CAAD domains of cyanobacterial aminoacyl-tRNA synthetase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G38100 AT4G38100 |
| fragaria_vesca | FvH4_1g19890 |
| malus_domestica | MD15G1315100.v1.1 |
| prunus_persica | Prupe.6G196600_v2.0.a1 |
| pyrus_communis | pycom15g27840 |
| rosa_chinensis | RchiOBHm_Chr2g0111711 |
| rosa_laevigata | RLG00000017919 |
| rosa_multiflora | Rmu_sc0000448.1_g000011 |
| rosa_roxburghii | Rroxscaffold_2G00132150 |
| rosa_rugosa | Rorug02G0175600 Rorug02G0175700 |
| rosa_samantha | Rh2AG228600 Rh2BG240900 Rh2CG232000 Rh2DG236600 |
| rosa_wichuraiana | Rw2G017660 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 595 |
| AccB1I | GGYRCC | 1 cut(s) | 425 |
| AcoI | YGGCCR | 1 cut(s) | 337 |
| AcsI | RAATTY | 1 cut(s) | 585 |
| AdeI | CACNNNGTG | 1 cut(s) | 197 |
| AfaI | GTAC | 1 cut(s) | 13 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 200, 215 |
| AflII | CTTAAG | 1 cut(s) | 596 |
| AgsI | TTSAA | 2 cut(s) | 364, 556 |
| AluBI | AGCT | 5 cut(s) | 7, 17, 58, 455, 467 |
| AluI | AGCT | 5 cut(s) | 7, 17, 58, 455, 467 |
| AoxI | GGCC | 1 cut(s) | 337 |
| ApeKI | GCWGC | 1 cut(s) | 601 |
| ApoI | RAATTY | 1 cut(s) | 585 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 252 |
| AsuHPI | GGTGA | 1 cut(s) | 230 |
| AsuNHI | GCTAGC | 1 cut(s) | 445 |
| BalI | TGGCCA | 1 cut(s) | 339 |
| BanI | GGYRCC | 1 cut(s) | 425 |
| BbsI | GAAGAC | 1 cut(s) | 318 |
| BbvI | GCAGC | 1 cut(s) | 613 |
| BccI | CCATC | 2 cut(s) | 38, 329 |
| BceAI | ACGGC | 1 cut(s) | 343 |
| BciVI | GTATCC | 1 cut(s) | 512 |
| BclI | TGATCA | 1 cut(s) | 63 |
| BfaI | CTAG | 1 cut(s) | 446 |
| BfrI | CTTAAG | 1 cut(s) | 596 |
| BfuAI | ACCTGC | 1 cut(s) | 595 |
| BfuI | GTATCC | 1 cut(s) | 512 |
| BisI | GCNGC | 1 cut(s) | 602 |
| BlsI | GCNGC | 1 cut(s) | 603 |
| BmiI | GGNNCC | 1 cut(s) | 427 |
| BmsI | GCATC | 1 cut(s) | 458 |
| BmtI | GCTAGC | 1 cut(s) | 449 |
| BpiI | GAAGAC | 1 cut(s) | 318 |
| BsaAI | YACGTR | 1 cut(s) | 399 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 87, 117, 560, 590 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 200, 215 |
| Bse118I | RCCGGY | 1 cut(s) | 215 |
| BseGI | GGATG | 2 cut(s) | 89, 340 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 200, 215 |
| BseMII | CTCAG | 2 cut(s) | 124, 345 |
| BseRI | GAGGAG | 1 cut(s) | 584 |
| BseXI | GCAGC | 1 cut(s) | 613 |
| BshFI | GGCC | 1 cut(s) | 339 |
| BshNI | GGYRCC | 1 cut(s) | 425 |
| BsiSI | CCGG | 1 cut(s) | 216 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 200, 215 |
| BsnI | GGCC | 1 cut(s) | 339 |
| Bsp1407I | TGTACA | 1 cut(s) | 11 |
| Bsp143I | GATC | 1 cut(s) | 63 |
| BspANI | GGCC | 1 cut(s) | 339 |
