AT4G38240

Alpha-1,3-mannosyl-glycoprotein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Reverse (-)
17931570 .. 17935325
3756 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G38240.3

Sequence Viewer

Length: 1335 bp
ATGGCGAGGATCTCGTGTGACTTGAGATTTCTTCTCATCCCGGCAGCTTTCATGTTCATCTACATCCAGATGAGGCTTTTCCAGACGCAATCACAGTATGCAGATCGCCTCAGTTCCGCTATCGAATCTGAGAACCATTGCACTAGTCAAATGCGAGGCCTCATAGATGAAGTTAGCATCAAACAGTCGCGGATTGTTGCCCTCGAAGATATGAAGAACCGCCAGGACGAAGAACTTGTGCAGCTTAAGGATCTAATCCAGACGTTTGAAAAAAAAGGAATAGCAAAACTCACTCAAGGTGGACAGATGCCTGTGGCTGCTGTAGTGGTTATGGCCTGCAGTCGTGCAGACTATCTTGAAAGGACTGTTAAATCAGTTTTAACATATCAAACTCCCGTTGCTTCAAAATATCCTCTATTTATATCTCAGGATGGATCTGATCAAGCTGTCAAGAGCAAGTCATTGAGCTATAATCAATTAACATATATGCAGCACTTGGATTTTGAACCAGTGGTCACTGAAAGGCCTGGCGAACTGACTGCGTACTACAAGATTGCACGTCACTACAAGTGGGCACTGGACCAGTTGTTTTACAAACACAAATTTAGTCGAGTGATTATACTAGAAGATGATATGGAAATTGCTCCAGACTTCTTTGATTACTTTGAGGCTGCAGCTAGTCTCATGGATAGGGATAAAACCATTATGGCTGCTTCATCATGGAATGATAATGGACAGAAGCAGTTTGTGCATGATCCCTATGCGCTATACCGATCAGATTTTTTTCCTGGCCTTGGGTGGATGCTCAAGAGATCGACTTGGGATGAGTTATCACCAAAGTGGCCAAAGGCTTACTGGGATGATTGGCTGAGACTAAAGGAAAACCATAAAGGCCGCCAATTCATTCGACCGGAAGTCTGTAGAACATACAATTTTGGTGAACATGGGTCTAGTTTGGGACAGTTTTTCAGTCAGTATCTGGAACCTATAAAGCTAAACGATGTGACGGTTGACTGGAAAGCAAAGGACCTGGGATACCTGACAGAGGGAAACTATACCAAGTACTTTTCTGGCTTAGTGAGACAAGCACGACCAATTCAAGGTTCTGACCTTGTCTTAAAGGCTCAAAACATAAAGGATGATGTTCGTATCCGGTATAAAGACCAAGTAGAGTTTGAACGCATTGCAGGGGAATTTGGTATATTTGAAGAATGGAAGGATGGTGTGCCTCGAACAGCATATAAAGGAGTAGTGGTGTTTCGAATCCAGACAACAAGACGTGTATTCCTGGTTGGGCCAGATTCTGTAATGCAGCTTGGAATTCGAAATTCCTGA

Protein Analysis

444

Amino Acids

51.63

Weight (kDa)

8.11

Isoelectric Point (pI)

