Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0005323

Physical Location & Seq

Genomic Coordinates Forward (+)

43867070 .. 43873444

Gene Structure 6375 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG248900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1254 bp

ATGAAGAATTTTCTCTGCGATTTTCGCTTCCTCCTACTCCTCGCAGCTGCCGCCTTCATCTATATCCAGGTTCGGCTTTTCGCGACACAATCACAGTATGCTGATCGCCTCGCTGATGCGATAGAGTCAGAGAACCAGTGTACATCTCAATTGAGATCACTAATTGATCAAATAAGCATGCAACAAGGGCAAATTGAAACCATGAAAGAACAAAAGGAACAGCTAGAGCAAGAGTGTGGACAACTGAAGGCCCTTGTTCAAGAACTTGAAAGGAAAGGTGTTGAACGGTTGATTAACAAAGAACAGGTGCCAGTGGCAGCAGTTGTAATTATGGCATGCAATCGTGCTGACTATCTGGAAAGGACCATTAAGTCTGTATTAAAATACCAGAATTCTGTTGCCACGAAGTTTCCTCTATTTGTCTCCCAGGATGGATCTGATCCGGGTGTCAAAGATACGGCTTTGAGCTATGAACAGCTCACGTATATGCAGCATTTGGATTATAAACCAGTTCAACCTGAAAGACCAGGGGAATTGATTGCATACTACAAAATTGCAAATCATTACAAATGGGCACTGGATGGATTGTTCTACAAGCATAAGTTCAGCCGAGTAATCATACTTGAAGATGATATGGAAATTGCTCCCGATTTTTTTGATTACTTTGAAGCTGCTGCCGATCTCCTTGAGAAGGATAAGTCTATCATGGCTGTTTCCTCATGGAATGACAATGGACAAAAGCAGTTTGTGCATGATCCAGAAGCGCTTTATAGATCTGATTTCTTTCCTGGACTTGGGTGGATGCTGACTAGATCTACATGGGATGAGCTATCACCGAAGTGGCCAAAGGCATATCCTTGTTATTGTAAGAATCACAAAGGTCGACAATTTCTTCGTCCAGAAGTGTGCAGAACATATAACTTTGGGGAACATGGTTCTAGTCTGGGGCAGTTTTTCAAACAATATCTTGAGCCAATCAAGCTGAATGATGTCCCTGTTGACTGGAAATCAAGGGATTTGAGCTACCTGATGGAGGACAAGTATATAAAGCATTTTGCTGAGATTGTGAAAAAGGCTAAACCTGTCCATGGAGCTGATCTTGTACTGAAGGCACGCAATATGGCTGGTGATGTTCGTATACAGTACAATGACCAGCGAGACTTTGAACGCATTGCACATGAGTTTGGAATTTTTGAAGAGTGGAAGGTCATTTCTGTTTTAAATCAAATGATTTTTCCTCAATTTTACAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003827 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006464 GO:0006486 GO:0006491 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0008194 GO:0008375 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009628 GO:0009987 GO:0012505 GO:0016262 GO:0016740 GO:0016757 GO:0016758 GO:0019538 GO:0031410 GO:0031982 GO:0031984 GO:0034645 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0070085 GO:0071704 GO:0097708 GO:0098791 GO:0140096 GO:0140103 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 map00510 map00513 map01100

Pfam Domains

Protein Families

GNT-I

Protein Analysis

417

Amino Acids

48.74

Weight (kDa)

6.06

Isoelectric Point (pI)

