MD10G1141600.v1.1

Alpha-1,3-mannosyl-glycoprotein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
Physical Location & Seq
Forward (+)
22748351 .. 22753860
5510 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1141600.v1.1.491

Sequence Viewer

Length: 1329 bp
ATGAAGAAAATTCTCTGTGATTTTCGGTTCCTCCTGTTTCTTGCAGCGGCGGCGTTCATCTATATTCAGATGCGGCTTTTCGCTACGCAATCGCAGTACGCTGATCGCCTCGCGGATGCGATAGAGTCAGAGAACCATTGTACATCTCAGTTGAGGACATTTATTGATCAAATAAGCTTGCAACAAGGACAAATTGTTTCCCTAGACGAAGAAAAGCAACGGCTAGAGCAAGAGTGTGGACAACTGAAGGTCCTAGTACAAGAACTTGAAAGGAAAGGCCTAGGTCGGCTGATTGACAAAAACCAGGTGCCAGTGGCAGCAGTTGTAATTATGGCATGCAATCGTGCTGATTATCTGGAAAGGACTGTGAAGTCTGTTTTAAAATATCAGAGTTCTGTTGCCTCAAAGTTTCCTCTATTTGTCTCCCAGGACGGATCGCATCCAGCTGTCAAACAAAAGGCTTTGAGCTACGATCAGCTTACCTATATGCAACATTTGGATTATGAACCAGTTCATGCTGAAAGACCTGGGGAGTTGATTGCATACTACAAAATTGCGCGTCATTACAAATGGGCATTGGATGGATTGTTCTACAAGCATAAGTTCAGCCGCGTAATCATACTTGAAGATGATATGGAAATTGCTCCTGATTTTTTCGATTATTTTGAGGCTGCAGCAGCTCTTCTTGACAAGGATAAGTCTATCATGGCCGTTTCTTCGTGGAATGACAATGGGCAAAAACAGTTTGTGCATGATCCTAAAATACTTTATAGATCGGATTTCTTTCCTGGACTCGGGTGGATGCTGGCTAGATCTACATGGGATGAGCTATCACCAAAATGGCCAAAGGCATATCCTTATCCATATCCTCTAAATAATCATAAGGGTCGACAATTTATTCGGCCAGAAGTGTGCAGAACATATAATTTTGGAGAACATGGTTCTAGTCTGGGACAGTTTTTCAAACAATATCTTGAGCCAATCAAGCTGAATGATGTCCCGGTTGACTGGAAATCAATGGATTTGAGCTACCTGATGGAGGACAAGTATTTAAAACACTTTGCTGACATTGTGAAAAAAGCTAAACCTATCCATGGATCTGATCTTGTACTAAAGGCACGCAACATTGGTGGTGATGTTCGCATACAGTACAACGACCAGCCAGACTTCGAATACATTGCTGGCCAGTTTGGTATTTTCGAAGAGTGGAAGGATGGTGTACCACGGACAGCATATAAAGGAATAGTTGTTTTCCGGTACCATATCCCACAACGTATATTCCTTGTTGGTCCAGATTCTCTCAAGCAGCTCGGAGTTAATGATTCTTGA

Protein Analysis

443

Amino Acids

51.22

Weight (kDa)

7.19

Isoelectric Point (pI)

