Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0014374

Physical Location & Seq

Genomic Coordinates Reverse (-)

32107270 .. 32110709

Gene Structure 3440 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1315100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGCAGCTCTGTACAGCCGCTCCCCAAGCTGTCTCCAACCTCCCTAACCGCGGCCACCGCCGCCACAACCGCCATCTCATCACAGACTCCACCACCAACCTCAGCTCGAAACCCTCACTCCTTCACAGACAAATCCCATGCTCACTCAAATCTCTCCGGCTTCACTCTCGATTGCTTTTGGCGAGAGCAGCAACATCAGAAGAAACTCCAAGTGGGCCCAATCCTTATGCTGCCGAAGAGCGCGGCGGTGGCGGCGTATCCTTGGAGGATGTTGTGCCCCCTGAAAAGAATCTGTACAATCAAACTTGGACTGAAGAAGAAGTTAAAGAAGATGCAAATGCGGACGCGGGTGGCCAAATGCAGATATTCGATTATTTCAGTAACCTCGACTTAAAGTTGGATAGTGATGATACGTACAACCTTTTGCTATATGGTGGTGGTGCCTTGTTTGCCTTGTGGTTAGCATCAGCTGTCGTTGGAGCTATTGATTCTATTCCGTTGTTCCCGAAGTTGCTGGAAGTAGTCGGTCTTGGATACACCGTCTGGTTTAGCTCTCGTTATCTGATATTCAAGAAAAACAGAGATGAGTTGGTTGCTAAAGTTCAAGTCCTTAAACAGCAGGTTCTGGGTTCGGACGATGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CAAD

Protein Analysis

215

Amino Acids

23.61

Weight (kDa)

5.55

Isoelectric Point (pI)

