Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0014374

Physical Location & Seq

Genomic Coordinates Reverse (-)

16150002 .. 16153386

Gene Structure 3385 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0175700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGGACCGCAAGCTTGTGGTTTTGGGCATTCCATGGGATATTGATACAGACGGGTTGAGAGAGTATATGAGCAAATATGGGGAATTGGAGGATTGTATTGTAATGAAGGAGCGGTCAACTGGCCGATCTCGTGGATTTGGATATGTAACGTTTGCATCAGCTGAGGATGCCAAGAGTGTGTCATCAAGTGAGCACTTTCTTGGTAATAGAATGCTGGAAGTTAAAGTGGCTACCCCAAAGGAAGAGATGAGAGCACCTGCAAGAAAAGTTACCAGGATATTTGTTGCAAGGATCCCACAATCTGTGACAGAAGCAAACTTTCGAGGTCATTTTGGGAAATATGGAGAGATAACAGATTTATACATGCCGAAGGATCAAGGCTCAAAAATGCATCGAGGAATTGGGTTTATTACCTTTGAAAATGCAGACTCCGTGGAAAATTTAATGGCTGATACTCATGAATTGGGGGGTTCCAATGTAGTTGTTGATCGAGCAACACCCAAGGCAAATGACTTTAAACCAGTGGGCAGAATGCCAGCACCACAGGGTGGATATGGTGCATACAATGCGTATATCTCTGCAGCCACTAGATATGCAGCCCTTGGGGCTCCAACTTTGTATGATAATCCACCACATCCAGGGCCCGTTTATGGAAGAGGGGAATCTGCTCGAGGATTGAGCAAAAAGATTTTTGTTGGAAGGCTGCCTCAGGAGGCAACTGCTGAAGATCTCCGCCAGTATTTTGGCAGATTTGGCCGTATATTAGATGTCTATGTTCCCAGGGATCCCAAAAGAACTGGCCATAGAGGATTTGGTTTTGTAACATTCGGGGAAGACGGTGTAGCAGATCGTGTATCACGAAGATCTCATGAGATCTGTGGACAGCAGGTTGCAATAGATACAGCCACACCTCTTGATGAAGCTGGTACAAGTGGGAACTATATGATGAACAATGTAGAACCATATGGTGGATATGGTGGTCCTATGCGCCCTTATGGCAGGATGTATGGAAGTCTGGATTTTGACGACTGGGGTTATGGAATGGGCGGTGGGCGACCATCAAGAGCAGATTGGAGGTACAGACCATACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CAAD

Protein Analysis

363

Amino Acids

40.25

Weight (kDa)

8.62

Isoelectric Point (pI)

