RLG00000013022

Alpha-1,3-mannosyl-glycoprotein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Reverse (-)
25035892 .. 25041906
6015 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013022

Sequence Viewer

Length: 1416 bp
ATGAAGAATTTTCTCTGCGATTTTCGCTTCCTCCTACTTCTCGCAGCGGCCGCCTTCATCTATATCCAGGTTCGGCTTTTCGCGACACAATCACAGTACGCTGATCGCCTCGCTGATGCGATAGAGTCAGAGAACCAGTGTACATCTCAGTTGAGATCACTAATTGATCAAATAAGCTTGCAACAAGGGCAAATTGAAACCATGAAAGAACAAAAGGAACAGCTAGAGCAAGAGTGTGGACAACTGAAGGCCCTTGTTCAAGAACTTGAAAGGAAAGGTGTTGAACGGTTGATTAACAAAGAACAGGTGCCAGTGGCAGCGGTTGTAATTATGGCATGCAATCGTGCTGATTATCTGGAAAGGACCATTAAGTCTGTATTAAAATACCAGAATTCTGTTGCCACGAAGTTTCCTCTATTTGTCTCCCAGGATGGATCTGATCTGGGTGTCAAAGATATGGCTTTGAGCTATGACCAGCTCACATATATGCAGCATTTGGATTATAAACCAGTTCAACCTGAAAGACCAGGGGAATTGATTGCATACTACAAAATTGCAAGTCATTACAAATGGGCACTGGATGGATTGTTCTACAACCATAAGTTCAGCCGAGTAATCATACTTGAAGATGATATGGAAATTGCTCCTGATTTTTTTGATTACTTTGAGGCTGCTGCAGCTCTCCTTGACAAGGATAAGTCTATCATGGCTGTTTCCTCATGGAATGACAATGGACAAAAGCAGTTTGTGCATGATCCAGAAGCACTTTATAGATCTGATTTCTTTCCCGGACTTGGGTGGATGCTGACTAGATCTACATGGGATGAGCTATCACCAAAGTGGCCAAAGTTTCTTCCAAAATGTTTTCTTTCACTATGGTTCACTTACTGGGATGACTGGTTGAGGTTACAAGAGAATCACAAAGGTCGACAATTTCTTCGTCCAGAAGTGTGCAGAACATATAACTTTGGGGAACATGGTTCTAGTCTGGGGCAGTTTTTCAAACAATATCTTGAGCCAATCAAGCTGAATGATGTCCCTGTTGACTGGAAATCAATGGATTTGAGCTACCTGGTGGAGGACAAGTATATAAAGCATTTTGCTGAGATTGTGAAAAAGGCTAAACCTGTCCATGGAGCTGATCTTGTACTGAAGGCACGCAATATGGCTGGTGATGTTCGTATACAGTACAATGACCAGCCAGACTTTGAACGCATTGCACATGAGTTTGGAATTTTTGAAGAGTGGAAGGATGGTATACCAAGGACAGCCTACAAAGGAGTAGTTGTTTTCCGACACCAAAACCCACAATGTATATTCCTTGTTGGTCCAGATTTCATGGGGAGAAAATGTATTTTTGAAGGTTCAACATTGAGGTGGCGATATCTATTGCAATTTGAGTTCCTGAGAACTTAA

Protein Analysis

472

Amino Acids

55.18

Weight (kDa)

6.0

Isoelectric Point (pI)

