Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0005323

Physical Location & Seq

Genomic Coordinates Forward (+)

16954906 .. 16955849

Gene Structure 944 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g13380.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGTCGTCAACACTTAGAATTATTCTTTTGTCACCTTTTTTTTTTTCAGGAAAAGGCCTAGGTCGGCTGATTGATAAAAACCAGGTGCCAGTGGCAGCAGTTGTAATTATGGCATGCAATCGTGCTGATTATCTGGAAAGGACCGTTAAGTCTGTTTTAAAATATCAGAGTTCCGTTGCATCAAAATTTCCTCTATTTGTCTCCCAGGACGGATCGCATCCAGCTGTCAAACAAAAGGCTTTGAGCTACGATCAGCTTACCTATATGCAACACACCAGGATAGCTATCAACTCTGACTTGAATGAATTGCAGCATTTGGATTATGAACCAGTTCATGCTGAAAGACCTGGGGAGTTGATTGCATACTACAAAATTGCACGTCATTACAAATGGGCACTGGATGGATTGTTCTACAAGCATAACTTCAACCGCGTAATCATACTTGAAGATGATATGGAAATTTCTCCCGATTTTTTCGATTATTTTGAGGCTGCAGCAACTCTTCTTGACAAGGATAAGTATGTCTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003827 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006464 GO:0006486 GO:0006491 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0008194 GO:0008375 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009628 GO:0009987 GO:0012505 GO:0016262 GO:0016740 GO:0016757 GO:0016758 GO:0019538 GO:0031410 GO:0031982 GO:0031984 GO:0034645 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0070085 GO:0071704 GO:0097708 GO:0098791 GO:0140096 GO:0140103 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 map00510 map00513 map01100

Pfam Domains

Protein Families

GNT-I

Protein Analysis

177

Amino Acids

20.28

Weight (kDa)

6.58

Isoelectric Point (pI)

