Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0014374

Physical Location & Seq

Genomic Coordinates Reverse (-)

23574072 .. 23578491

Gene Structure 4420 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG236600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGAGCTCTGTACCACCACATATCAACCTCTCCCCAATCTTCTCATCACAAACCCTAACACCAACAACCTCCGCCCAAAACCCTCACTCCAATTCGCACAGTCACGCCACTCTCTCAGCCTCCGCTCTCGTTTGCTTTCGATTAGAGCTACATCTTCTGAAGAAAGTGGGGGAAATGTGTATTCTGGTGAAGAGCGTGATGGGGTGGTATCCACTTATGATGTTCCACCGCCGGAAAAGAATGTTTATGGTCAAGCTGTGGTAGAAGAAGCAGCTCAAGAGGACAGCATTGTGAATGGCAGTGATGGCCAATCGCAGATATCTGAGTTTTTGGAGAACTTTAATGTAAAGTTGGACAATGATGATGCATATGTCTATCTACTATACGGTAGTGGTGCCTTGGTTACCCTGTGGTTAGCATCAGCTATCATAGGTGCTATTGATTCTATTCCATTGGTGCGTTACCCTAGTCGTTTTTATGTGAGTCTATTGATTTACAATTGTAAGTACTGCCCTTTCTCTGGTATACTGATGACGCTCATTATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CAAD

Protein Analysis

182

Amino Acids

20.09

Weight (kDa)

4.64

Isoelectric Point (pI)