38.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GNT-I PF03071 13 - 432 2.2e-205 GNT-I family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 190
AciI CCGC 4 cut(s) 117, 190, 220, 895
AclWI GGATC 4 cut(s) 17, 258, 442, 749
AcoI YGGCCR 1 cut(s) 842
AcsI RAATTY 4 cut(s) 602, 1193, 1320, 1327
AfaI GTAC 2 cut(s) 545, 1064
AfiI CCNNNNNNNGG 3 cut(s) 794, 1045, 1100
AflII CTTAAG 1 cut(s) 245
AflIII ACRYGT 1 cut(s) 1279
AgsI TTSAA 7 cut(s) 269, 359, 405, 506, 1100, 1178, 1208
AhdI GACNNNNNGTC 1 cut(s) 914
AhlI ACTAGT 1 cut(s) 143
AjiI CACGTC 2 cut(s) 560, 1280
AjnI CCWGG 5 cut(s) 222, 526, 787, 1029, 1287
AjuI GAANNNNNNNTTGG 2 cut(s) 1087, 1119
AleI CACNNNNGTG 1 cut(s) 838
AluBI AGCT 7 cut(s) 47, 244, 446, 468, 677, 994, 1315
AluI AGCT 7 cut(s) 47, 244, 446, 468, 677, 994, 1315
Alw26I GTCTC 3 cut(s) 686, 865, 1075
AlwI GGATC 4 cut(s) 17, 258, 442, 749
AlwNI CAGNNNCTG 2 cut(s) 979, 1304
AoxI GGCC 7 cut(s) 157, 333, 524, 790, 842, 892, 1295
ApeKI GCWGC 8 cut(s) 44, 241, 317, 490, 671, 674, 710, 1312
ApoI RAATTY 4 cut(s) 602, 1193, 1320, 1327
AspLEI GCGC 1 cut(s) 766
AspS9I GGNCC 3 cut(s) 580, 1027, 1295
AsuC2I CCSGG 1 cut(s) 41
AsuHPI GGTGA 2 cut(s) 825, 950
AsuII TTCGAA 2 cut(s) 1261, 1324
AvaII GGWCC 2 cut(s) 580, 1027
BaeGI GKGCMC 1 cut(s) 577
BalI TGGCCA 1 cut(s) 844
BauI CACGAG 1 cut(s) 13
BbvI GCAGC 8 cut(s) 56, 253, 304, 502, 658, 686, 697, 1324
BccI CCATC 2 cut(s) 425, 1214
BcgI CGANNNNNNTGC 2 cut(s) 521, 555
BciT130I CCWGG 5 cut(s) 224, 528, 789, 1031, 1289
BciVI GTATCC 2 cut(s) 1028, 1160
BclI TGATCA 1 cut(s) 439
BcnI CCSGG 1 cut(s) 41
BcoDI GTCTC 3 cut(s) 686, 865, 1075
BcuI ACTAGT 1 cut(s) 143
BfaI CTAG 4 cut(s) 144, 623, 678, 951
BfmI CTRYAG 4 cut(s) 321, 337, 672, 919
BfrI CTTAAG 1 cut(s) 245
BfuI GTATCC 2 cut(s) 1028, 1160
BisI GCNGC 9 cut(s) 45, 242, 318, 491, 672, 675, 711, 895, 1313
BlsI GCNGC 9 cut(s) 46, 243, 319, 492, 673, 676, 712, 896, 1314
BmcAI AGTACT 1 cut(s) 1064
Bme1390I CCNGG 6 cut(s) 41, 224, 528, 789, 1031, 1289
Bme18I GGWCC 2 cut(s) 580, 1027
BmeRI GACNNNNNGTC 1 cut(s) 914
BmgBI CACGTC 2 cut(s) 560, 1280
BmgT120I GGNCC 3 cut(s) 580, 1027, 1295
BmiI GGNNCC 1 cut(s) 984
BmrFI CCNGG 6 cut(s) 41, 224, 528, 789, 1031, 1289
BmrI ACTGGG 1 cut(s) 865