38.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CAAD	PF14159	135 - 210	6.5e-26	CAAD domains of cyanobacterial aminoacyl-tRNA synthetase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0014374)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38100 AT4G38100
fragaria_vesca	FvH4_1g19890
malus_domestica	MD15G1315100.v1.1
prunus_persica	Prupe.6G196600_v2.0.a1
pyrus_communis	pycom15g27840
rosa_chinensis	RchiOBHm_Chr2g0111711
rosa_laevigata	RLG00000017919
rosa_multiflora	Rmu_sc0000448.1_g000011
rosa_roxburghii	Rroxscaffold_2G00132150
rosa_rugosa	Rorug02G0175600 Rorug02G0175700
rosa_samantha	Rh2AG228600 Rh2BG240900 Rh2CG232000 Rh2DG236600
rosa_wichuraiana	Rw2G017660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	610
AccB1I	GGYRCC	1 cut(s)	440
AccBSI	CCGCTC	1 cut(s)	20
AccII	CGCG	3 cut(s)	51, 243, 347
AcoI	YGGCCR	2 cut(s)	52, 352
AcuI	CTGAAG	1 cut(s)	333
AfaI	GTAC	3 cut(s)	13, 296, 416
AfiI	CCNNNNNNNGG	1 cut(s)	50
AgsI	TTSAA	2 cut(s)	571, 605
AluBI	AGCT	6 cut(s)	7, 29, 105, 470, 482, 552
AluI	AGCT	6 cut(s)	7, 29, 105, 470, 482, 552
Alw26I	GTCTC	1 cut(s)	37
AlwNI	CAGNNNCTG	1 cut(s)	625
AoxI	GGCC	3 cut(s)	52, 215, 352
ApaI	GGGCCC	1 cut(s)	219
ApeKI	GCWGC	3 cut(s)	4, 188, 230
AspLEI	GCGC	1 cut(s)	243
AspS9I	GGNCC	2 cut(s)	215, 216
BaeGI	GKGCMC	2 cut(s)	219, 279
BalI	TGGCCA	1 cut(s)	354
BanI	GGYRCC	1 cut(s)	440
BanII	GRGCYC	1 cut(s)	219
BbvCI	CCTCAGC	1 cut(s)	101
BbvI	GCAGC	3 cut(s)	16, 200, 217
BccI	CCATC	1 cut(s)	81
BciVI	GTATCC	2 cut(s)	268, 527
BcoDI	GTCTC	1 cut(s)	37
BfuAI	ACCTGC	1 cut(s)	610
BfuI	GTATCC	2 cut(s)	268, 527
BisI	GCNGC	8 cut(s)	5, 18, 52, 61, 189, 231, 244, 253
BlsI	GCNGC	8 cut(s)	6, 19, 53, 62, 190, 232, 245, 254
BmgT120I	GGNCC	2 cut(s)	215, 216
BmiI	GGNNCC	2 cut(s)	217, 442
BmsI	GCATC	2 cut(s)	322, 473
Bpu10I	CCTNAGC	1 cut(s)	101
BsaAI	YACGTR	1 cut(s)	414
BsaJI	CCNNGG	2 cut(s)	49, 261
BsaXI	ACNNNNNCTCC	3 cut(s)	34, 102, 132
Bsc4I	CCNNNNNNNGG	1 cut(s)	50
BseDI	CCNNGG	2 cut(s)	49, 261
BseGI	GGATG	1 cut(s)	274
BseLI	CCNNNNNNNGG	1 cut(s)	50
BseMII	CTCAG	1 cut(s)	115
BseSI	GKGCMC	2 cut(s)	219, 279
BseXI	GCAGC	3 cut(s)	16, 200, 217
Bsh1236I	CGCG	3 cut(s)	51, 243, 347
BshFI	GGCC	3 cut(s)	54, 217, 354
BshNI	GGYRCC	1 cut(s)	440
BsiSI	CCGG	1 cut(s)	157
BslI	CCNNNNNNNGG	1 cut(s)	50
BsmAI	GTCTC	1 cut(s)	37
BsnI	GGCC	3 cut(s)	54, 217, 354
Bsp120I	GGGCCC	1 cut(s)	215
Bsp1286I	GDGCHC	2 cut(s)	219, 279
Bsp1407I	TGTACA	2 cut(s)	11, 294
BspANI	GGCC	3 cut(s)	54, 217, 354
BspCNI	CTCAG	1 cut(s)	114
BspFNI	CGCG	3 cut(s)	51, 243, 347
BspLI	GGNNCC	2 cut(s)	217, 442
BspMI	ACCTGC	1 cut(s)	610
BspQI	GCTCTTC	1 cut(s)	231
BspT107I	GGYRCC	1 cut(s)	440
BsrBI	CCGCTC	1 cut(s)	20
BsrGI	TGTACA	2 cut(s)	11, 294
BssECI	CCNNGG	2 cut(s)	49, 261
BssT1I	CCWWGG	1 cut(s)	261
Bst4CI	ACNGT	1 cut(s)	541
Bst6I	CTCTTC	1 cut(s)	231
BstAUI	TGTACA	2 cut(s)	11, 294
BstBAI	YACGTR	1 cut(s)	414
BstDEI	CTNAG	1 cut(s)	101
BstDSI	CCRYGG	1 cut(s)	49
BstF5I	GGATG	1 cut(s)	274
BstFNI	CGCG	3 cut(s)	51, 243, 347
BstHHI	GCGC	1 cut(s)	243
BstMAI	GTCTC	1 cut(s)	37
BstMWI	GCNNNNNNNGC	8 cut(s)	26, 57, 60, 69, 188, 249, 252, 449
BstSLI	GKGCMC	2 cut(s)	219, 279
BstSNI	TACGTA	1 cut(s)	414
BstUI	CGCG	3 cut(s)	51, 243, 347
BstV1I	GCAGC	3 cut(s)	16, 200, 217
BsuI	GTATCC	2 cut(s)	268, 527
BsuRI	GGCC	3 cut(s)	54, 217, 354
BtgI	CCRYGG	1 cut(s)	49
BtsCI	GGATG	1 cut(s)	274
BveI	ACCTGC	1 cut(s)	610
CaiI	CAGNNNCTG	1 cut(s)	625
CfoI	GCGC	1 cut(s)	243
