Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0014374

Physical Location & Seq

Genomic Coordinates Forward (+)

69163194 .. 69165931

Gene Structure 2738 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00132150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGAGCTCTGTACCACCACATGTCAACCTCTCCCCAATCTCCTCATCACAAACCCTAACACCAACAACCTCCGCCCAAAACCCTCACTCCAATTCGCACAATCACGCCACTCTCTCAGCCTTCGCTCTCGTTTGCTTTCGATTAGAGCTACTGAAGAAAGTGGGGGAAGTGCGTATTCTGGTGAAGAGCGTGATGGGGTGGTATCCACTTATGATGTTCCACCGCCCGAAAAGATTGTTTATGGTCAAGCTGTGGTAGAAGAAGCACCTCAAGAGGGCAGCATTGTGAATGGCAGTGATGGTGGCCAATCGCAGATATCTGAGTTTTTGGAGAACTTTAATGTAAAGTTGGACAATGATGATGCATATGTCTATCTACTATACGGTAGTGGTGCCTTGGTTACCCTGTGGTTAGCATCAGCTATCATAGGTGCTATTGATTCTATTCCATTGCTCCCCAAGTTGATGGAAGTTGTGGGTCTTGGATACACAATCTGGTTTAGCAGTCGTTATCTGATATTCAAGAAAAACAGGGAGGAGTTCGTTGCTAAAGTCCAAGTTCTTAAGCAGCAGGTTCTTGGTTCAAATGATGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CAAD

Protein Analysis

198

Amino Acids

21.74

Weight (kDa)

4.8

Isoelectric Point (pI)

