Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0014374

Physical Location & Seq

Genomic Coordinates Forward (+)

16147525 .. 16149420

Gene Structure 1896 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0175600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGAAGAAAGGCTCTGGAGCTTCCCTGGATTTGGGGACACTTCCAGGTCAAAAGGGTTGGAACTCAGAACGAGTGAGGACACTGAGTAATAACAATGGTGGAGGTGGAGGGAGGACTTTGGGTTCGAAATGGGAAGATGCAGAAAGGTGGATTTGCAGCCCAAGAAGCAAGGATATGGATTCTCATGGCCAGAAGAGGAGGCCCAAGTCCAAGAGTGGTCCGATTGTGCCGCCGGGAGCTTTGTACTACTCGAATAATTCACCTACAAATCCAGGTTTTGAAGGTGGAAGTTTAGGGAACTTTGTTACTGGTTCCCCATTCTCAACTGGAGTTTTGGCAGCTGATAGCGTCTGTCTTAACTATGGAGGAATGGGAAGATCAACAAGCCTGCTTGGAATGCCAGAATTCCTGAATGAGAAGTTTGATGATAACAGTAGTGAGGAGCCAATGGTTGCTCGTGCTGTTTCACAAAGAGATATGGGAACCCAAATAAGCCAAAATGCAGAGGGTTGTCTACACTCATCATCACCAAGGAGAAGGTCATCATTTGCTCCATCTTCTCCCACTCTGGTTTCTATTGTGGAGCAGCAACGTGAACATTTTGCAAGATTAGAGGTCAGAGAAGTGCAGGTAGACAATCGAGTCACCGTTGTTAATGGGTCTAGAGGAGGTGGCGCCGAAAGCACCAAGAAAAGTCCACCGGATGTCAATGACTTCGGCAACATTGCTTTTCAGGACCAAACTCCATCTTTTAACATTGCAGAAGCAGCAATGAATATATCAAGGTTGCAAAGAGAGGAAGCCAAGATCAGTGCATGGGAGAACTTGCAGAAAGCAAAAGCTGAAGCGGCACTACGAAAACTAGAGATGAAATTGGAAAAGAAGAAATCGTCAACAATGGATAAGATTATGAAGAAGCTGAGCAAAGCACAAGTTAAAGCCAACAAGATGAGAAGCTCAATGGCAGTAGGAGACAGCCATCAACTTGCCGAAACTCCAAGCAAGGCTCGTTCGTTTAGTAAGCGTGTCCGAATAGGTTTGCTGCGGAGGTGCTTTACCTGCAATGCCCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CAAD

Protein Analysis

357

Amino Acids

38.81

Weight (kDa)

9.85

Isoelectric Point (pI)

