AT4G38100

Protein CURVATURE THYLAKOID 1D

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0014374
Physical Location & Seq
Reverse (-)
17886869 .. 17888237
1369 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G38100.2

Sequence Viewer

Length: 582 bp
ATGGAGCTCTGCACCAGGTCTACCACAATCATCACTCATCTCCCTGCGAGCTTCAACGGCCATGGATATCTAGCGGGAAAATCTGTTGATAGAATCTCACTTCCTCTCCAGCGAAACGTTGCGTCTCTCGTTCTTCAATCCCGCACGTTGCGTTGTAGTAGAAAGTTTCCAGGAGAAACAGTTACTGAAGAAACATCAACAGGAGTCAATGAGTTTGGTGTGGAGGATCGTGATGGAGTAGTTGTTGCAGCCGAAGAGAAAAACTCGAATAGTGAAGCTCCTCAAGCTGAAGATGAGGAAACTCAAGCCCTAGAGTTTTTGAACGATATTAAGCTGGACTCAGACAAGACATATTCAATCCTGCTCTATGGGAGTGGTGCGATAGTTGCTCTCTACTTAACGTCTGCAATCGTCAGTTCACTCGAAGCAATCCCTCTGTTTCCTAAGCTAATGGAAGTAGTTGGTCTCGGATACACACTCTGGTTCACTACCCGTTATCTGCTATTTAAGAGGAACAGAGAAGAACTCAAGACAAAAGTTAGTGAAATCAAAAAGCAGGTTCTTGGGTCTGATAGTGAGTGA

Protein Analysis

193

Amino Acids

21.35

Weight (kDa)

5.12

Isoelectric Point (pI)