37.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GNT-I	PF03071	15 - 402	1.6e-157	GNT-I family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005323)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38240 AT4G38240 AT4G38240
fragaria_vesca	FvH4_2g16770 FvH4_2g16770 FvH4_2g16770 FvH4_2g16770 FvH4_2g16770 FvH4_2g16770
malus_domestica	MD05G1138700.v1.1 MD10G1141600.v1.1
prunus_persica	Prupe.8G179800_v2.0.a1 Prupe.8G179800_v2.0.a1 Prupe.8G179800_v2.0.a1 Prupe.8G179800_v2.0.a1 Prupe.8G179800_v2.0.a1 Prupe.8G179800_v2.0.a1 Prupe.8G179800_v2.0.a1
pyrus_communis	pycom05g13380 pycom10g12120
rosa_chinensis	RchiOBHm_Chr6g0280891
rosa_laevigata	RLG00000013022
rosa_roxburghii	Rroxscaffold_7G00187520
rosa_rugosa	Rorug06G0136000
rosa_samantha	Rh6AG248900 Rh6BG250800 Rh6CG251600 Rh6DG243300
rosa_wichuraiana	Rw6G021520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	504
AasI	GACNNNNNNGTC	1 cut(s)	370
AccB1I	GGYRCC	1 cut(s)	307
AccI	GTMKAC	2 cut(s)	883, 1138
AccII	CGCG	1 cut(s)	83
AciI	CCGC	1 cut(s)	51
AclWI	GGATC	3 cut(s)	434, 442, 749
AcoI	YGGCCR	1 cut(s)	842
AcsI	RAATTY	3 cut(s)	7, 391, 1188
AcuI	CTGAAG	2 cut(s)	266, 1127
AfaI	GTAC	3 cut(s)	142, 1104, 1145
AfeI	AGCGCT	1 cut(s)	765
AfiI	CCNNNNNNNGG	4 cut(s)	691, 794, 1033, 1088
AjnI	CCWGG	4 cut(s)	66, 426, 526, 787
AleI	CACNNNNGTG	1 cut(s)	838
AloI	GAACNNNNNNTCC	2 cut(s)	572, 604
AluBI	AGCT	9 cut(s)	47, 223, 468, 478, 671, 829, 982, 1023, 1094
AluI	AGCT	9 cut(s)	47, 223, 468, 478, 671, 829, 982, 1023, 1094
Alw26I	GTCTC	2 cut(s)	427, 1152
AlwI	GGATC	3 cut(s)	434, 442, 749
Aor51HI	AGCGCT	1 cut(s)	765
AoxI	GGCC	2 cut(s)	249, 842
ApeKI	GCWGC	6 cut(s)	44, 47, 317, 490, 671, 674
ApoI	RAATTY	3 cut(s)	7, 391, 1188
ArsI	GACNNNNNNTTYG	2 cut(s)	876, 908
AspLEI	GCGC	1 cut(s)	766
AspS9I	GGNCC	2 cut(s)	250, 363
AsuC2I	CCSGG	1 cut(s)	444
AsuHPI	GGTGA	2 cut(s)	825, 1139
AvaII	GGWCC	1 cut(s)	363
BaeGI	GKGCMC	1 cut(s)	577
BalI	TGGCCA	1 cut(s)	844
BanI	GGYRCC	1 cut(s)	307
BbvI	GCAGC	6 cut(s)	34, 56, 329, 502, 658, 661
BccI	CCATC	3 cut(s)	425, 575, 1024
BceAI	ACGGC	1 cut(s)	474
BciT130I	CCWGG	4 cut(s)	68, 428, 528, 789
BclI	TGATCA	1 cut(s)	166
BcnI	CCSGG	1 cut(s)	444
BcoDI	GTCTC	2 cut(s)	427, 1152
BfaI	CTAG	3 cut(s)	224, 810, 939
BfoI	RGCGCY	1 cut(s)	767
BglII	AGATCT	2 cut(s)	773, 812
BisI	GCNGC	7 cut(s)	45, 48, 51, 318, 491, 672, 675
BlsI	GCNGC	7 cut(s)	46, 49, 52, 319, 492, 673, 676
Bme1390I	CCNGG	5 cut(s)	68, 428, 444, 528, 789