57.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Remorin_C	PF03763	253 - 342	1.6e-21	Remorin, C-terminal region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014374)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38100 AT4G38100
fragaria_vesca	FvH4_1g19890
malus_domestica	MD15G1315100.v1.1
prunus_persica	Prupe.6G196600_v2.0.a1
pyrus_communis	pycom15g27840
rosa_chinensis	RchiOBHm_Chr2g0111711
rosa_laevigata	RLG00000017919
rosa_multiflora	Rmu_sc0000448.1_g000011
rosa_roxburghii	Rroxscaffold_2G00132150
rosa_rugosa	Rorug02G0175600 Rorug02G0175700
rosa_samantha	Rh2AG228600 Rh2BG240900 Rh2CG232000 Rh2DG236600
rosa_wichuraiana	Rw2G017660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	641
Acc36I	ACCTGC	2 cut(s)	619, 1067
AccB1I	GGYRCC	1 cut(s)	674
AccI	GTMKAC	2 cut(s)	514, 633
AciI	CCGC	3 cut(s)	230, 848, 1045
AcoI	YGGCCR	1 cut(s)	187
AcsI	RAATTY	1 cut(s)	404
AcuI	CTGAAG	1 cut(s)	864
AcyI	GRCGYC	1 cut(s)	675
AfaI	GTAC	1 cut(s)	245
AfiI	CCNNNNNNNGG	1 cut(s)	31
AgsI	TTSAA	1 cut(s)	281
AjnI	CCWGG	3 cut(s)	24, 43, 271
AloI	GAACNNNNNNTCC	2 cut(s)	106, 138
AluBI	AGCT	6 cut(s)	20, 239, 341, 842, 919, 957
AluI	AGCT	6 cut(s)	20, 239, 341, 842, 919, 957
Alw26I	GTCTC	1 cut(s)	966
AoxI	GGCC	2 cut(s)	187, 200
ApeKI	GCWGC	5 cut(s)	156, 338, 586, 767, 1042
ApoI	RAATTY	1 cut(s)	404
ArsI	GACNNNNNNTTYG	2 cut(s)	106, 138
AspLEI	GCGC	1 cut(s)	677
AspS9I	GGNCC	3 cut(s)	201, 218, 736
AsuC2I	CCSGG	1 cut(s)	234
AsuHPI	GGTGA	3 cut(s)	252, 519, 637
AsuII	TTCGAA	1 cut(s)	125
AvaII	GGWCC	2 cut(s)	218, 736
BalI	TGGCCA	1 cut(s)	189
BanI	GGYRCC	1 cut(s)	674
BarI	GAAGNNNNNNTAC	2 cut(s)	837, 869
BauI	CACGAG	1 cut(s)	456
BbvI	GCAGC	5 cut(s)	168, 350, 598, 779, 1029
BccI	CCATC	3 cut(s)	562, 754, 987
BciT130I	CCWGG	3 cut(s)	26, 45, 273
BcnI	CCSGG	1 cut(s)	234
BcoDI	GTCTC	1 cut(s)	966
BfaI	CTAG	2 cut(s)	663, 863
BfoI	RGCGCY	1 cut(s)	678
BfuAI	ACCTGC	2 cut(s)	619, 1067
BisI	GCNGC	7 cut(s)	157, 230, 339, 587, 768, 849, 1043
BlpI	GCTNAGC	1 cut(s)	920
BlsI	GCNGC	7 cut(s)	158, 231, 340, 588, 769, 850, 1044
Bme1390I	CCNGG	4 cut(s)	26, 45, 234, 273
Bme18I	GGWCC	2 cut(s)	218, 736
BmgT120I	GGNCC	3 cut(s)	201, 218, 736
BmiI	GGNNCC	4 cut(s)	313, 444, 484, 676
BmrFI	CCNGG	4 cut(s)	26, 45, 234, 273
BmsI	GCATC	1 cut(s)	127