BmsI GCATC 3 cut(s) 186, 297, 792
BmuI ACTGGG 1 cut(s) 865
BpmI CTGGAG 1 cut(s) 630
Bpu14I TTCGAA 2 cut(s) 1261, 1324
BpuEI CTTGAG 3 cut(s) 43, 279, 791
BpuMI CCSGG 1 cut(s) 41
BsaJI CCNNGG 2 cut(s) 793, 1030
BsaWI WCCGGW 2 cut(s) 910, 1152
BsaXI ACNNNNNCTCC 2 cut(s) 1239, 1269
Bsc4I CCNNNNNNNGG 3 cut(s) 794, 1045, 1100
Bse1I ACTGG 5 cut(s) 509, 582, 583, 860, 1019
Bse3DI GCAATG 2 cut(s) 136, 1182
BseBI CCWGG 5 cut(s) 224, 528, 789, 1031, 1289
BseDI CCNNGG 2 cut(s) 793, 1030
BseGI GGATG 8 cut(s) 36, 63, 436, 807, 829, 865, 1144, 1225
BseLI CCNNNNNNNGG 3 cut(s) 794, 1045, 1100
BseMI GCAATG 2 cut(s) 136, 1182
BseMII CTCAG 4 cut(s) 120, 124, 440, 860
BseNI ACTGG 5 cut(s) 509, 582, 583, 860, 1019
BseSI GKGCMC 1 cut(s) 577
BseXI GCAGC 8 cut(s) 56, 253, 304, 502, 658, 686, 697, 1324
BsgI GTGCAG 2 cut(s) 260, 366
Bsh1236I CGCG 1 cut(s) 190
Bsh1285I CGRYCG 1 cut(s) 911
BshFI GGCC 7 cut(s) 159, 335, 526, 792, 844, 894, 1297
BsiEI CGRYCG 1 cut(s) 911
BsiSI CCGG 3 cut(s) 41, 911, 1153
BslFI GGGAC 1 cut(s) 972
BslI CCNNNNNNNGG 3 cut(s) 794, 1045, 1100
BsmAI GTCTC 3 cut(s) 686, 865, 1075
BsmFI GGGAC 1 cut(s) 972
BsnI GGCC 7 cut(s) 159, 335, 526, 792, 844, 894, 1297
Bsp119I TTCGAA 2 cut(s) 1261, 1324
Bsp1286I GDGCHC 1 cut(s) 577
Bsp143I GATC 8 cut(s) 9, 103, 250, 434, 439, 754, 773, 812
BspACI CCGC 4 cut(s) 117, 190, 220, 895
BspANI GGCC 7 cut(s) 159, 335, 526, 792, 844, 894, 1297
BspCNI CTCAG 4 cut(s) 121, 123, 439, 861
BspFNI CGCG 1 cut(s) 190
BspLI GGNNCC 1 cut(s) 984
BspMAI CTGCAG 2 cut(s) 341, 676
BspPI GGATC 4 cut(s) 17, 258, 442, 749
BspT104I TTCGAA 2 cut(s) 1261, 1324
BspTI CTTAAG 1 cut(s) 245
BsrDI GCAATG 2 cut(s) 136, 1182
BsrI ACTGG 5 cut(s) 509, 582, 583, 860, 1019
BssECI CCNNGG 2 cut(s) 793, 1030
BssMI GATC 8 cut(s) 9, 103, 250, 434, 439, 754, 773, 812
BssSI CACGAG 1 cut(s) 13
BssT1I CCWWGG 1 cut(s) 793
Bst2BI CACGAG 1 cut(s) 13
Bst2UI CCWGG 5 cut(s) 224, 528, 789, 1031, 1289
Bst4CI ACNGT 5 cut(s) 96, 186, 367, 963, 1009
BstAFI CTTAAG 1 cut(s) 245
BstAPI GCANNNNNTGC 1 cut(s) 748
BstBI TTCGAA 2 cut(s) 1261, 1324
BstC8I GCNNGC 1 cut(s) 337
BstDEI CTNAG 5 cut(s) 110, 129, 426, 869, 1075
BstENI CCTNNNNNAGG 1 cut(s) 1043
BstF5I GGATG 8 cut(s) 36, 63, 436, 807, 829, 865, 1144, 1225