39.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GNT-I PF03071 15 - 445 6.3e-176 GNT-I family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 504
AasI GACNNNNNNGTC 1 cut(s) 370
AccB1I GGYRCC 1 cut(s) 307
AccI GTMKAC 3 cut(s) 928, 1183, 1258
AccII CGCG 1 cut(s) 83
AciI CCGC 3 cut(s) 47, 51, 320
AclWI GGATC 2 cut(s) 442, 749
AcoI YGGCCR 2 cut(s) 48, 842
AcsI RAATTY 3 cut(s) 7, 391, 1233
AcuI CTGAAG 2 cut(s) 266, 1172
AfaI GTAC 4 cut(s) 98, 142, 1149, 1190
AfiI CCNNNNNNNGG 5 cut(s) 691, 794, 795, 1078, 1133
AjnI CCWGG 4 cut(s) 66, 426, 526, 1071
AleI CACNNNNGTG 1 cut(s) 838
AloI GAACNNNNNNTCC 2 cut(s) 572, 604
AluBI AGCT 9 cut(s) 177, 223, 468, 478, 680, 829, 1027, 1068, 1139
AluI AGCT 9 cut(s) 177, 223, 468, 478, 680, 829, 1027, 1068, 1139
Alw26I GTCTC 1 cut(s) 427
AlwI GGATC 2 cut(s) 442, 749
AoxI GGCC 3 cut(s) 48, 249, 842
ApeKI GCWGC 6 cut(s) 44, 317, 490, 671, 674, 677
ApoI RAATTY 3 cut(s) 7, 391, 1233
ArsI GACNNNNNNTTYG 2 cut(s) 921, 953
AspS9I GGNCC 3 cut(s) 250, 363, 1328
AsuC2I CCSGG 1 cut(s) 789
AsuHPI GGTGA 2 cut(s) 825, 1184
AvaII GGWCC 2 cut(s) 363, 1328
BaeGI GKGCMC 1 cut(s) 577
BalI TGGCCA 1 cut(s) 844
BanI GGYRCC 1 cut(s) 307
BbvI GCAGC 6 cut(s) 56, 329, 502, 658, 661, 689
BccI CCATC 3 cut(s) 425, 575, 1247
BciT130I CCWGG 4 cut(s) 68, 428, 528, 1073
BclI TGATCA 1 cut(s) 166
BcnI CCSGG 1 cut(s) 789
BcoDI GTCTC 1 cut(s) 427
BfaI CTAG 3 cut(s) 224, 810, 984
BfmI CTRYAG 1 cut(s) 675
BglII AGATCT 2 cut(s) 773, 812
BisI GCNGC 8 cut(s) 45, 48, 51, 318, 491, 672, 675, 678
BlsI GCNGC 8 cut(s) 46, 49, 52, 319, 492, 673, 676, 679
Bme1390I CCNGG 5 cut(s) 68, 428, 528, 789, 1073
Bme18I GGWCC 2 cut(s) 363, 1328
BmgT120I GGNCC 3 cut(s) 250, 363, 1328
BmiI GGNNCC 1 cut(s) 309
BmrFI CCNGG 5 cut(s) 68, 428, 528, 789, 1073
BmrI ACTGGG 1 cut(s) 898
BmsI GCATC 2 cut(s) 106, 792
BmuI ACTGGG 1 cut(s) 898
BpuEI CTTGAG 1 cut(s) 1034
BpuMI CCSGG 1 cut(s) 789
BsaJI CCNNGG 4 cut(s) 426, 527, 1132, 1262
BsaXI ACNNNNNCTCC 6 cut(s) 1070, 1100, 1272, 1302, 1336, 1366
Bsc4I CCNNNNNNNGG 5 cut(s) 691, 794, 795, 1078, 1133
Bse1I ACTGG 7 cut(s) 136, 311, 509, 582, 893, 902, 1052
Bse3DI GCAATG 1 cut(s) 1215
BseBI CCWGG 4 cut(s) 68, 428, 528, 1073
BseDI CCNNGG 4 cut(s) 426, 527, 1132, 1262
BseGI GGATG 6 cut(s) 436, 586, 807, 829, 898, 1258
BseLI CCNNNNNNNGG 5 cut(s) 691, 794, 795, 1078, 1133
BseMI GCAATG 1 cut(s) 1215
BseMII CTCAG 3 cut(s) 161, 1095, 1397
BseNI ACTGG 7 cut(s) 136, 311, 509, 582, 893, 902, 1052
BseSI GKGCMC 1 cut(s) 577
BseX3I CGGCCG 1 cut(s) 48