47.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005323)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38240 AT4G38240 AT4G38240
fragaria_vesca	FvH4_2g16770 FvH4_2g16770 FvH4_2g16770 FvH4_2g16770 FvH4_2g16770 FvH4_2g16770
malus_domestica	MD05G1138700.v1.1 MD10G1141600.v1.1
prunus_persica	Prupe.8G179800_v2.0.a1 Prupe.8G179800_v2.0.a1 Prupe.8G179800_v2.0.a1 Prupe.8G179800_v2.0.a1 Prupe.8G179800_v2.0.a1 Prupe.8G179800_v2.0.a1 Prupe.8G179800_v2.0.a1
pyrus_communis	pycom05g13380 pycom10g12120
rosa_chinensis	RchiOBHm_Chr6g0280891
rosa_laevigata	RLG00000013022
rosa_roxburghii	Rroxscaffold_7G00187520
rosa_rugosa	Rorug06G0136000
rosa_samantha	Rh6AG248900 Rh6BG250800 Rh6CG251600 Rh6DG243300
rosa_wichuraiana	Rw6G021520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	148
AccB1I	GGYRCC	1 cut(s)	85
AccII	CGCG	1 cut(s)	432
AciI	CCGC	1 cut(s)	430
AclWI	GGATC	1 cut(s)	220
AcsI	RAATTY	2 cut(s)	185, 459
AgsI	TTSAA	3 cut(s)	301, 427, 446
AjiI	CACGTC	1 cut(s)	380
AjnI	CCWGG	4 cut(s)	81, 204, 275, 346
AloI	GAACNNNNNNTCC	2 cut(s)	392, 424
AluBI	AGCT	4 cut(s)	224, 246, 256, 284
AluI	AGCT	4 cut(s)	224, 246, 256, 284
Alw26I	GTCTC	1 cut(s)	205
AlwI	GGATC	1 cut(s)	220
AoxI	GGCC	1 cut(s)	55
ApeKI	GCWGC	4 cut(s)	95, 310, 491, 494
ApoI	RAATTY	2 cut(s)	185, 459
Asp700I	GAANNNNTTC	1 cut(s)	330
AspA2I	CCTAGG	1 cut(s)	58
AspS9I	GGNCC	1 cut(s)	141
AsuHPI	GGTGA	1 cut(s)	24
AvaII	GGWCC	1 cut(s)	141
AvrII	CCTAGG	1 cut(s)	58
BaeGI	GKGCMC	1 cut(s)	397
BanI	GGYRCC	1 cut(s)	85
BbsI	GAAGAC	1 cut(s)	517
BbvI	GCAGC	4 cut(s)	107, 322, 478, 506
BccI	CCATC	1 cut(s)	395
BciT130I	CCWGG	4 cut(s)	83, 206, 277, 348
BcoDI	GTCTC	1 cut(s)	205
BfaI	CTAG	2 cut(s)	59, 529
BfmI	CTRYAG	1 cut(s)	492
BisI	GCNGC	4 cut(s)	96, 311, 492, 495
BlnI	CCTAGG	1 cut(s)	58
BlsI	GCNGC	4 cut(s)	97, 312, 493, 496
Bme1390I	CCNGG	4 cut(s)	83, 206, 277, 348
Bme18I	GGWCC	1 cut(s)	141
BmgBI	CACGTC	1 cut(s)	380
BmgT120I	GGNCC	1 cut(s)	141
BmiI	GGNNCC	1 cut(s)	87
BmrFI	CCNGG	4 cut(s)	83, 206, 277, 348
BmsI	GCATC	2 cut(s)	188, 226
BpiI	GAAGAC	1 cut(s)	517
BsaBI	GATNNNNATC	1 cut(s)	284
BsaJI	CCNNGG	3 cut(s)	58, 204, 347
Bse1I	ACTGG	3 cut(s)	89, 329, 402
Bse8I	GATNNNNATC	1 cut(s)	284
BseBI	CCWGG	4 cut(s)	83, 206, 277, 348
BseDI	CCNNGG	3 cut(s)	58, 204, 347
BseGI	GGATG	2 cut(s)	217, 406
BseJI	GATNNNNATC	1 cut(s)	284
BseNI	ACTGG	3 cut(s)	89, 329, 402
BseSI	GKGCMC	1 cut(s)	397