BpmI	CTGGAG	2 cut(s)	36, 348
Bpu1102I	GCTNAGC	1 cut(s)	920
Bpu14I	TTCGAA	1 cut(s)	125
BpuMI	CCSGG	1 cut(s)	234
BsaHI	GRCGYC	1 cut(s)	675
BsaJI	CCNNGG	2 cut(s)	24, 530
BsaWI	WCCGGW	1 cut(s)	700
Bsc4I	CCNNNNNNNGG	1 cut(s)	31
Bse1I	ACTGG	2 cut(s)	313, 331
Bse3DI	GCAATG	4 cut(s)	723, 756, 777, 1069
BseBI	CCWGG	3 cut(s)	26, 45, 273
BseDI	CCNNGG	2 cut(s)	24, 530
BseGI	GGATG	1 cut(s)	709
BseLI	CCNNNNNNNGG	1 cut(s)	31
BseMI	GCAATG	4 cut(s)	723, 756, 777, 1069
BseMII	CTCAG	3 cut(s)	74, 78, 911
BseNI	ACTGG	2 cut(s)	313, 331
BseRI	GAGGAG	3 cut(s)	211, 455, 681
BseXI	GCAGC	5 cut(s)	168, 350, 598, 779, 1029
BsgI	GTGCAG	1 cut(s)	647
BshFI	GGCC	2 cut(s)	189, 202
BshNI	GGYRCC	1 cut(s)	674
BsiSI	CCGG	2 cut(s)	233, 701
BslFI	GGGAC	1 cut(s)	49
BslI	CCNNNNNNNGG	1 cut(s)	31
BsmAI	GTCTC	1 cut(s)	966
BsmFI	GGGAC	1 cut(s)	49
BsmI	GAATGC	1 cut(s)	402
BsnI	GGCC	2 cut(s)	189, 202
Bsp119I	TTCGAA	1 cut(s)	125
Bsp143I	GATC	2 cut(s)	377, 807
Bsp1720I	GCTNAGC	1 cut(s)	920
BspACI	CCGC	3 cut(s)	230, 848, 1045
BspANI	GGCC	2 cut(s)	189, 202
BspCNI	CTCAG	3 cut(s)	75, 77, 912
BspLI	GGNNCC	4 cut(s)	313, 444, 484, 676
BspMI	ACCTGC	2 cut(s)	619, 1067
BspT104I	TTCGAA	1 cut(s)	125
BspT107I	GGYRCC	1 cut(s)	674
BsrDI	GCAATG	4 cut(s)	723, 756, 777, 1069
BsrI	ACTGG	2 cut(s)	313, 331
BssECI	CCNNGG	2 cut(s)	24, 530
BssMI	GATC	2 cut(s)	377, 807
BssNI	GRCGYC	1 cut(s)	675
BssSI	CACGAG	1 cut(s)	456
BssT1I	CCWWGG	1 cut(s)	530
Bst2BI	CACGAG	1 cut(s)	456
Bst2UI	CCWGG	3 cut(s)	26, 45, 273
Bst4CI	ACNGT	2 cut(s)	434, 649
Bst6I	CTCTTC	1 cut(s)	188
BstACI	GRCGYC	1 cut(s)	675
BstBI	TTCGAA	1 cut(s)	125
BstC8I	GCNNGC	1 cut(s)	389
BstDEI	CTNAG	3 cut(s)	64, 83, 920
BstF5I	GGATG	1 cut(s)	709
BstH2I	RGCGCY	1 cut(s)	678
BstHHI	GCGC	1 cut(s)	677
BstKTI	GATC	2 cut(s)	380, 810
BstMAI	GTCTC	1 cut(s)	966
BstMBI	GATC	2 cut(s)	377, 807
BstMWI	GCNNNNNNNGC	6 cut(s)	165, 397, 681, 767, 848, 1059
BstNI	CCWGG	3 cut(s)	26, 45, 273
BstSCI	CCNGG	4 cut(s)	24, 43, 232, 271
BstV1I	GCAGC	5 cut(s)	168, 350, 598, 779, 1029
BsuRI	GGCC	2 cut(s)	189, 202
BtsCI	GGATG	1 cut(s)	709
BtsIMutI	CAGTG	2 cut(s)	80, 817
BveI	ACCTGC	2 cut(s)	619, 1067
Cac8I	GCNNGC	1 cut(s)	389
CfoI	GCGC	1 cut(s)	677
Cfr13I	GGNCC	3 cut(s)	201, 218, 736
CseI	GACGC	1 cut(s)	337
Csp6I	GTAC	1 cut(s)	244
CviAII	CATG	2 cut(s)	185, 816