35.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	5 - 60	1.9e-12	RNA recognition motif
RRM_1	PF00076	93 - 153	1.9e-11	RNA recognition motif
RRM_1	PF00076	230 - 278	9.9e-13	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014374)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38100 AT4G38100
fragaria_vesca	FvH4_1g19890
malus_domestica	MD15G1315100.v1.1
prunus_persica	Prupe.6G196600_v2.0.a1
pyrus_communis	pycom15g27840
rosa_chinensis	RchiOBHm_Chr2g0111711
rosa_laevigata	RLG00000017919
rosa_multiflora	Rmu_sc0000448.1_g000011
rosa_roxburghii	Rroxscaffold_2G00132150
rosa_rugosa	Rorug02G0175600 Rorug02G0175700
rosa_samantha	Rh2AG228600 Rh2BG240900 Rh2CG232000 Rh2DG236600
rosa_wichuraiana	Rw2G017660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	265
Acc36I	ACCTGC	2 cut(s)	265, 877
AccB7I	CCANNNNNTGG	2 cut(s)	548, 968
AccBSI	CCGCTC	1 cut(s)	112
AciI	CCGC	4 cut(s)	7, 112, 733, 1047
AclI	AACGTT	1 cut(s)	149
AclWI	GGATC	5 cut(s)	286, 299, 381, 779, 792
AcoI	YGGCCR	3 cut(s)	121, 754, 799
AcsI	RAATTY	1 cut(s)	439
AcuI	CTGAAG	1 cut(s)	744
AdeI	CACNNNGTG	1 cut(s)	548
AfaI	GTAC	2 cut(s)	928, 1079
AfiI	CCNNNNNNNGG	4 cut(s)	548, 638, 650, 968
AgsI	TTSAA	1 cut(s)	419
AjnI	CCWGG	3 cut(s)	272, 637, 779
AluBI	AGCT	3 cut(s)	13, 161, 923
AluI	AGCT	3 cut(s)	13, 161, 923
Alw21I	GWGCWC	2 cut(s)	195, 256
AlwI	GGATC	5 cut(s)	286, 299, 381, 779, 792
Ama87I	CYCGRG	1 cut(s)	669
AoxI	GGCC	4 cut(s)	121, 641, 754, 799
ApaI	GGGCCC	1 cut(s)	645
ApeKI	GCWGC	3 cut(s)	581, 596, 703
ApoI	RAATTY	1 cut(s)	439
AspLEI	GCGC	1 cut(s)	990
AspS9I	GGNCC	4 cut(s)	4, 641, 642, 980
AvaI	CYCGRG	1 cut(s)	669
AvaII	GGWCC	2 cut(s)	4, 980
AxyI	CCTNAGG	1 cut(s)	708
BaeGI	GKGCMC	1 cut(s)	645
BalI	TGGCCA	1 cut(s)	801
BamHI	GGATCC	2 cut(s)	291, 784
BanII	GRGCYC	2 cut(s)	610, 645
BauI	CACGAG	1 cut(s)	129
BbsI	GAAGAC	1 cut(s)	840
Bbv12I	GWGCWC	2 cut(s)	195, 256
BbvCI	CCTCAGC	1 cut(s)	162
BbvI	GCAGC	3 cut(s)	593, 608, 690
BccI	CCATC	1 cut(s)	1066
BceAI	ACGGC	1 cut(s)	741
BciT130I	CCWGG	3 cut(s)	274, 639, 781
BfaI	CTAG	2 cut(s)	588, 1090
BfmI	CTRYAG	1 cut(s)	579
BfuAI	ACCTGC	2 cut(s)	265, 877
BglI	GCCNNNNNGGC	2 cut(s)	605, 996
BglII	AGATCT	3 cut(s)	727, 863, 873
BisI	GCNGC	3 cut(s)	582, 597, 704
BlsI	GCNGC	3 cut(s)	583, 598, 705
Bme1390I	CCNGG	3 cut(s)	274, 639, 781
Bme18I	GGWCC	2 cut(s)	4, 980
BmeT110I	CYCGRG	1 cut(s)	669
BmgT120I	GGNCC	4 cut(s)	4, 641, 642, 980
BmiI	GGNNCC	5 cut(s)	293, 472, 609, 643, 786
BmrFI	CCNGG	3 cut(s)	274, 639, 781
BmrI	ACTGGG	1 cut(s)	1039
BmsI	GCATC	3 cut(s)	157, 164, 400
BmuI	ACTGGG	1 cut(s)	1039
BpiI	GAAGAC	1 cut(s)	840
Bpu10I	CCTNAGC	1 cut(s)	162
