FvH4_1g19890

CAAD domains of cyanobacterial aminoacyl-tRNA synthetase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0014374
Physical Location & Seq
Reverse (-)
12045716 .. 12048423
2708 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g19890.t1

Sequence Viewer

Length: 591 bp
ATGATGGAGCTCTGTACCACCACGTTTCAACCTCTCCCCAATCTCCTCATCCCAAACCCTAAAACCCACCTCCGCTCAAAACCATCCCTCCTATTCGCCCACTCTCTCAGGCTTCGCTCTCGATTGCTTTCGATTCGAGCTACATCTTCCGAAGAAAGTGGGGCAAAAGCTTATTCTGGTGAAGAGCCAGATGGGGTGGTATCTACTTATGATGTTCCGCAGCCGGAAAAGAAGCCTTACGGTCAAGCTGTGGTAGAGGAAGCACCACCAGAGGACCTGATTGTGAATGGCAGTGAAGGTCAGTCACAGATATCTGAGTTGTTGGAGAACTTTAACTTAAAGTTGGACAATGATGATTCATATGTCTTTCTACTATACGGTGGTGGTGCCTTGGTTACCCTGTGGTTAGCATCAGCAATCATAGGTGCTATTGATTCTATTCCATTGTTCCCCAAGTTGCTGGAAGTTGTGGGTCTTGGATACACAATATGGTTTAGCAGTCGGTATCTGATATTCAAGAAAAACAGAGAGGAGTTGGTTGCTAAAGTCCAAGTTCTAAAGCAGCAGGTTCTTGGTTCAAATGATGACTGA

Protein Analysis

197

Amino Acids

21.67

Weight (kDa)

5.03

Isoelectric Point (pI)