49.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014374)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38100 AT4G38100
fragaria_vesca	FvH4_1g19890
malus_domestica	MD15G1315100.v1.1
prunus_persica	Prupe.6G196600_v2.0.a1
pyrus_communis	pycom15g27840
rosa_chinensis	RchiOBHm_Chr2g0111711
rosa_laevigata	RLG00000017919
rosa_multiflora	Rmu_sc0000448.1_g000011
rosa_roxburghii	Rroxscaffold_2G00132150
rosa_rugosa	Rorug02G0175600 Rorug02G0175700
rosa_samantha	Rh2AG228600 Rh2BG240900 Rh2CG232000 Rh2DG236600
rosa_wichuraiana	Rw2G017660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	395
AccBSI	CCGCTC	1 cut(s)	126
AccI	GTMKAC	1 cut(s)	526
AciI	CCGC	3 cut(s)	73, 124, 230
AcoI	YGGCCR	1 cut(s)	307
AcuI	CTGAAG	1 cut(s)	180
AfaI	GTAC	2 cut(s)	13, 509
AfiI	CCNNNNNNNGG	1 cut(s)	521
AluBI	AGCT	5 cut(s)	7, 149, 257, 275, 425
AluI	AGCT	5 cut(s)	7, 149, 257, 275, 425
Alw21I	GWGCWC	1 cut(s)	9
AoxI	GGCC	1 cut(s)	307
ApeKI	GCWGC	1 cut(s)	272
AsuHPI	GGTGA	1 cut(s)	200
BalI	TGGCCA	1 cut(s)	309
BanI	GGYRCC	1 cut(s)	395
BanII	GRGCYC	1 cut(s)	9
Bbv12I	GWGCWC	1 cut(s)	9
BbvI	GCAGC	1 cut(s)	284
BccI	CCATC	2 cut(s)	194, 299
BciVI	GTATCC	1 cut(s)	220
BfaI	CTAG	1 cut(s)	468
BfuI	GTATCC	1 cut(s)	220
BisI	GCNGC	1 cut(s)	273
BlsI	GCNGC	1 cut(s)	274
BmcAI	AGTACT	1 cut(s)	509
BmiI	GGNNCC	1 cut(s)	397
BmsI	GCATC	2 cut(s)	355, 428
BpuEI	CTTGAG	1 cut(s)	261
BsaJI	CCNNGG	1 cut(s)	399
BsaXI	ACNNNNNCTCC	2 cut(s)	72, 102
Bsc4I	CCNNNNNNNGG	1 cut(s)	521
BseDI	CCNNGG	1 cut(s)	399
BseLI	CCNNNNNNNGG	1 cut(s)	521
BseMII	CTCAG	2 cut(s)	130, 315
BseXI	GCAGC	1 cut(s)	284
BshFI	GGCC	1 cut(s)	309
BshNI	GGYRCC	1 cut(s)	395
BsiHKAI	GWGCWC	1 cut(s)	9
BsiSI	CCGG	1 cut(s)	233
BslI	CCNNNNNNNGG	1 cut(s)	521
BsnI	GGCC	1 cut(s)	309
Bsp1286I	GDGCHC	1 cut(s)	9
BspACI	CCGC	3 cut(s)	73, 124, 230
BspANI	GGCC	1 cut(s)	309
BspCNI	CTCAG	2 cut(s)	129, 316
BspLI	GGNNCC	1 cut(s)	397
BspQI	GCTCTTC	1 cut(s)	186
BspT107I	GGYRCC	1 cut(s)	395
BsrBI	CCGCTC	1 cut(s)	126
BssECI	CCNNGG	1 cut(s)	399
BssNAI	GTATAC	1 cut(s)	527
BssT1I	CCWWGG	1 cut(s)	399
Bst1107I	GTATAC	1 cut(s)	527
Bst4CI	ACNGT	2 cut(s)	102, 389
Bst6I	CTCTTC	1 cut(s)	186
BstDEI	CTNAG	2 cut(s)	116, 324
BstEII	GGTNACC	1 cut(s)	403
BstMWI	GCNNNNNNNGC	1 cut(s)	306
BstPI	GGTNACC	1 cut(s)	403
BstV1I	GCAGC	1 cut(s)	284
BstZ17I	GTATAC	1 cut(s)	527
BsuI	GTATCC	1 cut(s)	220
BsuRI	GGCC	1 cut(s)	309
BtsI	GCAGTG	1 cut(s)	307
BtsIMutI	CAGTG	1 cut(s)	307
CseI	GACGC	1 cut(s)	544
Csp6I	GTAC	2 cut(s)	12, 508
CviJI	RGCY	7 cut(s)	7, 120, 149, 257, 275, 309, 425
CviKI_1	RGCY	7 cut(s)	7, 120, 149, 257, 275, 309, 425
CviQI	GTAC	2 cut(s)	12, 508
DdeI	CTNAG	2 cut(s)	116, 324
EaeI	YGGCCR	1 cut(s)	307
Eam1104I	CTCTTC	1 cut(s)	186
EarI	CTCTTC	1 cut(s)	186
EciI	GGCGGA	1 cut(s)	62
Ecl136II	GAGCTC	1 cut(s)	7
Eco130I	CCWWGG	1 cut(s)	399
Eco24I	GRGCYC	1 cut(s)	9
Eco32I	GATATC	1 cut(s)	321