BseXI GCAGC 6 cut(s) 56, 329, 502, 658, 661, 689
BsgI GTGCAG 1 cut(s) 973
Bsh1236I CGCG 1 cut(s) 83
Bsh1285I CGRYCG 1 cut(s) 51
BshFI GGCC 3 cut(s) 50, 251, 844
BshNI GGYRCC 1 cut(s) 307
BsiEI CGRYCG 1 cut(s) 51
BsiSI CCGG 1 cut(s) 789
BslFI GGGAC 1 cut(s) 1022
BslI CCNNNNNNNGG 5 cut(s) 691, 794, 795, 1078, 1133
BsmAI GTCTC 1 cut(s) 427
BsmFI GGGAC 1 cut(s) 1022
BsnI GGCC 3 cut(s) 50, 251, 844
Bsp1286I GDGCHC 1 cut(s) 577
Bsp1407I TGTACA 1 cut(s) 140
Bsp143I GATC 9 cut(s) 103, 155, 166, 434, 439, 754, 773, 812, 1141
Bsp19I CCATGG 1 cut(s) 1132
Bsp68I TCGCGA 1 cut(s) 83
BspACI CCGC 3 cut(s) 47, 51, 320
BspANI GGCC 3 cut(s) 50, 251, 844
BspCNI CTCAG 3 cut(s) 160, 1096, 1398
BspFNI CGCG 1 cut(s) 83
BspLI GGNNCC 1 cut(s) 309
BspMAI CTGCAG 1 cut(s) 679
BspPI GGATC 2 cut(s) 442, 749
BspT107I GGYRCC 1 cut(s) 307
BsrDI GCAATG 1 cut(s) 1215
BsrGI TGTACA 1 cut(s) 140
BsrI ACTGG 7 cut(s) 136, 311, 509, 582, 893, 902, 1052
BssECI CCNNGG 4 cut(s) 426, 527, 1132, 1262
BssMI GATC 9 cut(s) 103, 155, 166, 434, 439, 754, 773, 812, 1141
BssNAI GTATAC 2 cut(s) 1184, 1259
BssT1I CCWWGG 2 cut(s) 1132, 1262
Bst1107I GTATAC 2 cut(s) 1184, 1259
Bst2UI CCWGG 4 cut(s) 68, 428, 528, 1073
Bst4CI ACNGT 3 cut(s) 96, 288, 1188
Bst6I CTCTTC 1 cut(s) 1236
BstAPI GCANNNNNTGC 1 cut(s) 748
BstAUI TGTACA 1 cut(s) 140
BstC8I GCNNGC 3 cut(s) 179, 337, 1159
BstDEI CTNAG 3 cut(s) 147, 1104, 1406
BstDSI CCRYGG 1 cut(s) 1132
BstENI CCTNNNNNAGG 2 cut(s) 689, 1076
BstF5I GGATG 6 cut(s) 436, 586, 807, 829, 898, 1258
BstFNI CGCG 1 cut(s) 83
BstKTI GATC 9 cut(s) 106, 158, 169, 437, 442, 757, 776, 815, 1144
BstMAI GTCTC 1 cut(s) 427
BstMBI GATC 9 cut(s) 103, 155, 166, 434, 439, 754, 773, 812, 1141
BstMCI CGRYCG 1 cut(s) 51
BstMWI GCNNNNNNNGC 6 cut(s) 24, 50, 187, 677, 748, 1024
BstNI CCWGG 4 cut(s) 68, 428, 528, 1073
BstNSI RCATGY 1 cut(s) 339
BstSCI CCNGG 5 cut(s) 66, 426, 526, 787, 1071
BstSFI CTRYAG 1 cut(s) 675
BstSLI GKGCMC 1 cut(s) 577
BstUI CGCG 1 cut(s) 83
BstV1I GCAGC 6 cut(s) 56, 329, 502, 658, 661, 689
BstX2I RGATCY 3 cut(s) 434, 773, 812
BstYI RGATCY 3 cut(s) 434, 773, 812
BstZ17I GTATAC 2 cut(s) 1184, 1259
BstZI CGGCCG 1 cut(s) 48
BsuRI GGCC 3 cut(s) 50, 251, 844
BtgI CCRYGG 1 cut(s) 1132
BtsCI GGATG 6 cut(s) 436, 586, 807, 829, 898, 1258
BtsIMutI CAGTG 3 cut(s) 143, 318, 575
BtuMI TCGCGA 1 cut(s) 83
Cac8I GCNNGC 3 cut(s) 179, 337, 1159
CciNI GCGGCCGC 1 cut(s) 48
Cfr13I GGNCC 3 cut(s) 250, 363, 1328
CsiI ACCWGGT 1 cut(s) 1071
Csp6I GTAC 4 cut(s) 97, 141, 1148, 1189