39.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GNT-I PF03071 15 - 439 2.3e-179 GNT-I family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 370
Acc65I GGTACC 1 cut(s) 1257
AccB1I GGYRCC 2 cut(s) 307, 1257
AccI GTMKAC 1 cut(s) 889
AccII CGCG 3 cut(s) 113, 559, 612
AciI CCGC 5 cut(s) 47, 50, 73, 113, 610
AclWI GGATC 3 cut(s) 442, 749, 1105
AcoI YGGCCR 4 cut(s) 708, 842, 902, 1183
AcsI RAATTY 1 cut(s) 9
AcuI CTGAAG 1 cut(s) 266
AfaI GTAC 7 cut(s) 98, 142, 258, 1110, 1151, 1221, 1259
AfiI CCNNNNNNNGG 3 cut(s) 794, 1039, 1094
AgsI TTSAA 3 cut(s) 269, 626, 964
AjnI CCWGG 4 cut(s) 303, 426, 526, 787
AloI GAACNNNNNNTCC 2 cut(s) 572, 604
Alw26I GTCTC 1 cut(s) 427
AlwI GGATC 3 cut(s) 442, 749, 1105
Ama87I CYCGRG 1 cut(s) 794
AoxI GGCC 5 cut(s) 277, 708, 842, 902, 1183
ApeKI GCWGC 6 cut(s) 44, 317, 671, 674, 677, 1306
ApoI RAATTY 1 cut(s) 9
ArsI GACNNNNNNTTYG 2 cut(s) 882, 914
Asp700I GAANNNNTTC 1 cut(s) 510
Asp718I GGTACC 1 cut(s) 1257
AspA2I CCTAGG 1 cut(s) 280
AspLEI GCGC 1 cut(s) 559
AspS9I GGNCC 2 cut(s) 250, 1289
AsuC2I CCSGG 1 cut(s) 1001
AsuHPI GGTGA 2 cut(s) 825, 1145
AsuII TTCGAA 2 cut(s) 1170, 1200
AvaI CYCGRG 1 cut(s) 794
AvaII GGWCC 2 cut(s) 250, 1289
AvrII CCTAGG 1 cut(s) 280
BalI TGGCCA 2 cut(s) 844, 1185
BanI GGYRCC 2 cut(s) 307, 1257
BbvI GCAGC 6 cut(s) 56, 329, 658, 686, 689, 1318
BccI CCATC 3 cut(s) 575, 1030, 1208
BceAI ACGGC 2 cut(s) 236, 695
BcgI CGANNNNNNTGC 2 cut(s) 1160, 1194
BciT130I CCWGG 4 cut(s) 305, 428, 528, 789
BclI TGATCA 1 cut(s) 166
BcnI CCSGG 1 cut(s) 1001
BcoDI GTCTC 1 cut(s) 427
BfaI CTAG 6 cut(s) 203, 224, 254, 281, 810, 945
BfmI CTRYAG 1 cut(s) 672
BglII AGATCT 1 cut(s) 812
BlnI CCTAGG 1 cut(s) 280
Bme1390I CCNGG 5 cut(s) 305, 428, 528, 789, 1001
Bme18I GGWCC 2 cut(s) 250, 1289
BmeT110I CYCGRG 1 cut(s) 794
BmgT120I GGNCC 2 cut(s) 250, 1289
BmiI GGNNCC 3 cut(s) 29, 309, 1259
BmrFI CCNGG 5 cut(s) 305, 428, 528, 789, 1001
BmsI GCATC 4 cut(s) 60, 106, 448, 792
Bpu14I TTCGAA 2 cut(s) 1170, 1200
BpuEI CTTGAG 2 cut(s) 995, 1286
BpuMI CCSGG 1 cut(s) 1001
BsaJI CCNNGG 5 cut(s) 280, 426, 527, 1093, 1223
BsaWI WCCGGW 1 cut(s) 1254
BsaXI ACNNNNNCTCC 2 cut(s) 1031, 1061
Bsc4I CCNNNNNNNGG 3 cut(s) 794, 1039, 1094
Bse1I ACTGG 4 cut(s) 311, 509, 1013, 1186
Bse3DI GCAATG 1 cut(s) 1176
BseBI CCWGG 4 cut(s) 305, 428, 528, 789
BseDI CCNNGG 5 cut(s) 280, 426, 527, 1093, 1223
BseGI GGATG 6 cut(s) 121, 439, 586, 807, 829, 1219
BseLI CCNNNNNNNGG 3 cut(s) 794, 1039, 1094
BseMI GCAATG 1 cut(s) 1176
BseMII CTCAG 1 cut(s) 161
BseNI ACTGG 4 cut(s) 311, 509, 1013, 1186
BseXI GCAGC 6 cut(s) 56, 329, 658, 686, 689, 1318
