI	CCRYGG	1 cut(s)	164
BtsCI	GGATG	2 cut(s)	249, 316
BtsI	GCAGTG	1 cut(s)	474
BtsIMutI	CAGTG	1 cut(s)	474
BveI	ACCTGC	1 cut(s)	439
CfoI	GCGC	1 cut(s)	34
Cfr13I	GGNCC	3 cut(s)	147, 148, 451
CseI	GACGC	1 cut(s)	38
CviAII	CATG	1 cut(s)	405
CviJI	RGCY	8 cut(s)	50, 88, 149, 173, 278, 320, 360, 395
CviKI_1	RGCY	8 cut(s)	50, 88, 149, 173, 278, 320, 360, 395
DdeI	CTNAG	5 cut(s)	80, 298, 304, 336, 361
DpnI	GATC	1 cut(s)	460
DpnII	GATC	1 cut(s)	458
DriI	GACNNNNNGTC	1 cut(s)	328
Eam1105I	GACNNNNNGTC	1 cut(s)	328
Eco130I	CCWWGG	1 cut(s)	420
Eco24I	GRGCYC	1 cut(s)	151
Eco47I	GGWCC	1 cut(s)	451
Eco57I	CTGAAG	2 cut(s)	74, 495
EcoO109I	RGGNCCY	1 cut(s)	451
EcoRI	GAATTC	1 cut(s)	425
EcoT14I	CCWWGG	1 cut(s)	420
EcoT38I	GRGCYC	1 cut(s)	151
ErhI	CCWWGG	1 cut(s)	420
FaeI	CATG	1 cut(s)	408
FaiI	YATR	2 cut(s)	230, 406
FalI	AAGNNNNNCTT	2 cut(s)	308, 340
FaqI	GGGAC	1 cut(s)	437
FatI	CATG	1 cut(s)	404
FblI	GTMKAC	1 cut(s)	332
Fnu4HI	GCNGC	1 cut(s)	276
FokI	GGATG	2 cut(s)	256, 323
FriOI	GRGCYC	1 cut(s)	151
Fsp4HI	GCNGC	1 cut(s)	276
GlaI	GCGC	1 cut(s)	33
GluI	GCNGC	1 cut(s)	276
HaeIII	GGCC	1 cut(s)	149
HapII	CCGG	1 cut(s)	35
HgaI	GACGC	1 cut(s)	38
HhaI	GCGC	1 cut(s)	34
Hin1II	CATG	1 cut(s)	408
Hin6I	GCGC	1 cut(s)	32
HinP1I	GCGC	1 cut(s)	32
HindIII	AAGCTT	1 cut(s)	86
HinfI	GANTC	4 cut(s)	23, 221, 302, 385
HpaII	CCGG	1 cut(s)	35
Hpy166II	GTNNAC	2 cut(s)	45, 333
Hpy188I	TCNGA	8 cut(s)	7, 28, 93, 202, 301, 307, 384, 390
Hpy188III	TCNNGA	4 cut(s)	119, 191, 281, 430
Hpy8I	GTNNAC	2 cut(s)	45, 333
Hpy99I	CGWCG	2 cut(s)	32, 138
HpyAV	CCTTC	3 cut(s)	116, 163, 310
HpyCH4III	ACNGT	1 cut(s)	178
HpyCH4IV	ACGT	1 cut(s)	133
HpyCH4V	TGCA	2 cut(s)	275, 448
HpyF10VI	GCNNNNNNNGC	1 cut(s)	113
HpyF3I	CTNAG	5 cut(s)	80, 298, 304, 336, 361
HpySE526I	ACGT	1 cut(s)	133
Hsp92II	CATG	1 cut(s)	408
HspAI	GCGC	1 cut(s)	32
Kzo9I	GATC	1 cut(s)	458
LmnI	GCTCC	1 cut(s)	400
LpnPI	CCDG	9 cut(s)	41, 48, 53, 164, 225, 348, 434, 469, 498
Lsp1109I	GCAGC	1 cut(s)	287
LweI	GCATC	1 cut(s)	234
MaeII	ACGT	1 cut(s)	133
MalI	GATC	1 cut(s)	460
MboI	GATC	1 cut(s)	458
MboII	GAAGA	7 cut(s)	26, 166, 216, 352, 355, 445, 501
MhlI	GDGCHC	2 cut(s)	151, 236
MluCI	AATT	2 cut(s)	375, 425
MlyI	GAGTC	2 cut(s)	17, 296
MmeI	TCCRAC	1 cut(s)	51
MnlI	CCTC	6 cut(s)	31, 102, 261, 301, 408, 411
MroXI	GAANNNNTTC	1 cut(s)	186
MspI	CCGG	1 cut(s)	35
MvnI	CGCG	1 cut(s)	32
MwoI	GCNNNNNNNGC	1 cut(s)	113
NdeII	GATC	1 cut(s)	458
NlaIII	CATG	1 cut(s)	408
NlaIV	GGNNCC	2 cut(s)	149, 453
NmeAIII	GCCGAG	1 cut(s)	76
PdmI	GAANNNNTTC	1 cut(s)	186
PfeI	GAWTC	2 cut(s)	221, 385
PkrI	GCNGC	1 cut(s)	277
PleI	GAGTC	2 cut(s)	17, 296
PpsI	GAGTC	2 cut(s)	17, 296
PpuMI	RGGWCCY	1 cut(s)	451
Psp5II	RGGWCCY	1 cut(s)	451
PspN4I	GGNNCC	2 cut(s)	149, 453
PspOMI	GGGCCC	1 cut(s)	147
PspPI	GGNCC	3 cut(s)	147, 148, 451
PspPPI	RGGWCCY	1 cut(s)	451
SatI	GCNGC	1 cut(s)	276
Sau3AI	GATC	1 cut(s)	458
Sau96I	GGNCC	3 cut(s)	147, 148, 451
SchI	GAGTC	2 cut(s)	17, 296
SduI	GDGCHC	2 cut(s)	151, 236
SetI	ASST	6 cut(s)	90, 136, 280, 362, 397, 453
SfaNI	GCATC	1 cut(s)	234
SinI	GGWCC	1 cut(s)	451
Sse9I	AATT	2 cut(s)	375, 425
StyI	CCWWGG	1 cut(s)	420
TaaI	ACNGT	1 cut(s)	178
TaiI	ACGT	1 cut(s)	136
TasI	AATT	2 cut(s)	375, 425
TfiI	GAWTC	2 cut(s)	221, 385
TscAI	CASTG	1 cut(s)	474
TseI	GCWGC	1 cut(s)	275
TspDTI	ATGAA	1 cut(s)	222
TspGWI	ACGGA	2 cut(s)	24, 181
TspRI	CASTG	1 cut(s)	474
VpaK11BI	GGWCC	1 cut(s)	451
XapI	RAATTY	1 cut(s)	425
XmiI	GTMKAC	1 cut(s)	332
XmnI	GAANNNNTTC	1 cut(s)	186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.