CviQI GTAC 4 cut(s) 97, 141, 1148, 1189
DdeI CTNAG 3 cut(s) 147, 1104, 1406
DpnI GATC 9 cut(s) 105, 157, 168, 436, 441, 756, 775, 814, 1143
DpnII GATC 9 cut(s) 103, 155, 166, 434, 439, 754, 773, 812, 1141
DrdI GACNNNNNNGTC 1 cut(s) 370
DseDI GACNNNNNNGTC 1 cut(s) 370
EaeI YGGCCR 2 cut(s) 48, 842
EagI CGGCCG 1 cut(s) 48
Eam1104I CTCTTC 1 cut(s) 1236
EarI CTCTTC 1 cut(s) 1236
EclXI CGGCCG 1 cut(s) 48
Eco130I CCWWGG 2 cut(s) 1132, 1262
Eco32I GATATC 1 cut(s) 1385
Eco47I GGWCC 2 cut(s) 363, 1328
Eco52I CGGCCG 1 cut(s) 48
Eco57I CTGAAG 2 cut(s) 266, 1172
EcoNI CCTNNNNNAGG 2 cut(s) 689, 1076
EcoO109I RGGNCCY 1 cut(s) 250
EcoRI GAATTC 1 cut(s) 391
EcoRII CCWGG 4 cut(s) 66, 426, 526, 1071
EcoRV GATATC 1 cut(s) 1385
EcoT14I CCWWGG 2 cut(s) 1132, 1262
ErhI CCWWGG 2 cut(s) 1132, 1262
FaqI GGGAC 1 cut(s) 1022
FbaI TGATCA 1 cut(s) 166
FblI GTMKAC 3 cut(s) 928, 1183, 1258
Fnu4HI GCNGC 8 cut(s) 45, 48, 51, 318, 491, 672, 675, 678
FokI GGATG 6 cut(s) 443, 593, 814, 836, 905, 1265
Fsp4HI GCNGC 8 cut(s) 45, 48, 51, 318, 491, 672, 675, 678
FspBI CTAG 3 cut(s) 224, 810, 984
GluI GCNGC 8 cut(s) 45, 48, 51, 318, 491, 672, 675, 678
HaeIII GGCC 3 cut(s) 50, 251, 844
HapII CCGG 1 cut(s) 789
HincII GTYRAC 2 cut(s) 929, 1045
HindII GTYRAC 2 cut(s) 929, 1045
HindIII AAGCTT 1 cut(s) 175
HinfI GANTC 2 cut(s) 125, 916
HpaII CCGG 1 cut(s) 789
HphI GGTGA 2 cut(s) 825, 1184
Hpy166II GTNNAC 7 cut(s) 141, 239, 882, 929, 1045, 1184, 1259
Hpy188I TCNGA 4 cut(s) 130, 439, 778, 1295
Hpy188III TCNNGA 9 cut(s) 82, 260, 356, 647, 758, 944, 1013, 1331, 1405
Hpy8I GTNNAC 7 cut(s) 141, 239, 882, 929, 1045, 1184, 1259
HpyAV CCTTC 5 cut(s) 64, 241, 1147, 1243, 1355
HpyCH4III ACNGT 3 cut(s) 96, 288, 1188
HpyF10VI GCNNNNNNNGC 6 cut(s) 24, 50, 187, 677, 748, 1024
HpyF3I CTNAG 3 cut(s) 147, 1104, 1406
Ksp22I TGATCA 1 cut(s) 166
Kzo9I GATC 9 cut(s) 103, 155, 166, 434, 439, 754, 773, 812, 1141
LmnI GCTCC 2 cut(s) 649, 1136
Lsp1109I GCAGC 6 cut(s) 56, 329, 502, 658, 661, 689
LweI GCATC 2 cut(s) 106, 792
MabI ACCWGGT 1 cut(s) 1071
MaeI CTAG 3 cut(s) 224, 810, 984
MaeIII GTNAC 1 cut(s) 906
MalI GATC 9 cut(s) 105, 157, 168, 436, 441, 756, 775, 814, 1143
MboI GATC 9 cut(s) 103, 155, 166, 434, 439, 754, 773, 812, 1141
MboII GAAGA 5 cut(s) 16, 638, 845, 929, 1253
MflI RGATCY 3 cut(s) 434, 773, 812
MhlI GDGCHC 1 cut(s) 577
MlsI TGGCCA 1 cut(s) 844
MluNI TGGCCA 1 cut(s) 844
MlyI GAGTC 1 cut(s) 134
MmeI TCCRAC 1 cut(s) 1318
MnlI CCTC 8 cut(s) 41, 119, 423, 661, 727, 897, 1072, 1368
Mox20I TGGCCA 1 cut(s) 844