BseXI	GCAGC	4 cut(s)	107, 322, 478, 506
Bsh1236I	CGCG	1 cut(s)	432
BshFI	GGCC	1 cut(s)	57
BshNI	GGYRCC	1 cut(s)	85
BsmAI	GTCTC	1 cut(s)	205
BsnI	GGCC	1 cut(s)	57
Bsp1286I	GDGCHC	1 cut(s)	397
Bsp143I	GATC	2 cut(s)	212, 250
BspACI	CCGC	1 cut(s)	430
BspANI	GGCC	1 cut(s)	57
BspFNI	CGCG	1 cut(s)	432
BspLI	GGNNCC	1 cut(s)	87
BspMAI	CTGCAG	1 cut(s)	496
BspPI	GGATC	1 cut(s)	220
BspT107I	GGYRCC	1 cut(s)	85
BsrI	ACTGG	3 cut(s)	89, 329, 402
BssECI	CCNNGG	3 cut(s)	58, 204, 347
BssMI	GATC	2 cut(s)	212, 250
BssT1I	CCWWGG	1 cut(s)	58
Bst2UI	CCWGG	4 cut(s)	83, 206, 277, 348
Bst4CI	ACNGT	1 cut(s)	145
Bst6I	CTCTTC	1 cut(s)	507
BstC8I	GCNNGC	1 cut(s)	115
BstDEI	CTNAG	1 cut(s)	14
BstF5I	GGATG	2 cut(s)	217, 406
BstFNI	CGCG	1 cut(s)	432
BstKTI	GATC	2 cut(s)	215, 253
BstMAI	GTCTC	1 cut(s)	205
BstMBI	GATC	2 cut(s)	212, 250
BstNI	CCWGG	4 cut(s)	83, 206, 277, 348
BstNSI	RCATGY	1 cut(s)	117
BstSCI	CCNGG	4 cut(s)	81, 204, 275, 346
BstSFI	CTRYAG	1 cut(s)	492
BstSLI	GKGCMC	1 cut(s)	397
BstUI	CGCG	1 cut(s)	432
BstV1I	GCAGC	4 cut(s)	107, 322, 478, 506
BstV2I	GAAGAC	1 cut(s)	517
BsuRI	GGCC	1 cut(s)	57
BtrI	CACGTC	1 cut(s)	380
BtsCI	GGATG	2 cut(s)	217, 406
BtsIMutI	CAGTG	2 cut(s)	96, 395
Cac8I	GCNNGC	1 cut(s)	115
Cfr13I	GGNCC	1 cut(s)	141
CsiI	ACCWGGT	1 cut(s)	81
CviAII	CATG	2 cut(s)	114, 335
CviJI	RGCY	8 cut(s)	57, 67, 224, 239, 246, 256, 284, 491
CviKI_1	RGCY	8 cut(s)	57, 67, 224, 239, 246, 256, 284, 491
DdeI	CTNAG	1 cut(s)	14
DpnI	GATC	2 cut(s)	214, 252
DpnII	GATC	2 cut(s)	212, 250
DraI	TTTAAA	1 cut(s)	159
DrdI	GACNNNNNNGTC	1 cut(s)	148
DseDI	GACNNNNNNGTC	1 cut(s)	148
Eam1104I	CTCTTC	1 cut(s)	507
EarI	CTCTTC	1 cut(s)	507
Eco130I	CCWWGG	1 cut(s)	58
Eco147I	AGGCCT	1 cut(s)	57
Eco47I	GGWCC	1 cut(s)	141
EcoRII	CCWGG	4 cut(s)	81, 204, 275, 346
EcoT14I	CCWWGG	1 cut(s)	58
ErhI	CCWWGG	1 cut(s)	58
FaeI	CATG	2 cut(s)	117, 338
FalI	AAGNNNNNCTT	3 cut(s)	407, 439, 509
FatI	CATG	2 cut(s)	113, 334
Fnu4HI	GCNGC	4 cut(s)	96, 311, 492, 495
FokI	GGATG	2 cut(s)	204, 413
Fsp4HI	GCNGC	4 cut(s)	96, 311, 492, 495
FspBI	CTAG	2 cut(s)	59, 529
GluI	GCNGC	4 cut(s)	96, 311, 492, 495
HaeIII	GGCC	1 cut(s)	57
Hin1II	CATG	2 cut(s)	117, 338
HincII	GTYRAC	1 cut(s)	9
HindII	GTYRAC	1 cut(s)	9
HphI	GGTGA	1 cut(s)	24
Hpy166II	GTNNAC	1 cut(s)	9
Hpy188I	TCNGA	2 cut(s)	168, 295
Hpy188III	TCNNGA	4 cut(s)	48, 134, 467, 506
Hpy8I	GTNNAC	1 cut(s)	9