BsaJI	CCNNGG	7 cut(s)	32, 432, 501, 601, 638, 779, 780
Bsc4I	CCNNNNNNNGG	4 cut(s)	548, 638, 650, 968
Bse1I	ACTGG	5 cut(s)	124, 521, 736, 802, 1034
Bse21I	CCTNAGG	1 cut(s)	708
BseBI	CCWGG	3 cut(s)	274, 639, 781
BseDI	CCNNGG	7 cut(s)	32, 432, 501, 601, 638, 779, 780
BseGI	GGATG	3 cut(s)	172, 634, 1008
BseLI	CCNNNNNNNGG	4 cut(s)	548, 638, 650, 968
BseMII	CTCAG	2 cut(s)	153, 722
BseNI	ACTGG	5 cut(s)	124, 521, 736, 802, 1034
BseSI	GKGCMC	1 cut(s)	645
BseXI	GCAGC	3 cut(s)	593, 608, 690
BshFI	GGCC	4 cut(s)	123, 643, 756, 801
BsiHKAI	GWGCWC	2 cut(s)	195, 256
BsiHKCI	CYCGRG	1 cut(s)	669
BslI	CCNNNNNNNGG	4 cut(s)	548, 638, 650, 968
BsmI	GAATGC	3 cut(s)	27, 216, 537
BsnI	GGCC	4 cut(s)	123, 643, 756, 801
BsoBI	CYCGRG	1 cut(s)	669
Bsp120I	GGGCCC	1 cut(s)	641
Bsp1286I	GDGCHC	4 cut(s)	195, 256, 610, 645
Bsp143I	GATC	9 cut(s)	125, 291, 373, 487, 727, 784, 847, 863, 873
Bsp19I	CCATGG	1 cut(s)	32
BspACI	CCGC	4 cut(s)	7, 112, 733, 1047
BspANI	GGCC	4 cut(s)	123, 643, 756, 801
BspCNI	CTCAG	2 cut(s)	154, 721
BspHI	TCATGA	2 cut(s)	457, 868
BspLI	GGNNCC	5 cut(s)	293, 472, 609, 643, 786
BspMAI	CTGCAG	1 cut(s)	583
BspMI	ACCTGC	2 cut(s)	265, 877
BspPI	GGATC	5 cut(s)	286, 299, 381, 779, 792
BsrBI	CCGCTC	1 cut(s)	112
BsrI	ACTGG	5 cut(s)	124, 521, 736, 802, 1034
BssECI	CCNNGG	7 cut(s)	32, 432, 501, 601, 638, 779, 780
BssMI	GATC	9 cut(s)	125, 291, 373, 487, 727, 784, 847, 863, 873
BssSI	CACGAG	1 cut(s)	129
BssT1I	CCWWGG	3 cut(s)	32, 501, 601
Bst2BI	CACGAG	1 cut(s)	129
Bst2UI	CCWGG	3 cut(s)	274, 639, 781
Bst4CI	ACNGT	1 cut(s)	839
Bst6I	CTCTTC	2 cut(s)	237, 649
BstAPI	GCANNNNNTGC	1 cut(s)	566
BstC8I	GCNNGC	2 cut(s)	11, 537
BstDEI	CTNAG	2 cut(s)	162, 708
BstDSI	CCRYGG	2 cut(s)	32, 432
BstF5I	GGATG	3 cut(s)	172, 634, 1008
BstHHI	GCGC	1 cut(s)	990
BstKTI	GATC	9 cut(s)	128, 294, 376, 490, 730, 787, 850, 866, 876
BstMBI	GATC	9 cut(s)	125, 291, 373, 487, 727, 784, 847, 863, 873
BstMWI	GCNNNNNNNGC	5 cut(s)	167, 566, 605, 753, 996
BstNI	CCWGG	3 cut(s)	274, 639, 781
BstNSI	RCATGY	1 cut(s)	367
BstSCI	CCNGG	3 cut(s)	272, 637, 779
BstSFI	CTRYAG	1 cut(s)	579
BstSLI	GKGCMC	1 cut(s)	645
BstV1I	GCAGC	3 cut(s)	593, 608, 690
BstV2I	GAAGAC	1 cut(s)	840
BstX2I	RGATCY	5 cut(s)	291, 727, 784, 863, 873
BstXI	CCANNNNNNTGG	1 cut(s)	743
BstYI	RGATCY	5 cut(s)	291, 727, 784, 863, 873
Bsu36I	CCTNAGG	1 cut(s)	708
BsuRI	GGCC	4 cut(s)	123, 643, 756, 801
BtgI	CCRYGG	2 cut(s)	32, 432
BtsCI	GGATG	3 cut(s)	172, 634, 1008
BtsIMutI	CAGTG	1 cut(s)	528
BveI	ACCTGC	2 cut(s)	265, 877
Cac8I	GCNNGC	2 cut(s)	11, 537
CciI	TCATGA	2 cut(s)	457, 868
CfoI	GCGC	1 cut(s)	990
Cfr13I	GGNCC	4 cut(s)	4, 641, 642, 980
Csp6I	GTAC	2 cut(s)	927, 1078
