CAAD domains of cyanobacterial aminoacyl-tRNA synthetase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G38100 AT4G38100 |
| fragaria_vesca | FvH4_1g19890 |
| malus_domestica | MD15G1315100.v1.1 |
| prunus_persica | Prupe.6G196600_v2.0.a1 |
| pyrus_communis | pycom15g27840 |
| rosa_chinensis | RchiOBHm_Chr2g0111711 |
| rosa_laevigata | RLG00000017919 |
| rosa_multiflora | Rmu_sc0000448.1_g000011 |
| rosa_roxburghii | Rroxscaffold_2G00132150 |
| rosa_rugosa | Rorug02G0175600 Rorug02G0175700 |
| rosa_samantha | Rh2AG228600 Rh2BG240900 Rh2CG232000 Rh2DG236600 |
| rosa_wichuraiana | Rw2G017660 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 395 |
| AccBSI | CCGCTC | 1 cut(s) | 126 |
| AccI | GTMKAC | 1 cut(s) | 526 |
| AciI | CCGC | 3 cut(s) | 73, 124, 230 |
| AcoI | YGGCCR | 1 cut(s) | 307 |
| AcuI | CTGAAG | 1 cut(s) | 180 |
| AfaI | GTAC | 2 cut(s) | 13, 509 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 521 |
| AluBI | AGCT | 5 cut(s) | 7, 149, 257, 275, 425 |
| AluI | AGCT | 5 cut(s) | 7, 149, 257, 275, 425 |
| Alw21I | GWGCWC | 1 cut(s) | 9 |
| AoxI | GGCC | 1 cut(s) | 307 |
| ApeKI | GCWGC | 1 cut(s) | 272 |
| AsuHPI | GGTGA | 1 cut(s) | 200 |
| BalI | TGGCCA | 1 cut(s) | 309 |
| BanI | GGYRCC | 1 cut(s) | 395 |
| BanII | GRGCYC | 1 cut(s) | 9 |
| Bbv12I | GWGCWC | 1 cut(s) | 9 |
| BbvI | GCAGC | 1 cut(s) | 284 |
| BccI | CCATC | 2 cut(s) | 194, 299 |
| BciVI | GTATCC | 1 cut(s) | 220 |
| BfaI | CTAG | 1 cut(s) | 468 |
| BfuI | GTATCC | 1 cut(s) | 220 |
| BisI | GCNGC | 1 cut(s) | 273 |
| BlsI | GCNGC | 1 cut(s) | 274 |
| BmcAI | AGTACT | 1 cut(s) | 509 |
| BmiI | GGNNCC | 1 cut(s) | 397 |
| BmsI | GCATC | 2 cut(s) | 355, 428 |
| BpuEI | CTTGAG | 1 cut(s) | 261 |
| BsaJI | CCNNGG | 1 cut(s) | 399 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 72, 102 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 521 |
| BseDI | CCNNGG | 1 cut(s) | 399 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 521 |
| BseMII | CTCAG | 2 cut(s) | 130, 315 |
| BseXI | GCAGC | 1 cut(s) | 284 |
| BshFI | GGCC | 1 cut(s) | 309 |
| BshNI | GGYRCC | 1 cut(s) | 395 |
| BsiHKAI | GWGCWC | 1 cut(s) | 9 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 521 |
| BsnI | GGCC | 1 cut(s) | 309 |
| Bsp1286I | GDGCHC | 1 cut(s) | 9 |
| BspACI | CCGC | 3 cut(s) | 73, 124, 230 |
| BspANI | GGCC | 1 cut(s) | 309 |
| BspCNI | CTCAG | 2 cut(s) | 129, 316 |
| BspLI | GGNNCC | 1 cut(s) | 397 |