| BspCNI | CTCAG | 2 cut(s) | 123, 346 |
| BspLI | GGNNCC | 1 cut(s) | 427 |
| BspMI | ACCTGC | 1 cut(s) | 595 |
| BspOI | GCTAGC | 1 cut(s) | 449 |
| BspQI | GCTCTTC | 2 cut(s) | 163, 216 |
| BspT107I | GGYRCC | 1 cut(s) | 425 |
| BspTI | CTTAAG | 1 cut(s) | 596 |
| BsrFI | RCCGGY | 1 cut(s) | 215 |
| BsrGI | TGTACA | 1 cut(s) | 11 |
| BssAI | RCCGGY | 1 cut(s) | 215 |
| BssMI | GATC | 1 cut(s) | 63 |
| Bst4CI | ACNGT | 2 cut(s) | 322, 389 |
| Bst6I | CTCTTC | 2 cut(s) | 163, 216 |
| BstAFI | CTTAAG | 1 cut(s) | 596 |
| BstAUI | TGTACA | 1 cut(s) | 11 |
| BstBAI | YACGTR | 1 cut(s) | 399 |
| BstC8I | GCNNGC | 1 cut(s) | 447 |
| BstDEI | CTNAG | 2 cut(s) | 110, 354 |
| BstF5I | GGATG | 2 cut(s) | 89, 340 |
| BstKTI | GATC | 1 cut(s) | 66 |
| BstMBI | GATC | 1 cut(s) | 63 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 336, 434 |
| BstSNI | TACGTA | 1 cut(s) | 399 |
| BstV1I | GCAGC | 1 cut(s) | 613 |
| BstV2I | GAAGAC | 1 cut(s) | 318 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 499 |
| BsuI | GTATCC | 1 cut(s) | 512 |
| BsuRI | GGCC | 1 cut(s) | 339 |
| BtsCI | GGATG | 2 cut(s) | 89, 340 |
| BtsIMutI | CAGTG | 1 cut(s) | 394 |
| BveI | ACCTGC | 1 cut(s) | 595 |
| Cac8I | GCNNGC | 1 cut(s) | 447 |
| Cfr10I | RCCGGY | 1 cut(s) | 215 |
| Csp6I | GTAC | 1 cut(s) | 12 |
| CviJI | RGCY | 9 cut(s) | 7, 17, 29, 58, 145, 339, 445, 455, 467 |
| CviKI_1 | RGCY | 9 cut(s) | 7, 17, 29, 58, 145, 339, 445, 455, 467 |
| CviQI | GTAC | 1 cut(s) | 12 |
| DdeI | CTNAG | 2 cut(s) | 110, 354 |
| DpnI | GATC | 1 cut(s) | 65 |
| DpnII | GATC | 1 cut(s) | 63 |
| DraIII | CACNNNGTG | 1 cut(s) | 197 |
| EaeI | YGGCCR | 1 cut(s) | 337 |
| Eam1104I | CTCTTC | 2 cut(s) | 163, 216 |
| EarI | CTCTTC | 2 cut(s) | 163, 216 |
| Eco105I | TACGTA | 1 cut(s) | 399 |
| Eco32I | GATATC | 1 cut(s) | 351 |
| EcoRV | GATATC | 1 cut(s) | 351 |
| FaiI | YATR | 3 cut(s) | 213, 377, 417 |
| FbaI | TGATCA | 1 cut(s) | 63 |
| Fnu4HI | GCNGC | 1 cut(s) | 602 |
| FokI | GGATG | 2 cut(s) | 76, 347 |
| Fsp4HI | GCNGC | 1 cut(s) | 602 |
| FspBI | CTAG | 1 cut(s) | 446 |
| GluI | GCNGC | 1 cut(s) | 602 |
| HaeIII | GGCC | 1 cut(s) | 339 |
| HapII | CCGG | 1 cut(s) | 216 |
| HindIII | AAGCTT | 1 cut(s) | 56 |
| HinfI | GANTC | 2 cut(s) | 314, 473 |
| HpaII | CCGG | 1 cut(s) | 216 |
| HphI | GGTGA | 1 cut(s) | 230 |
| Hpy166II | GTNNAC | 1 cut(s) | 325 |
| Hpy188I | TCNGA | 6 cut(s) | 63, 113, 184, 355, 549, 619 |
| Hpy188III | TCNNGA | 1 cut(s) | 153 |
| Hpy8I | GTNNAC | 1 cut(s) | 325 |
| HpyAV | CCTTC | 1 cut(s) | 50 |
| HpyCH4III | ACNGT | 2 cut(s) | 322, 389 |
| HpyCH4IV | ACGT | 1 cut(s) | 398 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 336, 434 |