CviQI	GTAC	1 cut(s)	244
DdeI	CTNAG	3 cut(s)	64, 83, 920
DinI	GGCGCC	1 cut(s)	676
DpnI	GATC	2 cut(s)	379, 809
DpnII	GATC	2 cut(s)	377, 807
DrdI	GACNNNNNNGTC	1 cut(s)	641
DseDI	GACNNNNNNGTC	1 cut(s)	641
EaeI	YGGCCR	1 cut(s)	187
Eam1104I	CTCTTC	1 cut(s)	188
EarI	CTCTTC	1 cut(s)	188
Eco130I	CCWWGG	1 cut(s)	530
Eco47I	GGWCC	2 cut(s)	218, 736
Eco57I	CTGAAG	1 cut(s)	864
EcoRI	GAATTC	1 cut(s)	404
EcoRII	CCWGG	3 cut(s)	24, 43, 271
EcoT14I	CCWWGG	1 cut(s)	530
EgeI	GGCGCC	1 cut(s)	676
EheI	GGCGCC	1 cut(s)	676
ErhI	CCWWGG	1 cut(s)	530
FaeI	CATG	2 cut(s)	188, 819
FaiI	YATR	7 cut(s)	176, 186, 363, 479, 779, 817, 911
FaqI	GGGAC	1 cut(s)	49
FatI	CATG	2 cut(s)	184, 815
FblI	GTMKAC	2 cut(s)	514, 633
Fnu4HI	GCNGC	7 cut(s)	157, 230, 339, 587, 768, 849, 1043
FokI	GGATG	1 cut(s)	716
Fsp4HI	GCNGC	7 cut(s)	157, 230, 339, 587, 768, 849, 1043
FspBI	CTAG	2 cut(s)	663, 863
GlaI	GCGC	1 cut(s)	676
GluI	GCNGC	7 cut(s)	157, 230, 339, 587, 768, 849, 1043
GsuI	CTGGAG	2 cut(s)	36, 348
HaeII	RGCGCY	1 cut(s)	678
HaeIII	GGCC	2 cut(s)	189, 202
HapII	CCGG	2 cut(s)	233, 701
HgaI	GACGC	1 cut(s)	337
HhaI	GCGC	1 cut(s)	677
Hin1I	GRCGYC	1 cut(s)	675
Hin1II	CATG	2 cut(s)	188, 819
Hin6I	GCGC	1 cut(s)	675
HinP1I	GCGC	1 cut(s)	675
HincII	GTYRAC	1 cut(s)	894
HindII	GTYRAC	1 cut(s)	894
HinfI	GANTC	2 cut(s)	179, 642
HpaII	CCGG	2 cut(s)	233, 701
HphI	GGTGA	3 cut(s)	252, 519, 637
Hpy166II	GTNNAC	5 cut(s)	515, 596, 634, 698, 894
Hpy188I	TCNGA	4 cut(s)	67, 222, 620, 1031
Hpy188III	TCNNGA	4 cut(s)	15, 409, 663, 734
Hpy8I	GTNNAC	5 cut(s)	515, 596, 634, 698, 894
HpyAV	CCTTC	2 cut(s)	275, 531
HpyCH4III	ACNGT	2 cut(s)	434, 649
HpyCH4IV	ACGT	1 cut(s)	592
HpyF10VI	GCNNNNNNNGC	6 cut(s)	165, 397, 681, 767, 848, 1059
HpyF3I	CTNAG	3 cut(s)	64, 83, 920
HpySE526I	ACGT	1 cut(s)	592
Hsp92I	GRCGYC	1 cut(s)	675
Hsp92II	CATG	2 cut(s)	188, 819
HspAI	GCGC	1 cut(s)	675
KasI	GGCGCC	1 cut(s)	674
Kzo9I	GATC	2 cut(s)	377, 807
LmnI	GCTCC	5 cut(s)	17, 236, 442, 556, 583
Lsp1109I	GCAGC	5 cut(s)	168, 350, 598, 779, 1029
LweI	GCATC	1 cut(s)	127
MaeI	CTAG	2 cut(s)	663, 863
MaeII	ACGT	1 cut(s)	592
MaeIII	GTNAC	2 cut(s)	304, 643
MalI	GATC	2 cut(s)	379, 809
MboI	GATC	2 cut(s)	377, 807
MboII	GAAGA	7 cut(s)	16, 146, 205, 387, 549, 895, 925
MlsI	TGGCCA	1 cut(s)	189
MluCI	AATT	3 cut(s)	256, 404, 872