Bme18I	GGWCC	1 cut(s)	363
BmgT120I	GGNCC	2 cut(s)	250, 363
BmiI	GGNNCC	1 cut(s)	309
BmrFI	CCNGG	5 cut(s)	68, 428, 444, 528, 789
BmsI	GCATC	2 cut(s)	106, 792
BpuEI	CTTGAG	2 cut(s)	707, 989
BpuMI	CCSGG	1 cut(s)	444
BsaAI	YACGTR	1 cut(s)	483
BsaJI	CCNNGG	3 cut(s)	426, 527, 1087
BsaXI	ACNNNNNCTCC	2 cut(s)	1025, 1055
Bsc4I	CCNNNNNNNGG	4 cut(s)	691, 794, 1033, 1088
Bse1I	ACTGG	5 cut(s)	136, 311, 509, 582, 1007
Bse3DI	GCAATG	1 cut(s)	1170
BseBI	CCWGG	4 cut(s)	68, 428, 528, 789
BseDI	CCNNGG	3 cut(s)	426, 527, 1087
BseGI	GGATG	4 cut(s)	436, 586, 807, 829
BseLI	CCNNNNNNNGG	4 cut(s)	691, 794, 1033, 1088
BseMI	GCAATG	1 cut(s)	1170
BseMII	CTCAG	1 cut(s)	1050
BseNI	ACTGG	5 cut(s)	136, 311, 509, 582, 1007
BseRI	GAGGAG	1 cut(s)	29
BseSI	GKGCMC	1 cut(s)	577
BseXI	GCAGC	6 cut(s)	34, 56, 329, 502, 658, 661
BsgI	GTGCAG	1 cut(s)	928
Bsh1236I	CGCG	1 cut(s)	83
BshFI	GGCC	2 cut(s)	251, 844
BshNI	GGYRCC	1 cut(s)	307
BsiSI	CCGG	1 cut(s)	443
BslFI	GGGAC	1 cut(s)	977
BslI	CCNNNNNNNGG	4 cut(s)	691, 794, 1033, 1088
BsmAI	GTCTC	2 cut(s)	427, 1152
BsmFI	GGGAC	1 cut(s)	977
BsnI	GGCC	2 cut(s)	251, 844
Bsp1286I	GDGCHC	1 cut(s)	577
Bsp1407I	TGTACA	1 cut(s)	140
Bsp19I	CCATGG	1 cut(s)	1087
Bsp68I	TCGCGA	1 cut(s)	83
BspACI	CCGC	1 cut(s)	51
BspANI	GGCC	2 cut(s)	251, 844
BspCNI	CTCAG	1 cut(s)	1051
BspFNI	CGCG	1 cut(s)	83
BspLI	GGNNCC	1 cut(s)	309
BspPI	GGATC	3 cut(s)	434, 442, 749
BspT107I	GGYRCC	1 cut(s)	307
BsrDI	GCAATG	1 cut(s)	1170
BsrGI	TGTACA	1 cut(s)	140
BsrI	ACTGG	5 cut(s)	136, 311, 509, 582, 1007
BssECI	CCNNGG	3 cut(s)	426, 527, 1087
BssNAI	GTATAC	1 cut(s)	1139
BssT1I	CCWWGG	1 cut(s)	1087
Bst1107I	GTATAC	1 cut(s)	1139
Bst2UI	CCWGG	4 cut(s)	68, 428, 528, 789
Bst4CI	ACNGT	3 cut(s)	96, 288, 1143
Bst6I	CTCTTC	1 cut(s)	1191
BstAPI	GCANNNNNTGC	1 cut(s)	748
BstAUI	TGTACA	1 cut(s)	140
BstBAI	YACGTR	1 cut(s)	483
BstC8I	GCNNGC	3 cut(s)	179, 337, 1114
BstDEI	CTNAG	1 cut(s)	1059
BstDSI	CCRYGG	1 cut(s)	1087
BstENI	CCTNNNNNAGG	2 cut(s)	689, 1031
BstF5I	GGATG	4 cut(s)	436, 586, 807, 829
BstFNI	CGCG	1 cut(s)	83
BstH2I	RGCGCY	1 cut(s)	767
BstHHI	GCGC	1 cut(s)	766
BstMAI	GTCTC	2 cut(s)	427, 1152
BstMWI	GCNNNNNNNGC	5 cut(s)	24, 50, 187, 748, 979
BstNI	CCWGG	4 cut(s)	68, 428, 528, 789
BstNSI	RCATGY	2 cut(s)	181, 339
BstSCI	CCNGG	5 cut(s)	66, 426, 442, 526, 787
BstSLI	GKGCMC	1 cut(s)	577
BstUI	CGCG	1 cut(s)	83
BstV1I	GCAGC	6 cut(s)	34, 56, 329, 502, 658, 661
BstX2I	RGATCY	3 cut(s)	434, 773, 812