BstFNI CGCG 1 cut(s) 190
BstHHI GCGC 1 cut(s) 766
BstKTI GATC 8 cut(s) 12, 106, 253, 437, 442, 757, 776, 815
BstMAI GTCTC 3 cut(s) 686, 865, 1075
BstMBI GATC 8 cut(s) 9, 103, 250, 434, 439, 754, 773, 812
BstMCI CGRYCG 1 cut(s) 911
BstMWI GCNNNNNNNGC 1 cut(s) 748
BstNI CCWGG 5 cut(s) 224, 528, 789, 1031, 1289
BstSCI CCNGG 6 cut(s) 39, 222, 526, 787, 1029, 1287
BstSFI CTRYAG 4 cut(s) 321, 337, 672, 919
BstSLI GKGCMC 1 cut(s) 577
BstUI CGCG 1 cut(s) 190
BstV1I GCAGC 8 cut(s) 56, 253, 304, 502, 658, 686, 697, 1324
BstX2I RGATCY 3 cut(s) 9, 250, 434
BstYI RGATCY 3 cut(s) 9, 250, 434
BsuI GTATCC 2 cut(s) 1028, 1160
BsuRI GGCC 7 cut(s) 159, 335, 526, 792, 844, 894, 1297
BtrI CACGTC 2 cut(s) 560, 1280
BtsCI GGATG 8 cut(s) 36, 63, 436, 807, 829, 865, 1144, 1225
BtsIMutI CAGTG 3 cut(s) 516, 516, 575
Cac8I GCNNGC 1 cut(s) 337
CaiI CAGNNNCTG 2 cut(s) 979, 1304
CfoI GCGC 1 cut(s) 766
Cfr13I GGNCC 3 cut(s) 580, 1027, 1295
CseI GACGC 1 cut(s) 94
Csp6I GTAC 2 cut(s) 544, 1063
CviAII CATG 5 cut(s) 52, 685, 720, 752, 944
CviQI GTAC 2 cut(s) 544, 1063
DdeI CTNAG 5 cut(s) 110, 129, 426, 869, 1075
DpnI GATC 8 cut(s) 11, 105, 252, 436, 441, 756, 775, 814
DpnII GATC 8 cut(s) 9, 103, 250, 434, 439, 754, 773, 812
DriI GACNNNNNGTC 1 cut(s) 914
EaeI YGGCCR 1 cut(s) 842
Eam1105I GACNNNNNGTC 1 cut(s) 914
Eco130I CCWWGG 1 cut(s) 793
Eco147I AGGCCT 2 cut(s) 159, 526
Eco47I GGWCC 2 cut(s) 580, 1027
EcoNI CCTNNNNNAGG 1 cut(s) 1043
EcoO109I RGGNCCY 1 cut(s) 1027
EcoRI GAATTC 1 cut(s) 1320
EcoRII CCWGG 5 cut(s) 222, 526, 787, 1029, 1287
EcoT14I CCWWGG 1 cut(s) 793
ErhI CCWWGG 1 cut(s) 793
FaeI CATG 5 cut(s) 55, 688, 723, 755, 947
FaqI GGGAC 1 cut(s) 972
FatI CATG 5 cut(s) 51, 684, 719, 751, 943
FbaI TGATCA 1 cut(s) 439
Fnu4HI GCNGC 9 cut(s) 45, 242, 318, 491, 672, 675, 711, 895, 1313
FokI GGATG 8 cut(s) 23, 50, 443, 814, 836, 872, 1151, 1232
Fsp4HI GCNGC 9 cut(s) 45, 242, 318, 491, 672, 675, 711, 895, 1313
FspBI CTAG 4 cut(s) 144, 623, 678, 951
GlaI GCGC 1 cut(s) 765
GluI GCNGC 9 cut(s) 45, 242, 318, 491, 672, 675, 711, 895, 1313
GsuI CTGGAG 1 cut(s) 630
HaeIII GGCC 7 cut(s) 159, 335, 526, 792, 844, 894, 1297
HapII CCGG 3 cut(s) 41, 911, 1153
HgaI GACGC 1 cut(s) 94
HhaI GCGC 1 cut(s) 766
Hin1II CATG 5 cut(s) 55, 688, 723, 755, 947