CspCI	CAANNNNNGTGG	2 cut(s)	895, 930
CviAII	CATG	4 cut(s)	33, 364, 458, 869
CviQI	GTAC	2 cut(s)	927, 1078
DdeI	CTNAG	2 cut(s)	162, 708
DpnI	GATC	9 cut(s)	127, 293, 375, 489, 729, 786, 849, 865, 875
DpnII	GATC	9 cut(s)	125, 291, 373, 487, 727, 784, 847, 863, 873
DraI	TTTAAA	1 cut(s)	517
DraIII	CACNNNGTG	1 cut(s)	548
EaeI	YGGCCR	3 cut(s)	121, 754, 799
Eam1104I	CTCTTC	2 cut(s)	237, 649
EarI	CTCTTC	2 cut(s)	237, 649
EciI	GGCGGA	1 cut(s)	722
Eco130I	CCWWGG	3 cut(s)	32, 501, 601
Eco24I	GRGCYC	2 cut(s)	610, 645
Eco47I	GGWCC	2 cut(s)	4, 980
Eco57I	CTGAAG	1 cut(s)	744
Eco81I	CCTNAGG	1 cut(s)	708
Eco88I	CYCGRG	1 cut(s)	669
EcoO109I	RGGNCCY	1 cut(s)	641
EcoRII	CCWGG	3 cut(s)	272, 637, 779
EcoT14I	CCWWGG	3 cut(s)	32, 501, 601
EcoT22I	ATGCAT	1 cut(s)	393
EcoT38I	GRGCYC	2 cut(s)	610, 645
ErhI	CCWWGG	3 cut(s)	32, 501, 601
FaeI	CATG	4 cut(s)	36, 367, 461, 872
FatI	CATG	4 cut(s)	32, 363, 457, 868
FauNDI	CATATG	1 cut(s)	964
Fnu4HI	GCNGC	3 cut(s)	582, 597, 704
FokI	GGATG	3 cut(s)	179, 621, 1015
FriOI	GRGCYC	2 cut(s)	610, 645
Fsp4HI	GCNGC	3 cut(s)	582, 597, 704
FspBI	CTAG	2 cut(s)	588, 1090
GlaI	GCGC	1 cut(s)	989
GluI	GCNGC	3 cut(s)	582, 597, 704
HaeIII	GGCC	4 cut(s)	123, 643, 756, 801
HhaI	GCGC	1 cut(s)	990
Hin1II	CATG	4 cut(s)	36, 367, 461, 872
Hin6I	GCGC	1 cut(s)	988
HinP1I	GCGC	1 cut(s)	988
HincII	GTYRAC	1 cut(s)	117
HindII	GTYRAC	1 cut(s)	117
HindIII	AAGCTT	1 cut(s)	11
HinfI	GANTC	2 cut(s)	428, 662
Hpy166II	GTNNAC	2 cut(s)	117, 881
Hpy188III	TCNNGA	7 cut(s)	458, 710, 858, 869, 914, 1016, 1062
Hpy8I	GTNNAC	2 cut(s)	117, 881
HpyAV	CCTTC	3 cut(s)	100, 364, 693
HpyCH4III	ACNGT	1 cut(s)	839
HpyCH4IV	ACGT	1 cut(s)	149
HpyCH4V	TGCA	9 cut(s)	155, 260, 287, 391, 425, 560, 581, 596, 893
HpyF10VI	GCNNNNNNNGC	5 cut(s)	167, 566, 605, 753, 996
HpyF3I	CTNAG	2 cut(s)	162, 708
HpySE526I	ACGT	1 cut(s)	149
Hsp92II	CATG	4 cut(s)	36, 367, 461, 872
HspAI	GCGC	1 cut(s)	988
Kzo9I	GATC	9 cut(s)	125, 291, 373, 487, 727, 784, 847, 863, 873
LmnI	GCTCC	2 cut(s)	109, 613
Lsp1109I	GCAGC	3 cut(s)	593, 608, 690
LweI	GCATC	3 cut(s)	157, 164, 400
MaeI	CTAG	2 cut(s)	588, 1090
MaeII	ACGT	1 cut(s)	149
MaeIII	GTNAC	4 cut(s)	145, 268, 304, 820
MalI	GATC	9 cut(s)	127, 293, 375, 489, 729, 786, 849, 865, 875
MbiI	CCGCTC	1 cut(s)	112
MboI	GATC	9 cut(s)	125, 291, 373, 487, 727, 784, 847, 863, 873
MboII	GAAGA	5 cut(s)	254, 666, 737, 845, 873
MflI	RGATCY	5 cut(s)	291, 727, 784, 863, 873
MhlI	GDGCHC	4 cut(s)	195, 256, 610, 645
MlsI	TGGCCA	1 cut(s)	801
MluCI	AATT	4 cut(s)	83, 399, 439, 461
MluNI	TGGCCA	1 cut(s)	801
MlyI	GAGTC	1 cut(s)	422
MmeI	TCCRAC	2 cut(s)	635, 676
Mox20I	TGGCCA	1 cut(s)	801
Mph1103I	ATGCAT	1 cut(s)	393