BsgI GTGCAG 1 cut(s) 934
Bsh1236I CGCG 3 cut(s) 113, 559, 612
BshFI GGCC 5 cut(s) 279, 710, 844, 904, 1185
BshNI GGYRCC 2 cut(s) 307, 1257
BsiHKCI CYCGRG 1 cut(s) 794
BsiSI CCGG 2 cut(s) 1001, 1255
BslFI GGGAC 2 cut(s) 966, 983
BslI CCNNNNNNNGG 3 cut(s) 794, 1039, 1094
BsmAI GTCTC 1 cut(s) 427
BsmFI GGGAC 2 cut(s) 966, 983
BsnI GGCC 5 cut(s) 279, 710, 844, 904, 1185
BsoBI CYCGRG 1 cut(s) 794
Bsp119I TTCGAA 2 cut(s) 1170, 1200
Bsp1407I TGTACA 1 cut(s) 140
Bsp143I GATC 9 cut(s) 103, 166, 434, 472, 754, 773, 812, 1097, 1102
Bsp19I CCATGG 1 cut(s) 1093
BspACI CCGC 5 cut(s) 47, 50, 73, 113, 610
BspANI GGCC 5 cut(s) 279, 710, 844, 904, 1185
BspCNI CTCAG 1 cut(s) 160
BspFNI CGCG 3 cut(s) 113, 559, 612
BspLI GGNNCC 3 cut(s) 29, 309, 1259
BspMAI CTGCAG 1 cut(s) 676
BspPI GGATC 3 cut(s) 442, 749, 1105
BspQI GCTCTTC 1 cut(s) 687
BspT104I TTCGAA 2 cut(s) 1170, 1200
BspT107I GGYRCC 2 cut(s) 307, 1257
BsrDI GCAATG 1 cut(s) 1176
BsrGI TGTACA 1 cut(s) 140
BsrI ACTGG 4 cut(s) 311, 509, 1013, 1186
BssECI CCNNGG 5 cut(s) 280, 426, 527, 1093, 1223
BssMI GATC 9 cut(s) 103, 166, 434, 472, 754, 773, 812, 1097, 1102
BssT1I CCWWGG 2 cut(s) 280, 1093
Bst2UI CCWGG 4 cut(s) 305, 428, 528, 789
Bst4CI ACNGT 4 cut(s) 367, 744, 957, 1149
Bst6I CTCTTC 2 cut(s) 687, 1197
BstAUI TGTACA 1 cut(s) 140
BstBI TTCGAA 2 cut(s) 1170, 1200
BstC8I GCNNGC 5 cut(s) 179, 337, 807, 1120, 1183
BstDEI CTNAG 1 cut(s) 147
BstDSI CCRYGG 2 cut(s) 1093, 1223
BstENI CCTNNNNNAGG 1 cut(s) 1037
BstF5I GGATG 6 cut(s) 121, 439, 586, 807, 829, 1219
BstFNI CGCG 3 cut(s) 113, 559, 612
BstHHI GCGC 1 cut(s) 559
BstKTI GATC 9 cut(s) 106, 169, 437, 475, 757, 776, 815, 1100, 1105
BstMAI GTCTC 1 cut(s) 427
BstMBI GATC 9 cut(s) 103, 166, 434, 472, 754, 773, 812, 1097, 1102
BstMWI GCNNNNNNNGC 3 cut(s) 50, 677, 985
BstNI CCWGG 4 cut(s) 305, 428, 528, 789
BstNSI RCATGY 1 cut(s) 339
BstSCI CCNGG 5 cut(s) 303, 426, 526, 787, 999
BstSFI CTRYAG 1 cut(s) 672
BstUI CGCG 3 cut(s) 113, 559, 612
BstV1I GCAGC 6 cut(s) 56, 329, 658, 686, 689, 1318
BstX2I RGATCY 2 cut(s) 812, 1097
BstYI RGATCY 2 cut(s) 812, 1097
BsuRI GGCC 5 cut(s) 279, 710, 844, 904, 1185
BtgI CCRYGG 2 cut(s) 1093, 1223
BtsCI GGATG 6 cut(s) 121, 439, 586, 807, 829, 1219
BtsIMutI CAGTG 1 cut(s) 318
Cac8I GCNNGC 5 cut(s) 179, 337, 807, 1120, 1183
CfoI GCGC 1 cut(s) 559
Cfr13I GGNCC 2 cut(s) 250, 1289
CseI GACGC 1 cut(s) 548
CsiI ACCWGGT 1 cut(s) 303
Csp6I GTAC 7 cut(s) 97, 141, 257, 1109, 1150, 1220, 1258
CspCI CAANNNNNGTGG 2 cut(s) 1111, 1146
CviAII CATG 7 cut(s) 336, 515, 706, 752, 819, 938, 1094
CviQI GTAC 7 cut(s) 97, 141, 257, 1109, 1150, 1220, 1258
