Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0005323

Physical Location & Seq

Genomic Coordinates Forward (+)

15720821 .. 15723842

Gene Structure 3022 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g12120.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGAGATCGGAAGCTCCCGTAATTTGTTTTCGCACCAAATTTAAACAAAATGAAGAAAATTCTCTGCGATTTTCGGTTCCTCCTGTTTCTTGCAGCGGCGGCGTTCATCTATATTCAGATAGAGACGGATCACATCCAGCTGTCAAACAAAAGGCTTTGAGCTATGATCAGCTTACCTATATGCAACATTTGGATTATGAACCAGTTCATGCTGAAAGACCTGGGGAGTTGATTGCATACTACAAAATTGCACGTCATTACAAATGGGCATTGGATGGATTGTTCTACAAGCATAAGTTCAGCCGCGTAATCATACTTGAAGATGATATGGAAATTGCTCCTGATTTTTTCGATTATTTTGAGGCTGCAGCAGCTCTTCTTGACAAGGATAAGTCTATCATGGCCGTTTCCTCGTGGAATGACAATGGGCAAAAGCAGTTTGTGCATGATCCTAGTGAGTTCTCATTAATTTTTCAAGTTAATCTTCCTAAGATTGGAATAAAGCATAATACAACTTTTATTTTTTCAGGACCAATTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003827 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006464 GO:0006486 GO:0006491 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0008194 GO:0008375 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009628 GO:0009987 GO:0012505 GO:0016262 GO:0016740 GO:0016757 GO:0016758 GO:0019538 GO:0031410 GO:0031982 GO:0031984 GO:0034645 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0070085 GO:0071704 GO:0097708 GO:0098791 GO:0140096 GO:0140103 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 map00510 map00513 map01100

Pfam Domains

Protein Families

GNT-I

Protein Analysis

181

Amino Acids

20.68

Weight (kDa)

6.23

Isoelectric Point (pI)