| HpyF3I | CTNAG | 2 cut(s) | 110, 354 |
| HpySE526I | ACGT | 1 cut(s) | 398 |
| Ksp22I | TGATCA | 1 cut(s) | 63 |
| Kzo9I | GATC | 1 cut(s) | 63 |
| LguI | GCTCTTC | 2 cut(s) | 163, 216 |
| LmnI | GCTCC | 2 cut(s) | 4, 464 |
| LpnPI | CCDG | 9 cut(s) | 127, 229, 276, 452, 485, 514, 550, 575, 590 |
| Lsp1109I | GCAGC | 1 cut(s) | 613 |
| LweI | GCATC | 1 cut(s) | 458 |
| MaeI | CTAG | 1 cut(s) | 446 |
| MaeII | ACGT | 1 cut(s) | 398 |
| MalI | GATC | 1 cut(s) | 65 |
| MboI | GATC | 1 cut(s) | 63 |
| MboII | GAAGA | 5 cut(s) | 180, 233, 260, 308, 323 |
| MlsI | TGGCCA | 1 cut(s) | 339 |
| MluCI | AATT | 3 cut(s) | 271, 411, 585 |
| MluNI | TGGCCA | 1 cut(s) | 339 |
| MlyI | GAGTC | 1 cut(s) | 308 |
| MmeI | TCCRAC | 3 cut(s) | 60, 363, 442 |
| MnlI | CCTC | 5 cut(s) | 109, 117, 130, 178, 562 |
| Mox20I | TGGCCA | 1 cut(s) | 339 |
| MroXI | GAANNNNTTC | 1 cut(s) | 252 |
| MscI | TGGCCA | 1 cut(s) | 339 |
| MseI | TTAA | 1 cut(s) | 597 |
| Msp20I | TGGCCA | 1 cut(s) | 339 |
| MspA1I | CMGCKG | 1 cut(s) | 455 |
| MspCI | CTTAAG | 1 cut(s) | 596 |
| MspI | CCGG | 1 cut(s) | 216 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 336, 434 |
| NdeII | GATC | 1 cut(s) | 63 |
| NheI | GCTAGC | 1 cut(s) | 445 |
| NlaIV | GGNNCC | 1 cut(s) | 427 |
| PciSI | GCTCTTC | 2 cut(s) | 163, 216 |
| PdmI | GAANNNNTTC | 1 cut(s) | 252 |
| PfeI | GAWTC | 1 cut(s) | 473 |
| PkrI | GCNGC | 1 cut(s) | 603 |
| PleI | GAGTC | 1 cut(s) | 308 |
| PpsI | GAGTC | 1 cut(s) | 308 |
| Ppu21I | YACGTR | 1 cut(s) | 399 |
| PspN4I | GGNNCC | 1 cut(s) | 427 |
| PvuII | CAGCTG | 1 cut(s) | 455 |
| RsaI | GTAC | 1 cut(s) | 13 |
| RsaNI | GTAC | 1 cut(s) | 12 |
| SapI | GCTCTTC | 2 cut(s) | 163, 216 |
| SaqAI | TTAA | 1 cut(s) | 597 |
| SatI | GCNGC | 1 cut(s) | 602 |
| Sau3AI | GATC | 1 cut(s) | 63 |
| SchI | GAGTC | 1 cut(s) | 308 |
| SfaNI | GCATC | 1 cut(s) | 458 |
| SmlI | CTYRAG | 1 cut(s) | 596 |
| SmoI | CTYRAG | 1 cut(s) | 596 |
| SnaBI | TACGTA | 1 cut(s) | 399 |
| Sse9I | AATT | 3 cut(s) | 271, 411, 585 |
| SspMI | CTAG | 1 cut(s) | 446 |
| TaaI | ACNGT | 2 cut(s) | 322, 389 |
| TaiI | ACGT | 1 cut(s) | 401 |
| TaqI | TCGA | 2 cut(s) | 154, 283 |
| TasI | AATT | 3 cut(s) | 271, 411, 585 |
| TatI | WGTACW | 1 cut(s) | 11 |
| TfiI | GAWTC | 1 cut(s) | 473 |
| Tru1I | TTAA | 1 cut(s) | 597 |
| Tru9I | TTAA | 1 cut(s) | 597 |
| TscAI | CASTG | 1 cut(s) | 394 |
| TseI | GCWGC | 1 cut(s) | 601 |
| TspGWI | ACGGA | 1 cut(s) | 394 |
| TspRI | CASTG | 1 cut(s) | 394 |
| Vha464I | CTTAAG | 1 cut(s) | 596 |
| XapI | RAATTY | 1 cut(s) | 585 |
| XmnI | GAANNNNTTC | 1 cut(s) | 252 |
| XspI | CTAG | 1 cut(s) | 446 |