41.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CAAD	PF14159	119 - 194	5.3e-26	CAAD domains of cyanobacterial aminoacyl-tRNA synthetase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0014374)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38100 AT4G38100
fragaria_vesca	FvH4_1g19890
malus_domestica	MD15G1315100.v1.1
prunus_persica	Prupe.6G196600_v2.0.a1
pyrus_communis	pycom15g27840
rosa_chinensis	RchiOBHm_Chr2g0111711
rosa_laevigata	RLG00000017919
rosa_multiflora	Rmu_sc0000448.1_g000011
rosa_roxburghii	Rroxscaffold_2G00132150
rosa_rugosa	Rorug02G0175600 Rorug02G0175700
rosa_samantha	Rh2AG228600 Rh2BG240900 Rh2CG232000 Rh2DG236600
rosa_wichuraiana	Rw2G017660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	562
AccB1I	GGYRCC	1 cut(s)	392
AciI	CCGC	2 cut(s)	73, 224
AcoI	YGGCCR	1 cut(s)	304
AcuI	CTGAAG	1 cut(s)	174
AfaI	GTAC	1 cut(s)	13
AfiI	CCNNNNNNNGG	1 cut(s)	275
AflII	CTTAAG	1 cut(s)	563
AflIII	ACRYGT	1 cut(s)	20
AgsI	TTSAA	2 cut(s)	523, 585
AluBI	AGCT	4 cut(s)	7, 149, 251, 422
AluI	AGCT	4 cut(s)	7, 149, 251, 422
Alw21I	GWGCWC	1 cut(s)	9
AoxI	GGCC	1 cut(s)	304
ApeKI	GCWGC	2 cut(s)	279, 568
AsuHPI	GGTGA	1 cut(s)	194
BalI	TGGCCA	1 cut(s)	306
BanI	GGYRCC	1 cut(s)	392
BanII	GRGCYC	1 cut(s)	9
Bbv12I	GWGCWC	1 cut(s)	9
BbvI	GCAGC	2 cut(s)	291, 580
BccI	CCATC	3 cut(s)	188, 293, 460
BciVI	GTATCC	2 cut(s)	214, 479
BfrI	CTTAAG	1 cut(s)	563
BfuAI	ACCTGC	1 cut(s)	562
BfuI	GTATCC	2 cut(s)	214, 479
BisI	GCNGC	2 cut(s)	280, 569
BlsI	GCNGC	2 cut(s)	281, 570
BmiI	GGNNCC	1 cut(s)	394
BmsI	GCATC	2 cut(s)	352, 425
BpuEI	CTTGAG	1 cut(s)	255
BsaJI	CCNNGG	1 cut(s)	396
BsaXI	ACNNNNNCTCC	2 cut(s)	72, 102
Bsc4I	CCNNNNNNNGG	1 cut(s)	275
Bse3DI	GCAATG	1 cut(s)	449
BseDI	CCNNGG	1 cut(s)	396
BseLI	CCNNNNNNNGG	1 cut(s)	275
BseMI	GCAATG	1 cut(s)	449
BseMII	CTCAG	2 cut(s)	130, 312
BseRI	GAGGAG	2 cut(s)	32, 551
BseXI	GCAGC	2 cut(s)	291, 580
BshFI	GGCC	1 cut(s)	306
BshNI	GGYRCC	1 cut(s)	392
BsiHKAI	GWGCWC	1 cut(s)	9
BslI	CCNNNNNNNGG	1 cut(s)	275
BsnI	GGCC	1 cut(s)	306
Bsp1286I	GDGCHC	1 cut(s)	9
BspACI	CCGC	2 cut(s)	73, 224
BspANI	GGCC	1 cut(s)	306
BspCNI	CTCAG	2 cut(s)	129, 313
BspLI	GGNNCC	1 cut(s)	394
BspMI	ACCTGC	1 cut(s)	562
BspQI	GCTCTTC	1 cut(s)	180
BspT107I	GGYRCC	1 cut(s)	392
BspTI	CTTAAG	1 cut(s)	563
BsrDI	GCAATG	1 cut(s)	449
BssECI	CCNNGG	1 cut(s)	396
BssT1I	CCWWGG	1 cut(s)	396
Bst4CI	ACNGT	1 cut(s)	386
Bst6I	CTCTTC	1 cut(s)	180
BstAFI	CTTAAG	1 cut(s)	563
BstDEI	CTNAG	2 cut(s)	116, 321
BstEII	GGTNACC	1 cut(s)	400
BstNSI	RCATGY	1 cut(s)	24
BstPI	GGTNACC	1 cut(s)	400
BstV1I	GCAGC	2 cut(s)	291, 580
BstXI	CCANNNNNNTGG	1 cut(s)	466
BsuI	GTATCC	2 cut(s)	214, 479
BsuRI	GGCC	1 cut(s)	306
BtsI	GCAGTG	1 cut(s)	301
BtsIMutI	CAGTG	1 cut(s)	301
BveI	ACCTGC	1 cut(s)	562
Csp6I	GTAC	1 cut(s)	12
CviAII	CATG	1 cut(s)	21
CviJI	RGCY	6 cut(s)	7, 120, 149, 251, 306, 422
CviKI_1	RGCY	6 cut(s)	7, 120, 149, 251, 306, 422