47.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005323)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38240 AT4G38240 AT4G38240
fragaria_vesca	FvH4_2g16770 FvH4_2g16770 FvH4_2g16770 FvH4_2g16770 FvH4_2g16770 FvH4_2g16770
malus_domestica	MD05G1138700.v1.1 MD10G1141600.v1.1
prunus_persica	Prupe.8G179800_v2.0.a1 Prupe.8G179800_v2.0.a1 Prupe.8G179800_v2.0.a1 Prupe.8G179800_v2.0.a1 Prupe.8G179800_v2.0.a1 Prupe.8G179800_v2.0.a1 Prupe.8G179800_v2.0.a1
pyrus_communis	pycom05g13380 pycom10g12120
rosa_chinensis	RchiOBHm_Chr6g0280891
rosa_laevigata	RLG00000013022
rosa_roxburghii	Rroxscaffold_7G00187520
rosa_rugosa	Rorug06G0136000
rosa_samantha	Rh6AG248900 Rh6BG250800 Rh6CG251600 Rh6DG243300
rosa_wichuraiana	Rw6G021520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	306
AciI	CCGC	3 cut(s)	96, 99, 304
AclWI	GGATC	2 cut(s)	136, 443
AcoI	YGGCCR	1 cut(s)	402
AcsI	RAATTY	2 cut(s)	38, 58
AfiI	CCNNNNNNNGG	1 cut(s)	494
AgsI	TTSAA	2 cut(s)	320, 476
AjiI	CACGTC	1 cut(s)	254
AjnI	CCWGG	1 cut(s)	220
AloI	GAACNNNNNNTCC	2 cut(s)	266, 298
AluBI	AGCT	5 cut(s)	14, 140, 162, 172, 374
AluI	AGCT	5 cut(s)	14, 140, 162, 172, 374
Alw26I	GTCTC	1 cut(s)	117
AlwI	GGATC	2 cut(s)	136, 443
AoxI	GGCC	1 cut(s)	402
ApeKI	GCWGC	4 cut(s)	93, 365, 368, 371
ApoI	RAATTY	2 cut(s)	38, 58
AseI	ATTAAT	1 cut(s)	467
Asp700I	GAANNNNTTC	1 cut(s)	204
AspS9I	GGNCC	1 cut(s)	530
AvaII	GGWCC	1 cut(s)	530
BauI	CACGAG	1 cut(s)	412
BbvI	GCAGC	4 cut(s)	105, 352, 380, 383
BccI	CCATC	1 cut(s)	269
BceAI	ACGGC	1 cut(s)	389
BciT130I	CCWGG	1 cut(s)	222
BclI	TGATCA	1 cut(s)	166
BcoDI	GTCTC	1 cut(s)	117
BfaI	CTAG	1 cut(s)	453
BfmI	CTRYAG	1 cut(s)	366
BisI	GCNGC	7 cut(s)	94, 97, 100, 304, 366, 369, 372
BlsI	GCNGC	7 cut(s)	95, 98, 101, 305, 367, 370, 373
Bme1390I	CCNGG	1 cut(s)	222
Bme18I	GGWCC	1 cut(s)	530
BmgBI	CACGTC	1 cut(s)	254
BmgT120I	GGNCC	1 cut(s)	530
BmiI	GGNNCC	1 cut(s)	78
BmrFI	CCNGG	1 cut(s)	222
BsaJI	CCNNGG	1 cut(s)	221
Bsc4I	CCNNNNNNNGG	1 cut(s)	494
Bse1I	ACTGG	1 cut(s)	203
BseBI	CCWGG	1 cut(s)	222
BseDI	CCNNGG	1 cut(s)	221
BseGI	GGATG	2 cut(s)	133, 280
BseLI	CCNNNNNNNGG	1 cut(s)	494
BseNI	ACTGG	1 cut(s)	203
BseXI	GCAGC	4 cut(s)	105, 352, 380, 383
Bsh1236I	CGCG	1 cut(s)	306
BshFI	GGCC	1 cut(s)	404
BslI	CCNNNNNNNGG	1 cut(s)	494
BsmAI	GTCTC	1 cut(s)	117
BsmBI	CGTCTC	1 cut(s)	117
BsnI	GGCC	1 cut(s)	404
Bsp143I	GATC	4 cut(s)	5, 128, 166, 448
BspACI	CCGC	3 cut(s)	96, 99, 304
BspANI	GGCC	1 cut(s)	404
BspFNI	CGCG	1 cut(s)	306
BspLI	GGNNCC	1 cut(s)	78
BspMAI	CTGCAG	1 cut(s)	370
BspPI	GGATC	2 cut(s)	136, 443
BspQI	GCTCTTC	1 cut(s)	381
BsrI	ACTGG	1 cut(s)	203
BssECI	CCNNGG	1 cut(s)	221
BssMI	GATC	4 cut(s)	5, 128, 166, 448
BssSI	CACGAG	1 cut(s)	412
Bst2BI	CACGAG	1 cut(s)	412
Bst2UI	CCWGG	1 cut(s)	222
Bst6I	CTCTTC	1 cut(s)	381
BstAPI	GCANNNNNTGC	1 cut(s)	442
BstDEI	CTNAG	1 cut(s)	489
BstF5I	GGATG	2 cut(s)	133, 280
BstFNI	CGCG	1 cut(s)	306
BstKTI	GATC	4 cut(s)	8, 131, 169, 451
BstMAI	GTCTC	1 cut(s)	117
BstMBI	GATC	4 cut(s)	5, 128, 166, 448
BstMWI	GCNNNNNNNGC	3 cut(s)	99, 371, 442
BstNI	CCWGG	1 cut(s)	222
BstSCI	CCNGG	1 cut(s)	220
BstSFI	CTRYAG	1 cut(s)	366
BstUI	CGCG	1 cut(s)	306
BstV1I	GCAGC	4 cut(s)	105, 352, 380, 383
BsuRI	GGCC	1 cut(s)	404
BtrI	CACGTC	1 cut(s)	254