BstYI	RGATCY	3 cut(s)	434, 773, 812
BstZ17I	GTATAC	1 cut(s)	1139
BsuRI	GGCC	2 cut(s)	251, 844
BtgI	CCRYGG	1 cut(s)	1087
BtsCI	GGATG	4 cut(s)	436, 586, 807, 829
BtsIMutI	CAGTG	3 cut(s)	143, 318, 575
BtuMI	TCGCGA	1 cut(s)	83
Cac8I	GCNNGC	3 cut(s)	179, 337, 1114
CfoI	GCGC	1 cut(s)	766
Cfr13I	GGNCC	2 cut(s)	250, 363
Csp6I	GTAC	3 cut(s)	141, 1103, 1144
CviQI	GTAC	3 cut(s)	141, 1103, 1144
DdeI	CTNAG	1 cut(s)	1059
DraI	TTTAAA	1 cut(s)	1221
DrdI	GACNNNNNNGTC	1 cut(s)	370
DseDI	GACNNNNNNGTC	1 cut(s)	370
EaeI	YGGCCR	1 cut(s)	842
Eam1104I	CTCTTC	1 cut(s)	1191
EarI	CTCTTC	1 cut(s)	1191
Eco130I	CCWWGG	1 cut(s)	1087
Eco47I	GGWCC	1 cut(s)	363
Eco47III	AGCGCT	1 cut(s)	765
Eco57I	CTGAAG	2 cut(s)	266, 1127
EcoNI	CCTNNNNNAGG	2 cut(s)	689, 1031
EcoO109I	RGGNCCY	1 cut(s)	250
EcoRI	GAATTC	1 cut(s)	391
EcoRII	CCWGG	4 cut(s)	66, 426, 526, 787
EcoT14I	CCWWGG	1 cut(s)	1087
ErhI	CCWWGG	1 cut(s)	1087
FaqI	GGGAC	1 cut(s)	977
FbaI	TGATCA	1 cut(s)	166
FblI	GTMKAC	2 cut(s)	883, 1138
Fnu4HI	GCNGC	7 cut(s)	45, 48, 51, 318, 491, 672, 675
FokI	GGATG	4 cut(s)	443, 593, 814, 836
Fsp4HI	GCNGC	7 cut(s)	45, 48, 51, 318, 491, 672, 675
FspBI	CTAG	3 cut(s)	224, 810, 939
GlaI	GCGC	1 cut(s)	765
GluI	GCNGC	7 cut(s)	45, 48, 51, 318, 491, 672, 675
HaeII	RGCGCY	1 cut(s)	767
HaeIII	GGCC	2 cut(s)	251, 844
HapII	CCGG	1 cut(s)	443
HhaI	GCGC	1 cut(s)	766
Hin6I	GCGC	1 cut(s)	764
HinP1I	GCGC	1 cut(s)	764
HincII	GTYRAC	2 cut(s)	884, 1000
HindII	GTYRAC	2 cut(s)	884, 1000
HinfI	GANTC	2 cut(s)	125, 871
HpaII	CCGG	1 cut(s)	443
HphI	GGTGA	2 cut(s)	825, 1139
Hpy166II	GTNNAC	5 cut(s)	141, 239, 884, 1000, 1139
Hpy188I	TCNGA	3 cut(s)	130, 439, 778
Hpy188III	TCNNGA	7 cut(s)	82, 260, 356, 647, 758, 899, 968
Hpy8I	GTNNAC	5 cut(s)	141, 239, 884, 1000, 1139
HpyAV	CCTTC	5 cut(s)	64, 241, 685, 1102, 1198
HpyCH4III	ACNGT	3 cut(s)	96, 288, 1143
HpyCH4IV	ACGT	1 cut(s)	482
HpyCH4V	TGCA	8 cut(s)	181, 339, 490, 542, 557, 751, 909, 1175
HpyF10VI	GCNNNNNNNGC	5 cut(s)	24, 50, 187, 748, 979
HpyF3I	CTNAG	1 cut(s)	1059
HpySE526I	ACGT	1 cut(s)	482
HspAI	GCGC	1 cut(s)	764
Ksp22I	TGATCA	1 cut(s)	166
LmnI	GCTCC	2 cut(s)	649, 1091
Lsp1109I	GCAGC	6 cut(s)	34, 56, 329, 502, 658, 661
LweI	GCATC	2 cut(s)	106, 792
MaeI	CTAG	3 cut(s)	224, 810, 939
MaeII	ACGT	1 cut(s)	482
MboII	GAAGA	4 cut(s)	16, 638, 884, 1208
MfeI	CAATTG	1 cut(s)	149
MflI	RGATCY	3 cut(s)	434, 773, 812
MhlI	GDGCHC	1 cut(s)	577
MlsI	TGGCCA	1 cut(s)	844
MluNI	TGGCCA	1 cut(s)	844