MscI	TGGCCA	1 cut(s)	801
MseI	TTAA	3 cut(s)	222, 443, 516
Msp20I	TGGCCA	1 cut(s)	801
MspA1I	CMGCKG	1 cut(s)	161
MspR9I	CCNGG	3 cut(s)	274, 639, 781
Mva1269I	GAATGC	3 cut(s)	27, 216, 537
MvaI	CCWGG	3 cut(s)	274, 639, 781
MwoI	GCNNNNNNNGC	5 cut(s)	167, 566, 605, 753, 996
NcoI	CCATGG	1 cut(s)	32
NdeI	CATATG	1 cut(s)	964
NdeII	GATC	9 cut(s)	125, 291, 373, 487, 727, 784, 847, 863, 873
NlaIII	CATG	4 cut(s)	36, 367, 461, 872
NlaIV	GGNNCC	5 cut(s)	293, 472, 609, 643, 786
NmuCI	GTSAC	1 cut(s)	304
NsiI	ATGCAT	1 cut(s)	393
NspI	RCATGY	1 cut(s)	367
PaeR7I	CTCGAG	1 cut(s)	669
PagI	TCATGA	2 cut(s)	457, 868
PaqCI	CACCTGC	1 cut(s)	265
PasI	CCCWGGG	1 cut(s)	780
PcsI	WCGNNNNNNNCGW	1 cut(s)	856
PctI	GAATGC	3 cut(s)	27, 216, 537
PfeI	GAWTC	1 cut(s)	662
PflMI	CCANNNNNTGG	2 cut(s)	548, 968
PkrI	GCNGC	3 cut(s)	583, 598, 705
PleI	GAGTC	1 cut(s)	422
PpsI	GAGTC	1 cut(s)	422
Psp1406I	AACGTT	1 cut(s)	149
Psp6I	CCWGG	3 cut(s)	272, 637, 779
PspGI	CCWGG	3 cut(s)	272, 637, 779
PspN4I	GGNNCC	5 cut(s)	293, 472, 609, 643, 786
PspOMI	GGGCCC	1 cut(s)	641
PspPI	GGNCC	4 cut(s)	4, 641, 642, 980
PspXI	VCTCGAGB	1 cut(s)	669
PstI	CTGCAG	1 cut(s)	583
PsuI	RGATCY	5 cut(s)	291, 727, 784, 863, 873
PvuII	CAGCTG	1 cut(s)	161
RsaI	GTAC	2 cut(s)	928, 1079
RsaNI	GTAC	2 cut(s)	927, 1078
SaqAI	TTAA	3 cut(s)	222, 443, 516
SatI	GCNGC	3 cut(s)	582, 597, 704
Sau3AI	GATC	9 cut(s)	125, 291, 373, 487, 727, 784, 847, 863, 873
Sau96I	GGNCC	4 cut(s)	4, 641, 642, 980
SchI	GAGTC	1 cut(s)	422
ScrFI	CCNGG	3 cut(s)	274, 639, 781
SduI	GDGCHC	4 cut(s)	195, 256, 610, 645
SfaNI	GCATC	3 cut(s)	157, 164, 400
SfcI	CTRYAG	1 cut(s)	579
Sfr274I	CTCGAG	1 cut(s)	669
SinI	GGWCC	2 cut(s)	4, 980
SlaI	CTCGAG	1 cut(s)	669
SmlI	CTYRAG	1 cut(s)	669
SmoI	CTYRAG	1 cut(s)	669
Sse9I	AATT	4 cut(s)	83, 399, 439, 461
SsiI	CCGC	4 cut(s)	7, 112, 733, 1047
SspMI	CTAG	2 cut(s)	588, 1090
StyD4I	CCNGG	3 cut(s)	272, 637, 779
StyI	CCWWGG	3 cut(s)	32, 501, 601
TaaI	ACNGT	1 cut(s)	839
TaiI	ACGT	1 cut(s)	152
TaqI	TCGA	4 cut(s)	322, 394, 490, 670
TasI	AATT	4 cut(s)	83, 399, 439, 461
TfiI	GAWTC	1 cut(s)	662
Tru1I	TTAA	3 cut(s)	222, 443, 516
Tru9I	TTAA	3 cut(s)	222, 443, 516
TscAI	CASTG	1 cut(s)	528
TseFI	GTSAC	1 cut(s)	304
TseI	GCWGC	3 cut(s)	581, 596, 703
Tsp45I	GTSAC	1 cut(s)	304
TspDTI	ATGAA	4 cut(s)	119, 474, 933, 962
TspGWI	ACGGA	1 cut(s)	421
TspRI	CASTG	1 cut(s)	528
Van91I	CCANNNNNTGG	2 cut(s)	548, 968
VpaK11BI	GGWCC	2 cut(s)	4, 980
XapI	RAATTY	1 cut(s)	439
XceI	RCATGY	1 cut(s)	367
XcmI	CCANNNNNNNNNTGG	1 cut(s)	809
XhoI	CTCGAG	1 cut(s)	669
XspI	CTAG	2 cut(s)	588, 1090
Zsp2I	ATGCAT	1 cut(s)	393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.