39.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAAD PF14159 73 - 149 3.7e-24 CAAD domains of cyanobacterial aminoacyl-tRNA synthetase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014374)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38100 AT4G38100
fragaria_vesca FvH4_1g19890
malus_domestica MD15G1315100.v1.1
prunus_persica Prupe.6G196600_v2.0.a1
pyrus_communis pycom15g27840
rosa_chinensis RchiOBHm_Chr2g0111711
rosa_laevigata RLG00000017919
rosa_multiflora Rmu_sc0000448.1_g000011
rosa_roxburghii Rroxscaffold_2G00132150
rosa_rugosa Rorug02G0175600 Rorug02G0175700
rosa_samantha Rh2AG228600 Rh2BG240900 Rh2CG232000 Rh2DG236600
rosa_wichuraiana Rw2G017660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 547
AccI GTMKAC 1 cut(s) 20
AciI CCGC 2 cut(s) 74, 142
AclI AACGTT 1 cut(s) 117
AclWI GGATC 1 cut(s) 234
AcoI YGGCCR 1 cut(s) 58
AcuI CTGAAG 2 cut(s) 207, 309
AgsI TTSAA 4 cut(s) 55, 137, 322, 357
AjnI CCWGG 2 cut(s) 14, 169
AluBI AGCT 6 cut(s) 7, 51, 278, 287, 334, 448
AluI AGCT 6 cut(s) 7, 51, 278, 287, 334, 448
Alw21I GWGCWC 1 cut(s) 9
Alw26I GTCTC 2 cut(s) 129, 470
AlwI GGATC 1 cut(s) 234
AlwNI CAGNNNCTG 1 cut(s) 185
AoxI GGCC 1 cut(s) 58
ApeKI GCWGC 1 cut(s) 248
BanII GRGCYC 1 cut(s) 9
Bbv12I GWGCWC 1 cut(s) 9
BbvI GCAGC 1 cut(s) 260
BccI CCATC 1 cut(s) 227
BceAI ACGGC 1 cut(s) 73
BciT130I CCWGG 2 cut(s) 16, 171
BciVI GTATCC 1 cut(s) 464
BcoDI GTCTC 2 cut(s) 129, 470
BfaI CTAG 2 cut(s) 71, 311
BfuAI ACCTGC 1 cut(s) 547
BfuI GTATCC 1 cut(s) 464
BisI GCNGC 1 cut(s) 249
BlsI GCNGC 1 cut(s) 250
Bme1390I CCNGG 2 cut(s) 16, 171
BmrFI CCNGG 2 cut(s) 16, 171
BplI GAGNNNNNCTC 4 cut(s) 248, 280, 510, 542
BpmI CTGGAG 1 cut(s) 92
Bpu10I CCTNAGC 1 cut(s) 444
BpuEI CTTGAG 3 cut(s) 267, 288, 512
BsaI GGTCTC 1 cut(s) 470
BsaJI CCNNGG 1 cut(s) 61
BsaXI ACNNNNNCTCC 6 cut(s) 90, 120, 165, 195, 228, 258
BseBI CCWGG 2 cut(s) 16, 171
BseDI CCNNGG 1 cut(s) 61
BseMII CTCAG 1 cut(s) 354
BseRI GAGGAG 1 cut(s) 270
BseXI GCAGC 1 cut(s) 260
BshFI GGCC 1 cut(s) 60
BsiHKAI GWGCWC 1 cut(s) 9
BsmAI GTCTC 2 cut(s) 129, 470
BsmBI CGTCTC 1 cut(s) 129
BsnI GGCC 1 cut(s) 60
Bso31I GGTCTC 1 cut(s) 470
Bsp1286I GDGCHC 1 cut(s) 9
Bsp143I GATC 1 cut(s) 226
Bsp19I CCATGG 1 cut(s) 61
BspACI CCGC 2 cut(s) 74, 142
BspANI GGCC 1 cut(s) 60
BspCNI CTCAG 1 cut(s) 353
BspMI ACCTGC 1 cut(s) 547
BspPI GGATC 1 cut(s) 234
BspTNI GGTCTC 1 cut(s) 470
BssECI CCNNGG 1 cut(s) 61
BssMI GATC 1 cut(s) 226
BssT1I CCWWGG 1 cut(s) 61
Bst2UI CCWGG 2 cut(s) 16, 171
Bst4CI ACNGT 1 cut(s) 181
Bst6I CTCTTC 1 cut(s) 249
BstC8I GCNNGC 1 cut(s) 49
BstDEI CTNAG 2 cut(s) 340, 444
BstDSI CCRYGG 1 cut(s) 61
BstKTI GATC 1 cut(s) 229
BstMAI GTCTC 2 cut(s) 129, 470
BstMBI GATC 1 cut(s) 226
BstMWI GCNNNNNNNGC 3 cut(s) 57, 284, 386
BstNI CCWGG 2 cut(s) 16, 171
BstSCI CCNGG 2 cut(s) 14, 169
BstV1I GCAGC 1 cut(s) 260
BsuI GTATCC 1 cut(s) 464
BsuRI GGCC 1 cut(s) 60
BtgI CCRYGG 1 cut(s) 61
BveI ACCTGC 1 cut(s) 547
Cac8I GCNNGC 1 cut(s) 49
CaiI CAGNNNCTG 1 cut(s) 185
CseI GACGC 1 cut(s) 111
CsiI ACCWGGT 1 cut(s) 14