Hin6I GCGC 1 cut(s) 764
HinP1I GCGC 1 cut(s) 764
HincII GTYRAC 1 cut(s) 1012
HindII GTYRAC 1 cut(s) 1012
HinfI GANTC 3 cut(s) 125, 1263, 1301
HpaII CCGG 3 cut(s) 41, 911, 1153
HphI GGTGA 2 cut(s) 825, 950
Hpy166II GTNNAC 3 cut(s) 302, 941, 1012
Hpy188I TCNGA 4 cut(s) 130, 439, 778, 1108
Hpy8I GTNNAC 3 cut(s) 302, 941, 1012
HpyAV CCTTC 1 cut(s) 1210
HpyCH4III ACNGT 5 cut(s) 96, 186, 367, 963, 1009
HpyCH4IV ACGT 3 cut(s) 263, 559, 1279
HpyF10VI GCNNNNNNNGC 1 cut(s) 748
HpyF3I CTNAG 5 cut(s) 110, 129, 426, 869, 1075
HpySE526I ACGT 3 cut(s) 263, 559, 1279
Hsp92II CATG 5 cut(s) 55, 688, 723, 755, 947
HspAI GCGC 1 cut(s) 764
Ksp22I TGATCA 1 cut(s) 439
Kzo9I GATC 8 cut(s) 9, 103, 250, 434, 439, 754, 773, 812
LmnI GCTCC 1 cut(s) 649
Lsp1109I GCAGC 8 cut(s) 56, 253, 304, 502, 658, 686, 697, 1324
LweI GCATC 3 cut(s) 186, 297, 792
MaeI CTAG 4 cut(s) 144, 623, 678, 951
MaeII ACGT 3 cut(s) 263, 559, 1279
MaeIII GTNAC 4 cut(s) 17, 514, 560, 1003
MalI GATC 8 cut(s) 11, 105, 252, 436, 441, 756, 775, 814
MboI GATC 8 cut(s) 9, 103, 250, 434, 439, 754, 773, 812
MboII GAAGA 6 cut(s) 23, 218, 226, 242, 638, 1220
MflI RGATCY 3 cut(s) 9, 250, 434
MhlI GDGCHC 1 cut(s) 577
MlsI TGGCCA 1 cut(s) 844
MluCI AATT 9 cut(s) 476, 602, 639, 899, 931, 1095, 1193, 1320, 1327
MluNI TGGCCA 1 cut(s) 844
MnlI CCTC 9 cut(s) 66, 119, 149, 170, 212, 423, 661, 1039, 1239
Mox20I TGGCCA 1 cut(s) 844
MscI TGGCCA 1 cut(s) 844
MseI TTAA 5 cut(s) 246, 369, 380, 479, 1118
MslI CAYNNNNRTG 2 cut(s) 68, 838
Msp20I TGGCCA 1 cut(s) 844
MspCI CTTAAG 1 cut(s) 245
MspI CCGG 3 cut(s) 41, 911, 1153
MspR9I CCNGG 6 cut(s) 41, 224, 528, 789, 1031, 1289
MvaI CCWGG 5 cut(s) 224, 528, 789, 1031, 1289
MvnI CGCG 1 cut(s) 190
MwoI GCNNNNNNNGC 1 cut(s) 748
NciI CCSGG 1 cut(s) 41
NdeII GATC 8 cut(s) 9, 103, 250, 434, 439, 754, 773, 812
NlaIII CATG 5 cut(s) 55, 688, 723, 755, 947
NlaIV GGNNCC 1 cut(s) 984
NmuCI GTSAC 4 cut(s) 17, 514, 560, 1003
NspV TTCGAA 2 cut(s) 1261, 1324
OliI CACNNNNGTG 1 cut(s) 838
PceI AGGCCT 2 cut(s) 159, 526
PfeI GAWTC 3 cut(s) 125, 1263, 1301
PflFI GACNNNGTC 1 cut(s) 1112
PkrI GCNGC 9 cut(s) 46, 243, 319, 492, 673, 676, 712, 896, 1314
PpuMI RGGWCCY 1 cut(s) 1027
Psp5II RGGWCCY 1 cut(s) 1027
