Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0014374

Physical Location & Seq

Genomic Coordinates Reverse (-)

23368950 .. 23371469

Gene Structure 2520 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g27840.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGCAGCTCTGTACAGCCGCTCCCCAAGCTATCTCCAACCTCCCTAACCACGGCCACCGCCGCGACAACCGCCATCTCATCACAGACTCCACCACCAACCTCAGCTCGAAACCCTCACTCGTTCACAGACAAATCCCATTCTCACTCAACTCTTTCCGGCTTCACTCTCGATTGCTTTTGGCGAGAGCAGCAAAATCAGAAGAAACTCCAAGTGGGCCCAATCCTTATGCTGCCGAAGAGCGCAGCGGCGGCGTAATCTTGGAGGATGTTGTGCCCCCTGAAAAGAATCTGTACAATCAAACTTGGACTGAAGAAGAAGTTAAAGAAGATGCAAATGCGGACGCGGATGGCCAAATACAGATATTCGATTATTTCAGTAACCTCGACTTAAAGTTGGATAGTGAGGATACATACAGCCTTTTGCTATACGGTGGTGGTGCCTTGTTTGCCCTGTGGTTAGCATCAGCTGTTGTTGGAGCTATTGATTCTATTCCGTTGTTCCCGAAGTTGCTGGAAGTCGTCGGTCTTGGATACACCGTCTGGTTTAGCTCTCGTTATCTGATATTCAAGAAAAACAGAGATGAGTTGGTTACTAAAGTTCAAGTCCTTAAACAGCAGGTTCTGGGTTCGGACGATGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CAAD

Protein Analysis

214

Amino Acids

23.72

Weight (kDa)

5.13

Isoelectric Point (pI)