Cfr13I	GGNCC	2 cut(s)	215, 216
Cfr42I	CCGCGG	1 cut(s)	52
CseI	GACGC	1 cut(s)	353
Csp6I	GTAC	3 cut(s)	12, 295, 415
CviAII	CATG	1 cut(s)	138
CviQI	GTAC	3 cut(s)	12, 295, 415
DdeI	CTNAG	1 cut(s)	101
EaeI	YGGCCR	2 cut(s)	52, 352
Eam1104I	CTCTTC	1 cut(s)	231
EarI	CTCTTC	1 cut(s)	231
Eco105I	TACGTA	1 cut(s)	414
Eco130I	CCWWGG	1 cut(s)	261
Eco24I	GRGCYC	1 cut(s)	219
Eco57I	CTGAAG	1 cut(s)	333
EcoT14I	CCWWGG	1 cut(s)	261
EcoT38I	GRGCYC	1 cut(s)	219
ErhI	CCWWGG	1 cut(s)	261
FaeI	CATG	1 cut(s)	141
FaiI	YATR	4 cut(s)	139, 228, 430, 432
FatI	CATG	1 cut(s)	137
FauI	CCCGC	1 cut(s)	340
Fnu4HI	GCNGC	8 cut(s)	5, 18, 52, 61, 189, 231, 244, 253
FokI	GGATG	1 cut(s)	281
FriOI	GRGCYC	1 cut(s)	219
Fsp4HI	GCNGC	8 cut(s)	5, 18, 52, 61, 189, 231, 244, 253
GlaI	GCGC	1 cut(s)	242
GluI	GCNGC	8 cut(s)	5, 18, 52, 61, 189, 231, 244, 253
HaeIII	GGCC	3 cut(s)	54, 217, 354
HapII	CCGG	1 cut(s)	157
HgaI	GACGC	1 cut(s)	353
HhaI	GCGC	1 cut(s)	243
Hin1II	CATG	1 cut(s)	141
Hin6I	GCGC	1 cut(s)	241
HinP1I	GCGC	1 cut(s)	241
HinfI	GANTC	3 cut(s)	86, 289, 488
HpaII	CCGG	1 cut(s)	157
Hpy188I	TCNGA	3 cut(s)	199, 564, 634
Hpy188III	TCNNGA	3 cut(s)	168, 505, 571
HpyAV	CCTTC	1 cut(s)	131
HpyCH4III	ACNGT	1 cut(s)	541
HpyCH4IV	ACGT	1 cut(s)	413
HpyCH4V	TGCA	3 cut(s)	4, 335, 361
HpyF10VI	GCNNNNNNNGC	8 cut(s)	26, 57, 60, 69, 188, 249, 252, 449
HpyF3I	CTNAG	1 cut(s)	101
HpySE526I	ACGT	1 cut(s)	413
Hsp92II	CATG	1 cut(s)	141
HspAI	GCGC	1 cut(s)	241
KspI	CCGCGG	1 cut(s)	52
LguI	GCTCTTC	1 cut(s)	231
LmnI	GCTCC	2 cut(s)	25, 479
LpnPI	CCDG	6 cut(s)	170, 294, 500, 529, 605, 611
Lsp1109I	GCAGC	3 cut(s)	16, 200, 217
LweI	GCATC	2 cut(s)	322, 473
MaeII	ACGT	1 cut(s)	413
MaeIII	GTNAC	1 cut(s)	380
MbiI	CCGCTC	1 cut(s)	20
MboII	GAAGA	5 cut(s)	212, 248, 326, 329, 341
MhlI	GDGCHC	2 cut(s)	219, 279
MlsI	TGGCCA	1 cut(s)	354
MluNI	TGGCCA	1 cut(s)	354
MlyI	GAGTC	1 cut(s)	80
MmeI	TCCRAC	3 cut(s)	60, 378, 457
MnlI	CCTC	5 cut(s)	50, 110, 124, 259, 395
Mox20I	TGGCCA	1 cut(s)	354
MscI	TGGCCA	1 cut(s)	354
MseI	TTAA	3 cut(s)	324, 392, 612
Msp20I	TGGCCA	1 cut(s)	354
MspA1I	CMGCKG	2 cut(s)	51, 470
MspI	CCGG	1 cut(s)	157
MvnI	CGCG	3 cut(s)	51, 243, 347
MwoI	GCNNNNNNNGC	8 cut(s)	26, 57, 60, 69, 188, 249, 252, 449
NlaIII	CATG	1 cut(s)	141
NlaIV	GGNNCC	2 cut(s)	217, 442
PciSI	GCTCTTC	1 cut(s)	231
PfeI	GAWTC	2 cut(s)	289, 488
PkrI	GCNGC	8 cut(s)	6, 19, 53, 62, 190, 232, 245, 254
PleI	GAGTC	1 cut(s)	80
PpsI	GAGTC	1 cut(s)	80
Ppu21I	YACGTR	1 cut(s)	414
PspN4I	GGNNCC	2 cut(s)	217, 442
PspOMI	GGGCCC	1 cut(s)	215
PspPI	GGNCC	2 cut(s)	215, 216
PstNI	CAGNNNCTG	1 cut(s)	625
PvuII	CAGCTG	1 cut(s)	470
RsaI	GTAC	3 cut(s)	13, 296, 416
RsaNI	GTAC	3 cut(s)	12, 295, 415
SacII	CCGCGG	1 cut(s)	52
SapI	GCTCTTC	1 cut(s)	231
SaqAI	TTAA	3 cut(s)	324, 392, 612
SatI	GCNGC	8 cut(s)	5, 18, 52, 61, 189, 231, 244, 253
Sau96I	GGNCC	2 cut(s)	215, 216
SchI	GAGTC	1 cut(s)	80
SduI	GDGCHC	2 cut(s)	219, 279
SfaNI	GCATC	2 cut(s)	322, 473
Sfr303I	CCGCGG	1 cut(s)	52
SgrBI	CCGCGG	1 cut(s)	52
SnaBI	TACGTA	1 cut(s)	414
StyI	CCWWGG	1 cut(s)	261
TaaI	ACNGT	1 cut(s)	541
TaiI	ACGT	1 cut(s)	416
TaqI	TCGA	4 cut(s)	107, 169, 369, 387
TaqII	GACCGA	1 cut(s)	515
TatI	WGTACW	2 cut(s)	11, 294
TauI	GCSGC	5 cut(s)	20, 54, 63, 246, 255
TfiI	GAWTC	2 cut(s)	289, 488
Tru1I	TTAA	3 cut(s)	324, 392, 612
Tru9I	TTAA	3 cut(s)	324, 392, 612
TseI	GCWGC	3 cut(s)	4, 188, 230
TspGWI	ACGGA	1 cut(s)	486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.