Psp6I CCWGG 5 cut(s) 222, 526, 787, 1029, 1287
PspGI CCWGG 5 cut(s) 222, 526, 787, 1029, 1287
PspN4I GGNNCC 1 cut(s) 984
PspPI GGNCC 3 cut(s) 580, 1027, 1295
PspPPI RGGWCCY 1 cut(s) 1027
PstI CTGCAG 2 cut(s) 341, 676
PstNI CAGNNNCTG 2 cut(s) 979, 1304
PsuI RGATCY 3 cut(s) 9, 250, 434
PsyI GACNNNGTC 1 cut(s) 1112
RsaI GTAC 2 cut(s) 545, 1064
RsaNI GTAC 2 cut(s) 544, 1063
RseI CAYNNNNRTG 2 cut(s) 68, 838
SaqAI TTAA 5 cut(s) 246, 369, 380, 479, 1118
SatI GCNGC 9 cut(s) 45, 242, 318, 491, 672, 675, 711, 895, 1313
Sau3AI GATC 8 cut(s) 9, 103, 250, 434, 439, 754, 773, 812
Sau96I GGNCC 3 cut(s) 580, 1027, 1295
ScaI AGTACT 1 cut(s) 1064
ScrFI CCNGG 6 cut(s) 41, 224, 528, 789, 1031, 1289
SduI GDGCHC 1 cut(s) 577
SfaNI GCATC 3 cut(s) 186, 297, 792
SfcI CTRYAG 4 cut(s) 321, 337, 672, 919
SfuI TTCGAA 2 cut(s) 1261, 1324
SinI GGWCC 2 cut(s) 580, 1027
SmiMI CAYNNNNRTG 2 cut(s) 68, 838
SmlI CTYRAG 4 cut(s) 22, 245, 294, 806
SmoI CTYRAG 4 cut(s) 22, 245, 294, 806
SpeI ACTAGT 1 cut(s) 143
Sse9I AATT 9 cut(s) 476, 602, 639, 899, 931, 1095, 1193, 1320, 1327
SseBI AGGCCT 2 cut(s) 159, 526
SsiI CCGC 4 cut(s) 117, 190, 220, 895
SspMI CTAG 4 cut(s) 144, 623, 678, 951
StuI AGGCCT 2 cut(s) 159, 526
StyD4I CCNGG 6 cut(s) 39, 222, 526, 787, 1029, 1287
StyI CCWWGG 1 cut(s) 793
TaaI ACNGT 5 cut(s) 96, 186, 367, 963, 1009
TaiI ACGT 3 cut(s) 266, 562, 1282
TaqI TCGA 8 cut(s) 123, 204, 610, 815, 907, 1231, 1261, 1324
TasI AATT 9 cut(s) 476, 602, 639, 899, 931, 1095, 1193, 1320, 1327
TatI WGTACW 1 cut(s) 1062
TauI GCSGC 1 cut(s) 897
TfiI GAWTC 3 cut(s) 125, 1263, 1301
Tru1I TTAA 5 cut(s) 246, 369, 380, 479, 1118
Tru9I TTAA 5 cut(s) 246, 369, 380, 479, 1118
TscAI CASTG 3 cut(s) 516, 523, 582
TseFI GTSAC 4 cut(s) 17, 514, 560, 1003
TseI GCWGC 8 cut(s) 44, 241, 317, 490, 671, 674, 710, 1312
Tsp45I GTSAC 4 cut(s) 17, 514, 560, 1003
TspDTI ATGAA 6 cut(s) 40, 46, 183, 227, 705, 892
TspRI CASTG 3 cut(s) 516, 523, 582
Tth111I GACNNNGTC 1 cut(s) 1112
Vha464I CTTAAG 1 cut(s) 245
VpaK11BI GGWCC 2 cut(s) 580, 1027
XagI CCTNNNNNAGG 1 cut(s) 1043
XapI RAATTY 4 cut(s) 602, 1193, 1320, 1327
XcmI CCANNNNNNNNNTGG 1 cut(s) 852
XspI CTAG 4 cut(s) 144, 623, 678, 951
ZrmI AGTACT 1 cut(s) 1064
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.