40.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014374)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38100 AT4G38100
fragaria_vesca	FvH4_1g19890
malus_domestica	MD15G1315100.v1.1
prunus_persica	Prupe.6G196600_v2.0.a1
pyrus_communis	pycom15g27840
rosa_chinensis	RchiOBHm_Chr2g0111711
rosa_laevigata	RLG00000017919
rosa_multiflora	Rmu_sc0000448.1_g000011
rosa_roxburghii	Rroxscaffold_2G00132150
rosa_rugosa	Rorug02G0175600 Rorug02G0175700
rosa_samantha	Rh2AG228600 Rh2BG240900 Rh2CG232000 Rh2DG236600
rosa_wichuraiana	Rw2G017660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	607
AccB1I	GGYRCC	1 cut(s)	437
AccBSI	CCGCTC	1 cut(s)	20
AccII	CGCG	2 cut(s)	63, 344
AciI	CCGC	8 cut(s)	18, 58, 61, 70, 246, 249, 338, 344
AcoI	YGGCCR	2 cut(s)	52, 349
AcuI	CTGAAG	1 cut(s)	330
AfaI	GTAC	2 cut(s)	13, 293
AfiI	CCNNNNNNNGG	1 cut(s)	50
AgsI	TTSAA	2 cut(s)	568, 602
AluBI	AGCT	6 cut(s)	7, 29, 105, 467, 479, 549
AluI	AGCT	6 cut(s)	7, 29, 105, 467, 479, 549
AlwNI	CAGNNNCTG	1 cut(s)	622
AoxI	GGCC	3 cut(s)	52, 215, 349
ApaI	GGGCCC	1 cut(s)	219
ApeKI	GCWGC	4 cut(s)	4, 188, 230, 243
AspLEI	GCGC	1 cut(s)	243
AspS9I	GGNCC	2 cut(s)	215, 216
BaeGI	GKGCMC	2 cut(s)	219, 276
BalI	TGGCCA	1 cut(s)	351
BanI	GGYRCC	1 cut(s)	437
BanII	GRGCYC	1 cut(s)	219
BbvCI	CCTCAGC	1 cut(s)	101
BbvI	GCAGC	4 cut(s)	16, 200, 217, 255
BccI	CCATC	2 cut(s)	81, 341
BceAI	ACGGC	1 cut(s)	67
BciVI	GTATCC	2 cut(s)	400, 524
BfuAI	ACCTGC	1 cut(s)	607
BfuI	GTATCC	2 cut(s)	400, 524
BisI	GCNGC	8 cut(s)	5, 18, 61, 189, 231, 244, 247, 250
BlsI	GCNGC	8 cut(s)	6, 19, 62, 190, 232, 245, 248, 251
BmgT120I	GGNCC	2 cut(s)	215, 216
BmiI	GGNNCC	2 cut(s)	217, 439
BmsI	GCATC	2 cut(s)	319, 470
Bpu10I	CCTNAGC	1 cut(s)	101
BsaJI	CCNNGG	1 cut(s)	49
BsaXI	ACNNNNNCTCC	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	1 cut(s)	50
BseDI	CCNNGG	1 cut(s)	49
BseGI	GGATG	2 cut(s)	271, 352
BseLI	CCNNNNNNNGG	1 cut(s)	50
BseMII	CTCAG	1 cut(s)	115
BseSI	GKGCMC	2 cut(s)	219, 276
BseXI	GCAGC	4 cut(s)	16, 200, 217, 255
Bsh1236I	CGCG	2 cut(s)	63, 344
BshFI	GGCC	3 cut(s)	54, 217, 351
BshNI	GGYRCC	1 cut(s)	437
BsiSI	CCGG	1 cut(s)	157
BslI	CCNNNNNNNGG	1 cut(s)	50
BsnI	GGCC	3 cut(s)	54, 217, 351
Bsp120I	GGGCCC	1 cut(s)	215
Bsp1286I	GDGCHC	2 cut(s)	219, 276
Bsp1407I	TGTACA	2 cut(s)	11, 291
BspACI	CCGC	8 cut(s)	18, 58, 61, 70, 246, 249, 338, 344
BspANI	GGCC	3 cut(s)	54, 217, 351
BspCNI	CTCAG	1 cut(s)	114
BspFNI	CGCG	2 cut(s)	63, 344
BspLI	GGNNCC	2 cut(s)	217, 439
BspMI	ACCTGC	1 cut(s)	607
BspQI	GCTCTTC	1 cut(s)	231
BspT107I	GGYRCC	1 cut(s)	437
BsrBI	CCGCTC	1 cut(s)	20
BsrGI	TGTACA	2 cut(s)	11, 291
BssECI	CCNNGG	1 cut(s)	49
Bst4CI	ACNGT	2 cut(s)	431, 538
Bst6I	CTCTTC	1 cut(s)	231
BstAUI	TGTACA	2 cut(s)	11, 291
BstDEI	CTNAG	1 cut(s)	101
BstDSI	CCRYGG	1 cut(s)	49
BstF5I	GGATG	2 cut(s)	271, 352
BstFNI	CGCG	2 cut(s)	63, 344
BstHHI	GCGC	1 cut(s)	243
BstMWI	GCNNNNNNNGC	6 cut(s)	26, 60, 69, 188, 249, 446
BstSLI	GKGCMC	2 cut(s)	219, 276
BstUI	CGCG	2 cut(s)	63, 344
BstV1I	GCAGC	4 cut(s)	16, 200, 217, 255
BsuI	GTATCC	2 cut(s)	400, 524
BsuRI	GGCC	3 cut(s)	54, 217, 351