| BspQI | GCTCTTC | 1 cut(s) | 186 |
| BspT107I | GGYRCC | 1 cut(s) | 395 |
| BsrBI | CCGCTC | 1 cut(s) | 126 |
| BssECI | CCNNGG | 1 cut(s) | 399 |
| BssNAI | GTATAC | 1 cut(s) | 527 |
| BssT1I | CCWWGG | 1 cut(s) | 399 |
| Bst1107I | GTATAC | 1 cut(s) | 527 |
| Bst4CI | ACNGT | 1 cut(s) | 389 |
| Bst6I | CTCTTC | 1 cut(s) | 186 |
| BstDEI | CTNAG | 2 cut(s) | 116, 324 |
| BstEII | GGTNACC | 1 cut(s) | 403 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 306 |
| BstPI | GGTNACC | 1 cut(s) | 403 |
| BstV1I | GCAGC | 1 cut(s) | 284 |
| BstZ17I | GTATAC | 1 cut(s) | 527 |
| BsuI | GTATCC | 1 cut(s) | 220 |
| BsuRI | GGCC | 1 cut(s) | 309 |
| BtsI | GCAGTG | 1 cut(s) | 307 |
| BtsIMutI | CAGTG | 1 cut(s) | 307 |
| CseI | GACGC | 1 cut(s) | 544 |
| Csp6I | GTAC | 2 cut(s) | 12, 508 |
| CviJI | RGCY | 7 cut(s) | 7, 120, 149, 257, 275, 309, 425 |
| CviKI_1 | RGCY | 7 cut(s) | 7, 120, 149, 257, 275, 309, 425 |
| CviQI | GTAC | 2 cut(s) | 12, 508 |
| DdeI | CTNAG | 2 cut(s) | 116, 324 |
| EaeI | YGGCCR | 1 cut(s) | 307 |
| Eam1104I | CTCTTC | 1 cut(s) | 186 |
| EarI | CTCTTC | 1 cut(s) | 186 |
| EciI | GGCGGA | 1 cut(s) | 62 |
| Ecl136II | GAGCTC | 1 cut(s) | 7 |
| Eco130I | CCWWGG | 1 cut(s) | 399 |
| Eco24I | GRGCYC | 1 cut(s) | 9 |
| Eco32I | GATATC | 1 cut(s) | 321 |
| Eco53kI | GAGCTC | 1 cut(s) | 7 |
| Eco57I | CTGAAG | 1 cut(s) | 180 |
| Eco91I | GGTNACC | 1 cut(s) | 403 |
| EcoICRI | GAGCTC | 1 cut(s) | 7 |
| EcoO65I | GGTNACC | 1 cut(s) | 403 |
| EcoRV | GATATC | 1 cut(s) | 321 |
| EcoT14I | CCWWGG | 1 cut(s) | 399 |
| EcoT22I | ATGCAT | 1 cut(s) | 370 |
| EcoT38I | GRGCYC | 1 cut(s) | 9 |
| ErhI | CCWWGG | 1 cut(s) | 399 |
| FauNDI | CATATG | 1 cut(s) | 370 |
| FblI | GTMKAC | 1 cut(s) | 526 |
| Fnu4HI | GCNGC | 1 cut(s) | 273 |
| FriOI | GRGCYC | 1 cut(s) | 9 |
| Fsp4HI | GCNGC | 1 cut(s) | 273 |
| FspBI | CTAG | 1 cut(s) | 468 |
| GluI | GCNGC | 1 cut(s) | 273 |
| HaeIII | GGCC | 1 cut(s) | 309 |
| HgaI | GACGC | 1 cut(s) | 544 |
| HinfI | GANTC | 2 cut(s) | 443, 484 |
| HphI | GGTGA | 1 cut(s) | 200 |
| Hpy166II | GTNNAC | 1 cut(s) | 527 |
| Hpy188I | TCNGA | 2 cut(s) | 160, 325 |
| Hpy188III | TCNNGA | 1 cut(s) | 278 |
| Hpy8I | GTNNAC | 1 cut(s) | 527 |
| HpyCH4III | ACNGT | 1 cut(s) | 389 |
| HpyCH4V | TGCA | 1 cut(s) | 368 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 306 |
| HpyF3I | CTNAG | 2 cut(s) | 116, 324 |
| LguI | GCTCTTC | 1 cut(s) | 186 |