Eco53kI	GAGCTC	1 cut(s)	7
Eco57I	CTGAAG	1 cut(s)	180
Eco91I	GGTNACC	1 cut(s)	403
EcoICRI	GAGCTC	1 cut(s)	7
EcoO65I	GGTNACC	1 cut(s)	403
EcoRV	GATATC	1 cut(s)	321
EcoT14I	CCWWGG	1 cut(s)	399
EcoT22I	ATGCAT	1 cut(s)	370
EcoT38I	GRGCYC	1 cut(s)	9
ErhI	CCWWGG	1 cut(s)	399
FauNDI	CATATG	1 cut(s)	370
FblI	GTMKAC	1 cut(s)	526
Fnu4HI	GCNGC	1 cut(s)	273
FriOI	GRGCYC	1 cut(s)	9
Fsp4HI	GCNGC	1 cut(s)	273
FspBI	CTAG	1 cut(s)	468
GluI	GCNGC	1 cut(s)	273
HaeIII	GGCC	1 cut(s)	309
HapII	CCGG	1 cut(s)	233
HgaI	GACGC	1 cut(s)	544
HinfI	GANTC	2 cut(s)	443, 484
HpaII	CCGG	1 cut(s)	233
HphI	GGTGA	1 cut(s)	200
Hpy166II	GTNNAC	1 cut(s)	527
Hpy188I	TCNGA	2 cut(s)	160, 325
Hpy188III	TCNNGA	1 cut(s)	278
Hpy8I	GTNNAC	1 cut(s)	527
HpyCH4III	ACNGT	2 cut(s)	102, 389
HpyCH4V	TGCA	1 cut(s)	368
HpyF10VI	GCNNNNNNNGC	1 cut(s)	306
HpyF3I	CTNAG	2 cut(s)	116, 324
LguI	GCTCTTC	1 cut(s)	186
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	4 cut(s)	171, 246, 422, 507
Lsp1109I	GCAGC	1 cut(s)	284
LweI	GCATC	2 cut(s)	355, 428
MaeI	CTAG	1 cut(s)	468
MaeIII	GTNAC	3 cut(s)	102, 403, 461
MbiI	CCGCTC	1 cut(s)	126
MboII	GAAGA	5 cut(s)	32, 147, 173, 203, 278
MfeI	CAATTG	1 cut(s)	499
MhlI	GDGCHC	1 cut(s)	9
MlsI	TGGCCA	1 cut(s)	309
MluCI	AATT	2 cut(s)	92, 499
MluNI	TGGCCA	1 cut(s)	309
MlyI	GAGTC	1 cut(s)	493
MmeI	TCCRAC	1 cut(s)	333
MnlI	CCTC	5 cut(s)	39, 80, 94, 131, 274
Mox20I	TGGCCA	1 cut(s)	309
Mph1103I	ATGCAT	1 cut(s)	370
MscI	TGGCCA	1 cut(s)	309
MseI	TTAA	1 cut(s)	342
Msp20I	TGGCCA	1 cut(s)	309
MspI	CCGG	1 cut(s)	233
MunI	CAATTG	1 cut(s)	499
MwoI	GCNNNNNNNGC	1 cut(s)	306
NdeI	CATATG	1 cut(s)	370
NlaIV	GGNNCC	1 cut(s)	397
NmuCI	GTSAC	1 cut(s)	102
NsiI	ATGCAT	1 cut(s)	370
PciSI	GCTCTTC	1 cut(s)	186
PfeI	GAWTC	1 cut(s)	443
PkrI	GCNGC	1 cut(s)	274
PleI	GAGTC	1 cut(s)	492
PpsI	GAGTC	1 cut(s)	492
Psp124BI	GAGCTC	1 cut(s)	9
PspEI	GGTNACC	1 cut(s)	403
PspN4I	GGNNCC	1 cut(s)	397
RsaI	GTAC	2 cut(s)	13, 509
RsaNI	GTAC	2 cut(s)	12, 508
SacI	GAGCTC	1 cut(s)	9
SapI	GCTCTTC	1 cut(s)	186
SaqAI	TTAA	1 cut(s)	342
SatI	GCNGC	1 cut(s)	273
ScaI	AGTACT	1 cut(s)	509
SchI	GAGTC	1 cut(s)	493
SduI	GDGCHC	1 cut(s)	9
SetI	ASST	8 cut(s)	9, 31, 72, 151, 259, 277, 427, 436
SfaNI	GCATC	2 cut(s)	355, 428
SmlI	CTYRAG	1 cut(s)	276
SmoI	CTYRAG	1 cut(s)	276
Sse9I	AATT	2 cut(s)	92, 499
SsiI	CCGC	3 cut(s)	73, 124, 230
SspMI	CTAG	1 cut(s)	468
SstI	GAGCTC	1 cut(s)	9
StyI	CCWWGG	1 cut(s)	399
TaaI	ACNGT	2 cut(s)	102, 389
TaqI	TCGA	1 cut(s)	140
TasI	AATT	2 cut(s)	92, 499
TatI	WGTACW	1 cut(s)	507
TfiI	GAWTC	1 cut(s)	443
Tru1I	TTAA	1 cut(s)	342
Tru9I	TTAA	1 cut(s)	342
TscAI	CASTG	1 cut(s)	307
TseFI	GTSAC	1 cut(s)	102
TseI	GCWGC	1 cut(s)	272
Tsp45I	GTSAC	1 cut(s)	102
TspRI	CASTG	1 cut(s)	307
XmiI	GTMKAC	1 cut(s)	526
XspI	CTAG	1 cut(s)	468
ZrmI	AGTACT	1 cut(s)	509
Zsp2I	ATGCAT	1 cut(s)	370

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.