HpyCH4III	ACNGT	1 cut(s)	145
HpyCH4IV	ACGT	1 cut(s)	379
HpyCH4V	TGCA	7 cut(s)	117, 179, 268, 310, 362, 377, 494
HpyF3I	CTNAG	1 cut(s)	14
HpySE526I	ACGT	1 cut(s)	379
Hsp92II	CATG	2 cut(s)	117, 338
Kzo9I	GATC	2 cut(s)	212, 250
Lsp1109I	GCAGC	4 cut(s)	107, 322, 478, 506
LweI	GCATC	2 cut(s)	188, 226
MabI	ACCWGGT	1 cut(s)	81
MaeI	CTAG	2 cut(s)	59, 529
MaeII	ACGT	1 cut(s)	379
MaeIII	GTNAC	1 cut(s)	30
MalI	GATC	2 cut(s)	214, 252
MboI	GATC	2 cut(s)	212, 250
MboII	GAAGA	3 cut(s)	458, 494, 517
MhlI	GDGCHC	1 cut(s)	397
MluCI	AATT	6 cut(s)	18, 105, 185, 305, 372, 459
MnlI	CCTC	2 cut(s)	201, 481
MroXI	GAANNNNTTC	1 cut(s)	330
MseI	TTAA	2 cut(s)	147, 158
MspA1I	CMGCKG	1 cut(s)	224
MspR9I	CCNGG	4 cut(s)	83, 206, 277, 348
MvaI	CCWGG	4 cut(s)	83, 206, 277, 348
MvnI	CGCG	1 cut(s)	432
NdeII	GATC	2 cut(s)	212, 250
NlaIII	CATG	2 cut(s)	117, 338
NlaIV	GGNNCC	1 cut(s)	87
NmuCI	GTSAC	1 cut(s)	30
NspI	RCATGY	1 cut(s)	117
PaeI	GCATGC	1 cut(s)	117
PceI	AGGCCT	1 cut(s)	57
PdmI	GAANNNNTTC	1 cut(s)	330
PkrI	GCNGC	4 cut(s)	97, 312, 493, 496
Psp6I	CCWGG	4 cut(s)	81, 204, 275, 346
PspGI	CCWGG	4 cut(s)	81, 204, 275, 346
PspN4I	GGNNCC	1 cut(s)	87
PspPI	GGNCC	1 cut(s)	141
PstI	CTGCAG	1 cut(s)	496
PvuII	CAGCTG	1 cut(s)	224
SaqAI	TTAA	2 cut(s)	147, 158
SatI	GCNGC	4 cut(s)	96, 311, 492, 495
Sau3AI	GATC	2 cut(s)	212, 250
Sau96I	GGNCC	1 cut(s)	141
ScrFI	CCNGG	4 cut(s)	83, 206, 277, 348
SduI	GDGCHC	1 cut(s)	397
SexAI	ACCWGGT	1 cut(s)	81
SfaNI	GCATC	2 cut(s)	188, 226
SfcI	CTRYAG	1 cut(s)	492
SinI	GGWCC	1 cut(s)	141
SphI	GCATGC	1 cut(s)	117
Sse9I	AATT	6 cut(s)	18, 105, 185, 305, 372, 459
SseBI	AGGCCT	1 cut(s)	57
SsiI	CCGC	1 cut(s)	430
SspMI	CTAG	2 cut(s)	59, 529
StuI	AGGCCT	1 cut(s)	57
StyD4I	CCNGG	4 cut(s)	81, 204, 275, 346
StyI	CCWWGG	1 cut(s)	58
TaaI	ACNGT	1 cut(s)	145
TaiI	ACGT	1 cut(s)	382
TaqI	TCGA	1 cut(s)	477
TasI	AATT	6 cut(s)	18, 105, 185, 305, 372, 459
Tru1I	TTAA	2 cut(s)	147, 158
Tru9I	TTAA	2 cut(s)	147, 158
TscAI	CASTG	2 cut(s)	96, 402
TseFI	GTSAC	1 cut(s)	30
TseI	GCWGC	4 cut(s)	95, 310, 491, 494
Tsp45I	GTSAC	1 cut(s)	30
TspDTI	ATGAA	3 cut(s)	318, 323, 339
TspGWI	ACGGA	2 cut(s)	163, 225
TspRI	CASTG	2 cut(s)	96, 402
VpaK11BI	GGWCC	1 cut(s)	141
XapI	RAATTY	2 cut(s)	185, 459
XceI	RCATGY	1 cut(s)	117
XmaJI	CCTAGG	1 cut(s)	58
XmnI	GAANNNNTTC	1 cut(s)	330
XspI	CTAG	2 cut(s)	59, 529

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.