CviAII CATG 1 cut(s) 62
CviJI RGCY 9 cut(s) 7, 51, 60, 251, 278, 287, 308, 334, 448
CviKI_1 RGCY 9 cut(s) 7, 51, 60, 251, 278, 287, 308, 334, 448
DdeI CTNAG 2 cut(s) 340, 444
DpnI GATC 1 cut(s) 228
DpnII GATC 1 cut(s) 226
EaeI YGGCCR 1 cut(s) 58
Eam1104I CTCTTC 1 cut(s) 249
EarI CTCTTC 1 cut(s) 249
Ecl136II GAGCTC 1 cut(s) 7
Eco130I CCWWGG 1 cut(s) 61
Eco24I GRGCYC 1 cut(s) 9
Eco31I GGTCTC 1 cut(s) 470
Eco32I GATATC 1 cut(s) 68
Eco53kI GAGCTC 1 cut(s) 7
Eco57I CTGAAG 2 cut(s) 207, 309
EcoICRI GAGCTC 1 cut(s) 7
EcoRII CCWGG 2 cut(s) 14, 169
EcoRV GATATC 1 cut(s) 68
EcoT14I CCWWGG 1 cut(s) 61
EcoT38I GRGCYC 1 cut(s) 9
ErhI CCWWGG 1 cut(s) 61
Esp3I CGTCTC 1 cut(s) 129
FaeI CATG 1 cut(s) 65
FaiI YATR 3 cut(s) 63, 352, 369
FatI CATG 1 cut(s) 61
FauI CCCGC 2 cut(s) 67, 149
FblI GTMKAC 1 cut(s) 20
Fnu4HI GCNGC 1 cut(s) 249
FriOI GRGCYC 1 cut(s) 9
Fsp4HI GCNGC 1 cut(s) 249
FspBI CTAG 2 cut(s) 71, 311
GluI GCNGC 1 cut(s) 249
GsuI CTGGAG 1 cut(s) 92
HaeIII GGCC 1 cut(s) 60
HgaI GACGC 1 cut(s) 111
Hin1II CATG 1 cut(s) 65
HinfI GANTC 3 cut(s) 93, 204, 338
Hpy166II GTNNAC 3 cut(s) 21, 419, 486
Hpy188I TCNGA 3 cut(s) 343, 470, 571
Hpy188III TCNNGA 2 cut(s) 230, 529
Hpy8I GTNNAC 3 cut(s) 21, 419, 486
HpyCH4III ACNGT 1 cut(s) 181
HpyCH4IV ACGT 3 cut(s) 117, 146, 401
HpyCH4V TGCA 3 cut(s) 12, 248, 407
HpyF10VI GCNNNNNNNGC 3 cut(s) 57, 284, 386
HpyF3I CTNAG 2 cut(s) 340, 444
HpySE526I ACGT 3 cut(s) 117, 146, 401
Hsp92II CATG 1 cut(s) 65
Kzo9I GATC 1 cut(s) 226
LmnI GCTCC 2 cut(s) 4, 283
Lsp1109I GCAGC 1 cut(s) 260
MabI ACCWGGT 1 cut(s) 14
MaeI CTAG 2 cut(s) 71, 311
MaeII ACGT 3 cut(s) 117, 146, 401
MaeIII GTNAC 1 cut(s) 181
MalI GATC 1 cut(s) 228
MboI GATC 1 cut(s) 226
MboII GAAGA 5 cut(s) 125, 200, 266, 302, 533
MhlI GDGCHC 1 cut(s) 9
MlyI GAGTC 2 cut(s) 213, 332
MnlI CCTC 6 cut(s) 114, 217, 289, 291, 444, 504
MseI TTAA 3 cut(s) 330, 398, 507
MspR9I CCNGG 2 cut(s) 16, 171
MvaI CCWGG 2 cut(s) 16, 171
MwoI GCNNNNNNNGC 3 cut(s) 57, 284, 386
NcoI CCATGG 1 cut(s) 61
NdeII GATC 1 cut(s) 226
NlaIII CATG 1 cut(s) 65
PfeI GAWTC 1 cut(s) 93
PfoI TCCNGGA 1 cut(s) 169
PkrI GCNGC 1 cut(s) 250
PleI GAGTC 2 cut(s) 212, 332
PpsI GAGTC 2 cut(s) 212, 332
Psp124BI GAGCTC 1 cut(s) 9
Psp1406I AACGTT 1 cut(s) 117
Psp6I CCWGG 2 cut(s) 14, 169
PspGI CCWGG 2 cut(s) 14, 169
PstNI CAGNNNCTG 1 cut(s) 185
SacI GAGCTC 1 cut(s) 9
SaqAI TTAA 3 cut(s) 330, 398, 507
SatI GCNGC 1 cut(s) 249
Sau3AI GATC 1 cut(s) 226
SchI GAGTC 2 cut(s) 213, 332
ScrFI CCNGG 2 cut(s) 16, 171
SduI GDGCHC 1 cut(s) 9
SexAI ACCWGGT 1 cut(s) 14
SmlI CTYRAG 3 cut(s) 282, 303, 527
SmoI CTYRAG 3 cut(s) 282, 303, 527
SsiI CCGC 2 cut(s) 74, 142
SspMI CTAG 2 cut(s) 71, 311
SstI GAGCTC 1 cut(s) 9
StyD4I CCNGG 2 cut(s) 14, 169
StyI CCWWGG 1 cut(s) 61
TaaI ACNGT 1 cut(s) 181
TaiI ACGT 3 cut(s) 120, 149, 404
TaqI TCGA 2 cut(s) 266, 423
TfiI GAWTC 1 cut(s) 93
Tru1I TTAA 3 cut(s) 330, 398, 507
Tru9I TTAA 3 cut(s) 330, 398, 507
TseI GCWGC 1 cut(s) 248
XmiI GTMKAC 1 cut(s) 20
XspI CTAG 2 cut(s) 71, 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.