CviQI	GTAC	1 cut(s)	12
DdeI	CTNAG	2 cut(s)	116, 321
EaeI	YGGCCR	1 cut(s)	304
Eam1104I	CTCTTC	1 cut(s)	180
EarI	CTCTTC	1 cut(s)	180
EciI	GGCGGA	1 cut(s)	62
Ecl136II	GAGCTC	1 cut(s)	7
Eco130I	CCWWGG	1 cut(s)	396
Eco24I	GRGCYC	1 cut(s)	9
Eco32I	GATATC	1 cut(s)	318
Eco53kI	GAGCTC	1 cut(s)	7
Eco57I	CTGAAG	1 cut(s)	174
Eco91I	GGTNACC	1 cut(s)	400
EcoICRI	GAGCTC	1 cut(s)	7
EcoO65I	GGTNACC	1 cut(s)	400
EcoRV	GATATC	1 cut(s)	318
EcoT14I	CCWWGG	1 cut(s)	396
EcoT22I	ATGCAT	1 cut(s)	367
EcoT38I	GRGCYC	1 cut(s)	9
ErhI	CCWWGG	1 cut(s)	396
FaeI	CATG	1 cut(s)	24
FaiI	YATR	7 cut(s)	22, 213, 243, 367, 369, 382, 428
FatI	CATG	1 cut(s)	20
FauNDI	CATATG	1 cut(s)	367
Fnu4HI	GCNGC	2 cut(s)	280, 569
FriOI	GRGCYC	1 cut(s)	9
Fsp4HI	GCNGC	2 cut(s)	280, 569
GluI	GCNGC	2 cut(s)	280, 569
HaeIII	GGCC	1 cut(s)	306
Hin1II	CATG	1 cut(s)	24
HincII	GTYRAC	1 cut(s)	26
HindII	GTYRAC	1 cut(s)	26
HinfI	GANTC	1 cut(s)	440
HphI	GGTGA	1 cut(s)	194
Hpy166II	GTNNAC	1 cut(s)	26
Hpy188I	TCNGA	2 cut(s)	322, 516
Hpy188III	TCNNGA	2 cut(s)	272, 523
Hpy8I	GTNNAC	1 cut(s)	26
HpyAV	CCTTC	1 cut(s)	131
HpyCH4III	ACNGT	1 cut(s)	386
HpyCH4V	TGCA	1 cut(s)	365
HpyF3I	CTNAG	2 cut(s)	116, 321
Hsp92II	CATG	1 cut(s)	24
LguI	GCTCTTC	1 cut(s)	180
LmnI	GCTCC	2 cut(s)	4, 459
LpnPI	CCDG	5 cut(s)	165, 419, 481, 517, 557
Lsp1109I	GCAGC	2 cut(s)	291, 580
LweI	GCATC	2 cut(s)	352, 425
MaeIII	GTNAC	1 cut(s)	400
MboII	GAAGA	3 cut(s)	167, 197, 272
MhlI	GDGCHC	1 cut(s)	9
MlsI	TGGCCA	1 cut(s)	306
MluCI	AATT	1 cut(s)	92
MluNI	TGGCCA	1 cut(s)	306
MmeI	TCCRAC	1 cut(s)	330
MnlI	CCTC	7 cut(s)	39, 53, 80, 94, 268, 279, 529
Mox20I	TGGCCA	1 cut(s)	306
Mph1103I	ATGCAT	1 cut(s)	367
MscI	TGGCCA	1 cut(s)	306
MseI	TTAA	2 cut(s)	339, 564
Msp20I	TGGCCA	1 cut(s)	306
MspCI	CTTAAG	1 cut(s)	563
NdeI	CATATG	1 cut(s)	367
NlaIII	CATG	1 cut(s)	24
NlaIV	GGNNCC	1 cut(s)	394
NsiI	ATGCAT	1 cut(s)	367
NspI	RCATGY	1 cut(s)	24
PciI	ACATGT	1 cut(s)	20
PciSI	GCTCTTC	1 cut(s)	180
PfeI	GAWTC	1 cut(s)	440
PkrI	GCNGC	2 cut(s)	281, 570
PscI	ACATGT	1 cut(s)	20
Psp124BI	GAGCTC	1 cut(s)	9
PspEI	GGTNACC	1 cut(s)	400
PspN4I	GGNNCC	1 cut(s)	394
RsaI	GTAC	1 cut(s)	13
RsaNI	GTAC	1 cut(s)	12
SacI	GAGCTC	1 cut(s)	9
SapI	GCTCTTC	1 cut(s)	180
SaqAI	TTAA	2 cut(s)	339, 564
SatI	GCNGC	2 cut(s)	280, 569
SduI	GDGCHC	1 cut(s)	9
SetI	ASST	9 cut(s)	9, 31, 72, 151, 253, 271, 424, 433, 576
SfaNI	GCATC	2 cut(s)	352, 425
SmlI	CTYRAG	2 cut(s)	270, 563
SmoI	CTYRAG	2 cut(s)	270, 563
Sse9I	AATT	1 cut(s)	92
SsiI	CCGC	2 cut(s)	73, 224
SstI	GAGCTC	1 cut(s)	9
StyI	CCWWGG	1 cut(s)	396
TaaI	ACNGT	1 cut(s)	386
TaqI	TCGA	1 cut(s)	140
TasI	AATT	1 cut(s)	92
TfiI	GAWTC	1 cut(s)	440
Tru1I	TTAA	2 cut(s)	339, 564
Tru9I	TTAA	2 cut(s)	339, 564
TscAI	CASTG	1 cut(s)	301
TseI	GCWGC	2 cut(s)	279, 568
TspRI	CASTG	1 cut(s)	301
Vha464I	CTTAAG	1 cut(s)	563
XceI	RCATGY	1 cut(s)	24
Zsp2I	ATGCAT	1 cut(s)	367

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.