BtsCI	GGATG	2 cut(s)	133, 280
Cfr13I	GGNCC	1 cut(s)	530
CviAII	CATG	3 cut(s)	209, 400, 446
CviJI	RGCY	9 cut(s)	14, 140, 155, 162, 172, 303, 365, 374, 404
CviKI_1	RGCY	9 cut(s)	14, 140, 155, 162, 172, 303, 365, 374, 404
DdeI	CTNAG	1 cut(s)	489
DpnI	GATC	4 cut(s)	7, 130, 168, 450
DpnII	GATC	4 cut(s)	5, 128, 166, 448
DraI	TTTAAA	1 cut(s)	43
EaeI	YGGCCR	1 cut(s)	402
Eam1104I	CTCTTC	1 cut(s)	381
EarI	CTCTTC	1 cut(s)	381
Eco47I	GGWCC	1 cut(s)	530
EcoRII	CCWGG	1 cut(s)	220
Esp3I	CGTCTC	1 cut(s)	117
FaeI	CATG	3 cut(s)	212, 403, 449
FalI	AAGNNNNNCTT	2 cut(s)	468, 500
FatI	CATG	3 cut(s)	208, 399, 445
FbaI	TGATCA	1 cut(s)	166
Fnu4HI	GCNGC	7 cut(s)	94, 97, 100, 304, 366, 369, 372
FokI	GGATG	2 cut(s)	120, 287
Fsp4HI	GCNGC	7 cut(s)	94, 97, 100, 304, 366, 369, 372
FspBI	CTAG	1 cut(s)	453
GluI	GCNGC	7 cut(s)	94, 97, 100, 304, 366, 369, 372
HaeIII	GGCC	1 cut(s)	404
Hin1II	CATG	3 cut(s)	212, 403, 449
Hpy188I	TCNGA	2 cut(s)	10, 118
Hpy188III	TCNNGA	3 cut(s)	341, 380, 528
HpyCH4IV	ACGT	1 cut(s)	253
HpyCH4V	TGCA	7 cut(s)	93, 184, 236, 251, 368, 445, 539
HpyF10VI	GCNNNNNNNGC	3 cut(s)	99, 371, 442
HpyF3I	CTNAG	1 cut(s)	489
HpySE526I	ACGT	1 cut(s)	253
Hsp92II	CATG	3 cut(s)	212, 403, 449
Ksp22I	TGATCA	1 cut(s)	166
Kzo9I	GATC	4 cut(s)	5, 128, 166, 448
LguI	GCTCTTC	1 cut(s)	381
LmnI	GCTCC	2 cut(s)	19, 343
LpnPI	CCDG	7 cut(s)	96, 150, 207, 216, 234, 354, 513
Lsp1109I	GCAGC	4 cut(s)	105, 352, 380, 383
MaeI	CTAG	1 cut(s)	453
MaeII	ACGT	1 cut(s)	253
MalI	GATC	4 cut(s)	7, 130, 168, 450
MboI	GATC	4 cut(s)	5, 128, 166, 448
MboII	GAAGA	4 cut(s)	65, 332, 368, 476
MfeI	CAATTG	1 cut(s)	534
MluCI	AATT	7 cut(s)	21, 38, 58, 246, 333, 468, 534
MnlI	CCTC	3 cut(s)	90, 355, 421
MroXI	GAANNNNTTC	1 cut(s)	204
MseI	TTAA	3 cut(s)	42, 467, 480
MspA1I	CMGCKG	2 cut(s)	96, 140
MspR9I	CCNGG	1 cut(s)	222
MunI	CAATTG	1 cut(s)	534
MvaI	CCWGG	1 cut(s)	222
MvnI	CGCG	1 cut(s)	306
MwoI	GCNNNNNNNGC	3 cut(s)	99, 371, 442
NdeII	GATC	4 cut(s)	5, 128, 166, 448
NlaIII	CATG	3 cut(s)	212, 403, 449
NlaIV	GGNNCC	1 cut(s)	78
PciSI	GCTCTTC	1 cut(s)	381
PdmI	GAANNNNTTC	1 cut(s)	204
PkrI	GCNGC	7 cut(s)	95, 98, 101, 305, 367, 370, 373
PshBI	ATTAAT	1 cut(s)	467
Psp6I	CCWGG	1 cut(s)	220
PspGI	CCWGG	1 cut(s)	220
PspN4I	GGNNCC	1 cut(s)	78
PspPI	GGNCC	1 cut(s)	530
PstI	CTGCAG	1 cut(s)	370
PvuII	CAGCTG	1 cut(s)	140
SapI	GCTCTTC	1 cut(s)	381
SaqAI	TTAA	3 cut(s)	42, 467, 480
SatI	GCNGC	7 cut(s)	94, 97, 100, 304, 366, 369, 372
Sau3AI	GATC	4 cut(s)	5, 128, 166, 448
Sau96I	GGNCC	1 cut(s)	530
ScrFI	CCNGG	1 cut(s)	222
SetI	ASST	8 cut(s)	16, 142, 164, 174, 179, 223, 256, 376
SfcI	CTRYAG	1 cut(s)	366
SinI	GGWCC	1 cut(s)	530
Sse9I	AATT	7 cut(s)	21, 38, 58, 246, 333, 468, 534
SsiI	CCGC	3 cut(s)	96, 99, 304
SspMI	CTAG	1 cut(s)	453
StyD4I	CCNGG	1 cut(s)	220
TaiI	ACGT	1 cut(s)	256
TaqI	TCGA	1 cut(s)	351
TasI	AATT	7 cut(s)	21, 38, 58, 246, 333, 468, 534
TauI	GCSGC	3 cut(s)	99, 102, 306
Tru1I	TTAA	3 cut(s)	42, 467, 480
Tru9I	TTAA	3 cut(s)	42, 467, 480
TseI	GCWGC	4 cut(s)	93, 365, 368, 371
TspDTI	ATGAA	4 cut(s)	66, 95, 197, 213
TspGWI	ACGGA	1 cut(s)	141
VpaK11BI	GGWCC	1 cut(s)	530
VspI	ATTAAT	1 cut(s)	467
XapI	RAATTY	2 cut(s)	38, 58
XmnI	GAANNNNTTC	1 cut(s)	204
XspI	CTAG	1 cut(s)	453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.