BtgI	CCRYGG	1 cut(s)	49
BtsCI	GGATG	2 cut(s)	271, 352
BveI	ACCTGC	1 cut(s)	607
CaiI	CAGNNNCTG	1 cut(s)	622
CfoI	GCGC	1 cut(s)	243
Cfr13I	GGNCC	2 cut(s)	215, 216
CseI	GACGC	1 cut(s)	350
Csp6I	GTAC	2 cut(s)	12, 292
CviQI	GTAC	2 cut(s)	12, 292
DdeI	CTNAG	1 cut(s)	101
EaeI	YGGCCR	2 cut(s)	52, 349
Eam1104I	CTCTTC	1 cut(s)	231
EarI	CTCTTC	1 cut(s)	231
Eco24I	GRGCYC	1 cut(s)	219
Eco57I	CTGAAG	1 cut(s)	330
EcoT38I	GRGCYC	1 cut(s)	219
FaiI	YATR	3 cut(s)	228, 412, 427
Fnu4HI	GCNGC	8 cut(s)	5, 18, 61, 189, 231, 244, 247, 250
FokI	GGATG	2 cut(s)	278, 359
FriOI	GRGCYC	1 cut(s)	219
Fsp4HI	GCNGC	8 cut(s)	5, 18, 61, 189, 231, 244, 247, 250
GlaI	GCGC	1 cut(s)	242
GluI	GCNGC	8 cut(s)	5, 18, 61, 189, 231, 244, 247, 250
HaeIII	GGCC	3 cut(s)	54, 217, 351
HapII	CCGG	1 cut(s)	157
HgaI	GACGC	1 cut(s)	350
HhaI	GCGC	1 cut(s)	243
Hin6I	GCGC	1 cut(s)	241
HinP1I	GCGC	1 cut(s)	241
HinfI	GANTC	3 cut(s)	86, 286, 485
HpaII	CCGG	1 cut(s)	157
Hpy166II	GTNNAC	1 cut(s)	124
Hpy188I	TCNGA	3 cut(s)	199, 561, 631
Hpy188III	TCNNGA	3 cut(s)	168, 502, 568
Hpy8I	GTNNAC	1 cut(s)	124
Hpy99I	CGWCG	1 cut(s)	524
HpyCH4III	ACNGT	2 cut(s)	431, 538
HpyCH4V	TGCA	2 cut(s)	4, 332
HpyF10VI	GCNNNNNNNGC	6 cut(s)	26, 60, 69, 188, 249, 446
HpyF3I	CTNAG	1 cut(s)	101
HspAI	GCGC	1 cut(s)	241
LguI	GCTCTTC	1 cut(s)	231
LmnI	GCTCC	2 cut(s)	25, 476
LpnPI	CCDG	7 cut(s)	170, 291, 464, 497, 526, 602, 608
Lsp1109I	GCAGC	4 cut(s)	16, 200, 217, 255
LweI	GCATC	2 cut(s)	319, 470
MaeIII	GTNAC	2 cut(s)	377, 589
MbiI	CCGCTC	1 cut(s)	20
MboII	GAAGA	5 cut(s)	212, 248, 323, 326, 338
MhlI	GDGCHC	2 cut(s)	219, 276
MlsI	TGGCCA	1 cut(s)	351
MluNI	TGGCCA	1 cut(s)	351
MlyI	GAGTC	1 cut(s)	80
MmeI	TCCRAC	3 cut(s)	60, 375, 454
MnlI	CCTC	6 cut(s)	50, 110, 124, 256, 392, 397
Mox20I	TGGCCA	1 cut(s)	351
MscI	TGGCCA	1 cut(s)	351
MseI	TTAA	3 cut(s)	321, 389, 609
Msp20I	TGGCCA	1 cut(s)	351
MspA1I	CMGCKG	2 cut(s)	246, 467
MspI	CCGG	1 cut(s)	157
MvnI	CGCG	2 cut(s)	63, 344
MwoI	GCNNNNNNNGC	6 cut(s)	26, 60, 69, 188, 249, 446
NlaIV	GGNNCC	2 cut(s)	217, 439
PciSI	GCTCTTC	1 cut(s)	231
PfeI	GAWTC	2 cut(s)	286, 485
PkrI	GCNGC	8 cut(s)	6, 19, 62, 190, 232, 245, 248, 251
PleI	GAGTC	1 cut(s)	80
PpsI	GAGTC	1 cut(s)	80
PspN4I	GGNNCC	2 cut(s)	217, 439
PspOMI	GGGCCC	1 cut(s)	215
PspPI	GGNCC	2 cut(s)	215, 216
PstNI	CAGNNNCTG	1 cut(s)	622
PvuII	CAGCTG	1 cut(s)	467
RsaI	GTAC	2 cut(s)	13, 293
RsaNI	GTAC	2 cut(s)	12, 292
SapI	GCTCTTC	1 cut(s)	231
SaqAI	TTAA	3 cut(s)	321, 389, 609
SatI	GCNGC	8 cut(s)	5, 18, 61, 189, 231, 244, 247, 250
Sau96I	GGNCC	2 cut(s)	215, 216
SchI	GAGTC	1 cut(s)	80
SduI	GDGCHC	2 cut(s)	219, 276
SfaNI	GCATC	2 cut(s)	319, 470
SsiI	CCGC	8 cut(s)	18, 58, 61, 70, 246, 249, 338, 344
TaaI	ACNGT	2 cut(s)	431, 538
TaqI	TCGA	4 cut(s)	107, 169, 366, 384
TaqII	GACCGA	1 cut(s)	512
TatI	WGTACW	2 cut(s)	11, 291
TauI	GCSGC	4 cut(s)	20, 63, 249, 252
TfiI	GAWTC	2 cut(s)	286, 485
Tru1I	TTAA	3 cut(s)	321, 389, 609
Tru9I	TTAA	3 cut(s)	321, 389, 609
TseI	GCWGC	4 cut(s)	4, 188, 230, 243
TspGWI	ACGGA	1 cut(s)	483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.