MluNI	TGGCCA	1 cut(s)	189
Mly113I	GGCGCC	1 cut(s)	675
MlyI	GAGTC	1 cut(s)	651
MmeI	TCCRAC	1 cut(s)	38
Mox20I	TGGCCA	1 cut(s)	189
MscI	TGGCCA	1 cut(s)	189
MseI	TTAA	5 cut(s)	357, 654, 753, 936, 1072
Msp20I	TGGCCA	1 cut(s)	189
MspA1I	CMGCKG	1 cut(s)	341
MspI	CCGG	2 cut(s)	233, 701
MspR9I	CCNGG	4 cut(s)	26, 45, 234, 273
Mva1269I	GAATGC	1 cut(s)	402
MvaI	CCWGG	3 cut(s)	26, 45, 273
MwoI	GCNNNNNNNGC	6 cut(s)	165, 397, 681, 767, 848, 1059
NarI	GGCGCC	1 cut(s)	675
NciI	CCSGG	1 cut(s)	234
NdeII	GATC	2 cut(s)	377, 807
NlaIII	CATG	2 cut(s)	188, 819
NlaIV	GGNNCC	4 cut(s)	313, 444, 484, 676
NmuCI	GTSAC	1 cut(s)	643
NspV	TTCGAA	1 cut(s)	125
PctI	GAATGC	1 cut(s)	402
PfeI	GAWTC	1 cut(s)	179
PkrI	GCNGC	7 cut(s)	158, 231, 340, 588, 769, 850, 1044
PleI	GAGTC	1 cut(s)	650
PluTI	GGCGCC	1 cut(s)	678
PpsI	GAGTC	1 cut(s)	650
Psp6I	CCWGG	3 cut(s)	24, 43, 271
PspGI	CCWGG	3 cut(s)	24, 43, 271
PspN4I	GGNNCC	4 cut(s)	313, 444, 484, 676
PspPI	GGNCC	3 cut(s)	201, 218, 736
PvuII	CAGCTG	1 cut(s)	341
RsaI	GTAC	1 cut(s)	245
RsaNI	GTAC	1 cut(s)	244
SaqAI	TTAA	5 cut(s)	357, 654, 753, 936, 1072
SatI	GCNGC	7 cut(s)	157, 230, 339, 587, 768, 849, 1043
Sau3AI	GATC	2 cut(s)	377, 807
Sau96I	GGNCC	3 cut(s)	201, 218, 736
SchI	GAGTC	1 cut(s)	651
ScrFI	CCNGG	4 cut(s)	26, 45, 234, 273
SfaNI	GCATC	1 cut(s)	127
SfoI	GGCGCC	1 cut(s)	676
SfuI	TTCGAA	1 cut(s)	125
SinI	GGWCC	2 cut(s)	218, 736
Sse9I	AATT	3 cut(s)	256, 404, 872
SsiI	CCGC	3 cut(s)	230, 848, 1045
SspDI	GGCGCC	1 cut(s)	674
SspMI	CTAG	2 cut(s)	663, 863
StyD4I	CCNGG	4 cut(s)	24, 43, 232, 271
StyI	CCWWGG	1 cut(s)	530
TaaI	ACNGT	2 cut(s)	434, 649
TaiI	ACGT	1 cut(s)	595
TaqI	TCGA	3 cut(s)	125, 251, 640
TasI	AATT	3 cut(s)	256, 404, 872
TatI	WGTACW	1 cut(s)	243
TauI	GCSGC	2 cut(s)	232, 851
TfiI	GAWTC	1 cut(s)	179
Tru1I	TTAA	5 cut(s)	357, 654, 753, 936, 1072
Tru9I	TTAA	5 cut(s)	357, 654, 753, 936, 1072
TscAI	CASTG	2 cut(s)	87, 817
TseFI	GTSAC	1 cut(s)	643
TseI	GCWGC	5 cut(s)	156, 338, 586, 767, 1042
Tsp45I	GTSAC	1 cut(s)	643
TspDTI	ATGAA	4 cut(s)	17, 788, 884, 926
TspRI	CASTG	2 cut(s)	87, 817
VpaK11BI	GGWCC	2 cut(s)	218, 736
XapI	RAATTY	1 cut(s)	404
XbaI	TCTAGA	1 cut(s)	662
XmiI	GTMKAC	2 cut(s)	514, 633
XspI	CTAG	2 cut(s)	663, 863

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.