45.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAAD PF14159 117 - 192 2.3e-26 CAAD domains of cyanobacterial aminoacyl-tRNA synthetase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014374)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38100 AT4G38100
fragaria_vesca FvH4_1g19890
malus_domestica MD15G1315100.v1.1
prunus_persica Prupe.6G196600_v2.0.a1
pyrus_communis pycom15g27840
rosa_chinensis RchiOBHm_Chr2g0111711
rosa_laevigata RLG00000017919
rosa_multiflora Rmu_sc0000448.1_g000011
rosa_roxburghii Rroxscaffold_2G00132150
rosa_rugosa Rorug02G0175600 Rorug02G0175700
rosa_samantha Rh2AG228600 Rh2BG240900 Rh2CG232000 Rh2DG236600
rosa_wichuraiana Rw2G017660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 556
AccB1I GGYRCC 1 cut(s) 386
AccBSI CCGCTC 1 cut(s) 75
AciI CCGC 2 cut(s) 73, 218
AfaI GTAC 1 cut(s) 16
AgsI TTSAA 3 cut(s) 29, 517, 579
AluBI AGCT 4 cut(s) 10, 140, 170, 248
AluI AGCT 4 cut(s) 10, 140, 170, 248
Alw21I GWGCWC 1 cut(s) 12
ApeKI GCWGC 2 cut(s) 220, 562
AspS9I GGNCC 1 cut(s) 274
AsuHPI GGTGA 1 cut(s) 191
AvaII GGWCC 1 cut(s) 274
BanI GGYRCC 1 cut(s) 386
BanII GRGCYC 1 cut(s) 12
Bbv12I GWGCWC 1 cut(s) 12
BbvI GCAGC 2 cut(s) 232, 574
BccI CCATC 2 cut(s) 91, 185
BciVI GTATCC 1 cut(s) 473
BfuAI ACCTGC 1 cut(s) 556
BfuI GTATCC 1 cut(s) 473
BisI GCNGC 2 cut(s) 221, 563
BlsI GCNGC 2 cut(s) 222, 564
Bme18I GGWCC 1 cut(s) 274
BmgT120I GGNCC 1 cut(s) 274
BmiI GGNNCC 1 cut(s) 388
BmsI GCATC 1 cut(s) 419
BsaJI CCNNGG 1 cut(s) 390
BsaXI ACNNNNNCTCC 2 cut(s) 72, 102
BseDI CCNNGG 1 cut(s) 390
BseGI GGATG 2 cut(s) 48, 83
BseMII CTCAG 2 cut(s) 121, 306
BseRI GAGGAG 2 cut(s) 35, 545
BseXI GCAGC 2 cut(s) 232, 574
BshNI GGYRCC 1 cut(s) 386
BsiHKAI GWGCWC 1 cut(s) 12
BsiSI CCGG 1 cut(s) 224
Bsp1286I GDGCHC 1 cut(s) 12
BspACI CCGC 2 cut(s) 73, 218
BspCNI CTCAG 2 cut(s) 120, 307
BspLI GGNNCC 1 cut(s) 388
BspMI ACCTGC 1 cut(s) 556
BspQI GCTCTTC 1 cut(s) 177
BspT107I GGYRCC 1 cut(s) 386
BsrBI CCGCTC 1 cut(s) 75
BssECI CCNNGG 1 cut(s) 390
BssT1I CCWWGG 1 cut(s) 390
Bst4CI ACNGT 2 cut(s) 242, 380
Bst6I CTCTTC 1 cut(s) 177
BstDEI CTNAG 2 cut(s) 107, 315
BstEII GGTNACC 1 cut(s) 394
BstF5I GGATG 2 cut(s) 48, 83
BstPI GGTNACC 1 cut(s) 394
BstV1I GCAGC 2 cut(s) 232, 574
BstXI CCANNNNNNTGG 1 cut(s) 460
BsuI GTATCC 1 cut(s) 473
BtsCI GGATG 2 cut(s) 48, 83
BtsI GCAGTG 1 cut(s) 298
BtsIMutI CAGTG 1 cut(s) 298
BveI ACCTGC 1 cut(s) 556
Cfr13I GGNCC 1 cut(s) 274
Csp6I GTAC 1 cut(s) 15
CviJI RGCY 8 cut(s) 10, 112, 140, 170, 187, 223, 235, 248
CviKI_1 RGCY 8 cut(s) 10, 112, 140, 170, 187, 223, 235, 248
CviQI GTAC 1 cut(s) 15
DdeI CTNAG 2 cut(s) 107, 315
Eam1104I CTCTTC 1 cut(s) 177
EarI CTCTTC 1 cut(s) 177
Ecl136II GAGCTC 1 cut(s) 10
Eco130I CCWWGG 1 cut(s) 390
Eco24I GRGCYC 1 cut(s) 12
Eco32I GATATC 1 cut(s) 312
Eco47I GGWCC 1 cut(s) 274
Eco53kI GAGCTC 1 cut(s) 10
Eco91I GGTNACC 1 cut(s) 394
EcoICRI GAGCTC 1 cut(s) 10
EcoO109I RGGNCCY 1 cut(s) 274
EcoO65I GGTNACC 1 cut(s) 394
EcoRV GATATC 1 cut(s) 312
EcoT14I CCWWGG 1 cut(s) 390
EcoT38I GRGCYC 1 cut(s) 12
ErhI CCWWGG 1 cut(s) 390
FaiI YATR 6 cut(s) 210, 361, 363, 376, 422, 490
FauNDI CATATG 1 cut(s) 361
Fnu4HI GCNGC 2 cut(s) 221, 563
FokI GGATG 2 cut(s) 35, 70
FriOI GRGCYC 1 cut(s) 12
Fsp4HI GCNGC 2 cut(s) 221, 563
GluI GCNGC 2 cut(s) 221, 563
HapII CCGG 1 cut(s) 224
HindIII AAGCTT 1 cut(s) 168
HinfI GANTC 3 cut(s) 133, 356, 434
HpaII CCGG 1 cut(s) 224
HphI GGTGA 1 cut(s) 191
Hpy188I TCNGA 3 cut(s) 151, 316, 510
Hpy188III TCNNGA 2 cut(s) 120, 517
HpyAV CCTTC 1 cut(s) 290
HpyCH4III ACNGT 2 cut(s) 242, 380
HpyCH4IV ACGT 1 cut(s) 23
HpyF3I CTNAG 2 cut(s) 107, 315
HpySE526I ACGT 1 cut(s) 23
LguI GCTCTTC 1 cut(s) 177
LmnI GCTCC 1 cut(s) 7
LpnPI CCDG 9 cut(s) 94, 162, 201, 237, 282, 290, 413, 446, 551
Lsp1109I GCAGC 2 cut(s) 232, 574
LweI GCATC 1 cut(s) 419
MaeII ACGT 1 cut(s) 23
MaeIII GTNAC 2 cut(s) 303, 394
MbiI CCGCTC 1 cut(s) 75
MboII GAAGA 3 cut(s) 138, 164, 194
MhlI GDGCHC 1 cut(s) 12
MmeI TCCRAC 2 cut(s) 303, 324
MnlI CCTC 7 cut(s) 42, 56, 80, 98, 250, 265, 523
MseI TTAA 2 cut(s) 333, 338
MspI CCGG 1 cut(s) 224
NdeI CATATG 1 cut(s) 361
NlaIV GGNNCC 1 cut(s) 388
NmuCI GTSAC 1 cut(s) 303
PciSI GCTCTTC 1 cut(s) 177
PfeI GAWTC 3 cut(s) 133, 356, 434
PkrI GCNGC 2 cut(s) 222, 564
PpuMI RGGWCCY 1 cut(s) 274
Psp124BI GAGCTC 1 cut(s) 12
Psp5II RGGWCCY 1 cut(s) 274
PspEI GGTNACC 1 cut(s) 394
PspN4I GGNNCC 1 cut(s) 388
PspPI GGNCC 1 cut(s) 274
PspPPI RGGWCCY 1 cut(s) 274
RsaI GTAC 1 cut(s) 16
RsaNI GTAC 1 cut(s) 15
SacI GAGCTC 1 cut(s) 12
SapI GCTCTTC 1 cut(s) 177
SaqAI TTAA 2 cut(s) 333, 338
SatI GCNGC 2 cut(s) 221, 563
Sau96I GGNCC 1 cut(s) 274
SduI GDGCHC 1 cut(s) 12
SfaNI GCATC 1 cut(s) 419
SinI GGWCC 1 cut(s) 274
SsiI CCGC 2 cut(s) 73, 218
SstI GAGCTC 1 cut(s) 12
StyI CCWWGG 1 cut(s) 390
TaaI ACNGT 2 cut(s) 242, 380
TaiI ACGT 1 cut(s) 26
TaqI TCGA 3 cut(s) 121, 131, 136
TfiI GAWTC 3 cut(s) 133, 356, 434
Tru1I TTAA 2 cut(s) 333, 338
Tru9I TTAA 2 cut(s) 333, 338
TscAI CASTG 1 cut(s) 298
TseFI GTSAC 1 cut(s) 303
TseI GCWGC 2 cut(s) 220, 562
Tsp45I GTSAC 1 cut(s) 303
TspDTI ATGAA 1 cut(s) 348
TspRI CASTG 1 cut(s) 298
VpaK11BI GGWCC 1 cut(s) 274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.