MscI TGGCCA 1 cut(s) 844
MseI TTAA 4 cut(s) 294, 369, 380, 1414
MslI CAYNNNNRTG 3 cut(s) 485, 838, 1375
Msp20I TGGCCA 1 cut(s) 844
MspA1I CMGCKG 2 cut(s) 47, 320
MspI CCGG 1 cut(s) 789
MspR9I CCNGG 5 cut(s) 68, 428, 528, 789, 1073
MvaI CCWGG 4 cut(s) 68, 428, 528, 1073
MvnI CGCG 1 cut(s) 83
MwoI GCNNNNNNNGC 6 cut(s) 24, 50, 187, 677, 748, 1024
NciI CCSGG 1 cut(s) 789
NcoI CCATGG 1 cut(s) 1132
NdeII GATC 9 cut(s) 103, 155, 166, 434, 439, 754, 773, 812, 1141
NlaIV GGNNCC 1 cut(s) 309
NmeAIII GCCGAG 1 cut(s) 635
NotI GCGGCCGC 1 cut(s) 48
NruI TCGCGA 1 cut(s) 83
NspI RCATGY 1 cut(s) 339
OliI CACNNNNGTG 1 cut(s) 838
PaeI GCATGC 1 cut(s) 339
PfeI GAWTC 1 cut(s) 916
PfoI TCCNGGA 1 cut(s) 787
PkrI GCNGC 8 cut(s) 46, 49, 52, 319, 492, 673, 676, 679
PleI GAGTC 1 cut(s) 133
PpsI GAGTC 1 cut(s) 133
PsiI TTATAA 1 cut(s) 504
Psp6I CCWGG 4 cut(s) 66, 426, 526, 1071
PspGI CCWGG 4 cut(s) 66, 426, 526, 1071
PspN4I GGNNCC 1 cut(s) 309
PspPI GGNCC 3 cut(s) 250, 363, 1328
PstI CTGCAG 1 cut(s) 679
PsuI RGATCY 3 cut(s) 434, 773, 812
RruI TCGCGA 1 cut(s) 83
RsaI GTAC 4 cut(s) 98, 142, 1149, 1190
RsaNI GTAC 4 cut(s) 97, 141, 1148, 1189
RseI CAYNNNNRTG 3 cut(s) 485, 838, 1375
SalI GTCGAC 1 cut(s) 927
SaqAI TTAA 4 cut(s) 294, 369, 380, 1414
SatI GCNGC 8 cut(s) 45, 48, 51, 318, 491, 672, 675, 678
Sau3AI GATC 9 cut(s) 103, 155, 166, 434, 439, 754, 773, 812, 1141
Sau96I GGNCC 3 cut(s) 250, 363, 1328
SchI GAGTC 1 cut(s) 134
ScrFI CCNGG 5 cut(s) 68, 428, 528, 789, 1073
SduI GDGCHC 1 cut(s) 577
SexAI ACCWGGT 1 cut(s) 1071
SfaNI GCATC 2 cut(s) 106, 792
SfcI CTRYAG 1 cut(s) 675
SinI GGWCC 2 cut(s) 363, 1328
SmiMI CAYNNNNRTG 3 cut(s) 485, 838, 1375
SmlI CTYRAG 1 cut(s) 1013
SmoI CTYRAG 1 cut(s) 1013
SphI GCATGC 1 cut(s) 339
SsiI CCGC 3 cut(s) 47, 51, 320
SspMI CTAG 3 cut(s) 224, 810, 984
StyD4I CCNGG 5 cut(s) 66, 426, 526, 787, 1071
StyI CCWWGG 2 cut(s) 1132, 1262
TaaI ACNGT 3 cut(s) 96, 288, 1188
TaqI TCGA 1 cut(s) 928
TatI WGTACW 3 cut(s) 140, 1147, 1188
TauI GCSGC 2 cut(s) 50, 53
TfiI GAWTC 1 cut(s) 916
Tru1I TTAA 4 cut(s) 294, 369, 380, 1414
Tru9I TTAA 4 cut(s) 294, 369, 380, 1414
TscAI CASTG 3 cut(s) 143, 318, 582
TseI GCWGC 6 cut(s) 44, 317, 490, 671, 674, 677
TspDTI ATGAA 4 cut(s) 17, 46, 218, 1327
TspRI CASTG 3 cut(s) 143, 318, 582
VpaK11BI GGWCC 2 cut(s) 363, 1328
XagI CCTNNNNNAGG 2 cut(s) 689, 1076
XapI RAATTY 3 cut(s) 7, 391, 1233
XceI RCATGY 1 cut(s) 339
XmiI GTMKAC 3 cut(s) 928, 1183, 1258
XspI CTAG 3 cut(s) 224, 810, 984
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.