MlyI	GAGTC	1 cut(s)	134
MnlI	CCTC	7 cut(s)	41, 50, 119, 423, 727, 1027, 1248
Mox20I	TGGCCA	1 cut(s)	844
MscI	TGGCCA	1 cut(s)	844
MseI	TTAA	4 cut(s)	294, 369, 380, 1220
MslI	CAYNNNNRTG	2 cut(s)	485, 838
Msp20I	TGGCCA	1 cut(s)	844
MspA1I	CMGCKG	1 cut(s)	47
MspI	CCGG	1 cut(s)	443
MspR9I	CCNGG	5 cut(s)	68, 428, 444, 528, 789
MunI	CAATTG	1 cut(s)	149
MvaI	CCWGG	4 cut(s)	68, 428, 528, 789
MvnI	CGCG	1 cut(s)	83
MwoI	GCNNNNNNNGC	5 cut(s)	24, 50, 187, 748, 979
NciI	CCSGG	1 cut(s)	444
NcoI	CCATGG	1 cut(s)	1087
NlaIV	GGNNCC	1 cut(s)	309
NmeAIII	GCCGAG	1 cut(s)	635
NruI	TCGCGA	1 cut(s)	83
NspI	RCATGY	2 cut(s)	181, 339
OliI	CACNNNNGTG	1 cut(s)	838
PaeI	GCATGC	2 cut(s)	181, 339
PfeI	GAWTC	1 cut(s)	871
PfoI	TCCNGGA	1 cut(s)	787
PkrI	GCNGC	7 cut(s)	46, 49, 52, 319, 492, 673, 676
PleI	GAGTC	1 cut(s)	133
PpsI	GAGTC	1 cut(s)	133
Ppu21I	YACGTR	1 cut(s)	483
PsiI	TTATAA	1 cut(s)	504
Psp6I	CCWGG	4 cut(s)	66, 426, 526, 787
PspGI	CCWGG	4 cut(s)	66, 426, 526, 787
PspN4I	GGNNCC	1 cut(s)	309
PspPI	GGNCC	2 cut(s)	250, 363
PsuI	RGATCY	3 cut(s)	434, 773, 812
PvuII	CAGCTG	1 cut(s)	47
RruI	TCGCGA	1 cut(s)	83
RsaI	GTAC	3 cut(s)	142, 1104, 1145
RsaNI	GTAC	3 cut(s)	141, 1103, 1144
RseI	CAYNNNNRTG	2 cut(s)	485, 838
SalI	GTCGAC	1 cut(s)	882
SaqAI	TTAA	4 cut(s)	294, 369, 380, 1220
SatI	GCNGC	7 cut(s)	45, 48, 51, 318, 491, 672, 675
Sau96I	GGNCC	2 cut(s)	250, 363
SchI	GAGTC	1 cut(s)	134
ScrFI	CCNGG	5 cut(s)	68, 428, 444, 528, 789
SduI	GDGCHC	1 cut(s)	577
SfaNI	GCATC	2 cut(s)	106, 792
SinI	GGWCC	1 cut(s)	363
SmiMI	CAYNNNNRTG	2 cut(s)	485, 838
SmlI	CTYRAG	2 cut(s)	686, 968
SmoI	CTYRAG	2 cut(s)	686, 968
SphI	GCATGC	2 cut(s)	181, 339
SsiI	CCGC	1 cut(s)	51
SspMI	CTAG	3 cut(s)	224, 810, 939
StyD4I	CCNGG	5 cut(s)	66, 426, 442, 526, 787
StyI	CCWWGG	1 cut(s)	1087
TaaI	ACNGT	3 cut(s)	96, 288, 1143
TaiI	ACGT	1 cut(s)	485
TaqI	TCGA	1 cut(s)	883
TatI	WGTACW	3 cut(s)	140, 1102, 1143
TauI	GCSGC	1 cut(s)	53
TfiI	GAWTC	1 cut(s)	871
Tru1I	TTAA	4 cut(s)	294, 369, 380, 1220
Tru9I	TTAA	4 cut(s)	294, 369, 380, 1220
TscAI	CASTG	3 cut(s)	143, 318, 582
TseI	GCWGC	6 cut(s)	44, 47, 317, 490, 671, 674
TspDTI	ATGAA	4 cut(s)	17, 46, 218, 486
TspRI	CASTG	3 cut(s)	143, 318, 582
VpaK11BI	GGWCC	1 cut(s)	363
XagI	CCTNNNNNAGG	2 cut(s)	689, 1031
XapI	RAATTY	3 cut(s)	7, 391, 1188
XceI	RCATGY	2 cut(s)	181, 339
XmiI	GTMKAC	2 cut(s)	883, 1138
XspI	CTAG	3 cut(s)	224, 810, 939

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.