| LmnI | GCTCC | 1 cut(s) | 4 |
| LpnPI | CCDG | 4 cut(s) | 171, 246, 422, 507 |
| Lsp1109I | GCAGC | 1 cut(s) | 284 |
| LweI | GCATC | 2 cut(s) | 355, 428 |
| MaeI | CTAG | 1 cut(s) | 468 |
| MaeIII | GTNAC | 2 cut(s) | 403, 461 |
| MbiI | CCGCTC | 1 cut(s) | 126 |
| MboII | GAAGA | 5 cut(s) | 32, 147, 173, 203, 278 |
| MfeI | CAATTG | 1 cut(s) | 499 |
| MhlI | GDGCHC | 1 cut(s) | 9 |
| MlsI | TGGCCA | 1 cut(s) | 309 |
| MluCI | AATT | 2 cut(s) | 92, 499 |
| MluNI | TGGCCA | 1 cut(s) | 309 |
| MlyI | GAGTC | 1 cut(s) | 493 |
| MmeI | TCCRAC | 1 cut(s) | 333 |
| MnlI | CCTC | 5 cut(s) | 39, 80, 94, 131, 274 |
| Mox20I | TGGCCA | 1 cut(s) | 309 |
| Mph1103I | ATGCAT | 1 cut(s) | 370 |
| MscI | TGGCCA | 1 cut(s) | 309 |
| MseI | TTAA | 1 cut(s) | 342 |
| Msp20I | TGGCCA | 1 cut(s) | 309 |
| MunI | CAATTG | 1 cut(s) | 499 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 306 |
| NdeI | CATATG | 1 cut(s) | 370 |
| NlaIV | GGNNCC | 1 cut(s) | 397 |
| NsiI | ATGCAT | 1 cut(s) | 370 |
| PciSI | GCTCTTC | 1 cut(s) | 186 |
| PfeI | GAWTC | 1 cut(s) | 443 |
| PkrI | GCNGC | 1 cut(s) | 274 |
| PleI | GAGTC | 1 cut(s) | 492 |
| PpsI | GAGTC | 1 cut(s) | 492 |
| Psp124BI | GAGCTC | 1 cut(s) | 9 |
| PspEI | GGTNACC | 1 cut(s) | 403 |
| PspN4I | GGNNCC | 1 cut(s) | 397 |
| RsaI | GTAC | 2 cut(s) | 13, 509 |
| RsaNI | GTAC | 2 cut(s) | 12, 508 |
| SacI | GAGCTC | 1 cut(s) | 9 |
| SapI | GCTCTTC | 1 cut(s) | 186 |
| SaqAI | TTAA | 1 cut(s) | 342 |
| SatI | GCNGC | 1 cut(s) | 273 |
| ScaI | AGTACT | 1 cut(s) | 509 |
| SchI | GAGTC | 1 cut(s) | 493 |
| SduI | GDGCHC | 1 cut(s) | 9 |
| SetI | ASST | 8 cut(s) | 9, 31, 72, 151, 259, 277, 427, 436 |
| SfaNI | GCATC | 2 cut(s) | 355, 428 |
| SmlI | CTYRAG | 1 cut(s) | 276 |
| SmoI | CTYRAG | 1 cut(s) | 276 |
| Sse9I | AATT | 2 cut(s) | 92, 499 |
| SsiI | CCGC | 3 cut(s) | 73, 124, 230 |
| SspMI | CTAG | 1 cut(s) | 468 |
| SstI | GAGCTC | 1 cut(s) | 9 |
| StyI | CCWWGG | 1 cut(s) | 399 |
| TaaI | ACNGT | 1 cut(s) | 389 |
| TaqI | TCGA | 1 cut(s) | 140 |
| TasI | AATT | 2 cut(s) | 92, 499 |
| TatI | WGTACW | 1 cut(s) | 507 |
| TfiI | GAWTC | 1 cut(s) | 443 |
| Tru1I | TTAA | 1 cut(s) | 342 |
| Tru9I | TTAA | 1 cut(s) | 342 |
| TscAI | CASTG | 1 cut(s) | 307 |
| TseI | GCWGC | 1 cut(s) | 272 |
| TspRI | CASTG | 1 cut(s) | 307 |
| XmiI | GTMKAC | 1 cut(s) | 526 |
| XspI | CTAG | 1 cut(s) | 468 |
| ZrmI | AGTACT | 1 cut(s) | 509 |
| Zsp2I | ATGCAT | 1 cut(s) | 370 |