DdeI CTNAG 1 cut(s) 147
DpnI GATC 9 cut(s) 105, 168, 436, 474, 756, 775, 814, 1099, 1104
DpnII GATC 9 cut(s) 103, 166, 434, 472, 754, 773, 812, 1097, 1102
DraI TTTAAA 2 cut(s) 381, 1053
DrdI GACNNNNNNGTC 1 cut(s) 370
DseDI GACNNNNNNGTC 1 cut(s) 370
EaeI YGGCCR 4 cut(s) 708, 842, 902, 1183
Eam1104I CTCTTC 2 cut(s) 687, 1197
EarI CTCTTC 2 cut(s) 687, 1197
Eco130I CCWWGG 2 cut(s) 280, 1093
Eco147I AGGCCT 1 cut(s) 279
Eco47I GGWCC 2 cut(s) 250, 1289
Eco57I CTGAAG 1 cut(s) 266
Eco88I CYCGRG 1 cut(s) 794
EcoNI CCTNNNNNAGG 1 cut(s) 1037
EcoO109I RGGNCCY 1 cut(s) 250
EcoRII CCWGG 4 cut(s) 303, 426, 526, 787
EcoT14I CCWWGG 2 cut(s) 280, 1093
ErhI CCWWGG 2 cut(s) 280, 1093
FaeI CATG 7 cut(s) 339, 518, 709, 755, 822, 941, 1097
FaqI GGGAC 2 cut(s) 966, 983
FatI CATG 7 cut(s) 335, 514, 705, 751, 818, 937, 1093
FbaI TGATCA 1 cut(s) 166
FblI GTMKAC 1 cut(s) 889
FokI GGATG 6 cut(s) 128, 426, 593, 814, 836, 1226
FspBI CTAG 6 cut(s) 203, 224, 254, 281, 810, 945
GlaI GCGC 1 cut(s) 558
HaeIII GGCC 5 cut(s) 279, 710, 844, 904, 1185
HapII CCGG 2 cut(s) 1001, 1255
HgaI GACGC 1 cut(s) 548
HhaI GCGC 1 cut(s) 559
Hin1II CATG 7 cut(s) 339, 518, 709, 755, 822, 941, 1097
Hin6I GCGC 1 cut(s) 557
HinP1I GCGC 1 cut(s) 557
HincII GTYRAC 2 cut(s) 890, 1006
HindII GTYRAC 2 cut(s) 890, 1006
HindIII AAGCTT 1 cut(s) 175
HinfI GANTC 4 cut(s) 125, 792, 1295, 1322
HpaII CCGG 2 cut(s) 1001, 1255
HphI GGTGA 2 cut(s) 825, 1145
Hpy166II GTNNAC 4 cut(s) 239, 890, 1006, 1220
Hpy188I TCNGA 6 cut(s) 69, 130, 390, 778, 1102, 1313
Hpy188III TCNNGA 6 cut(s) 356, 647, 686, 974, 1292, 1326
Hpy8I GTNNAC 4 cut(s) 239, 890, 1006, 1220
HpyAV CCTTC 2 cut(s) 241, 1204
HpyCH4III ACNGT 4 cut(s) 367, 744, 957, 1149
HpyCH4IV ACGT 1 cut(s) 1273
HpyCH4V TGCA 8 cut(s) 44, 181, 339, 490, 542, 674, 751, 915
HpyF10VI GCNNNNNNNGC 3 cut(s) 50, 677, 985
HpyF3I CTNAG 1 cut(s) 147
HpySE526I ACGT 1 cut(s) 1273
Hsp92II CATG 7 cut(s) 339, 518, 709, 755, 822, 941, 1097
HspAI GCGC 1 cut(s) 557
KpnI GGTACC 1 cut(s) 1261
Ksp22I TGATCA 1 cut(s) 166
Kzo9I GATC 9 cut(s) 103, 166, 434, 472, 754, 773, 812, 1097, 1102
LguI GCTCTTC 1 cut(s) 687
LmnI GCTCC 1 cut(s) 649
Lsp1109I GCAGC 6 cut(s) 56, 329, 658, 686, 689, 1318
LweI GCATC 4 cut(s) 60, 106, 448, 792
MabI ACCWGGT 1 cut(s) 303
MaeI CTAG 6 cut(s) 203, 224, 254, 281, 810, 945
MaeII ACGT 1 cut(s) 1273
MalI GATC 9 cut(s) 105, 168, 436, 474, 756, 775, 814, 1099, 1104
MboI GATC 9 cut(s) 103, 166, 434, 472, 754, 773, 812, 1097, 1102
MboII GAAGA 6 cut(s) 16, 221, 638, 674, 708, 1214
MflI RGATCY 2 cut(s) 812, 1097
MlsI TGGCCA 2 cut(s) 844, 1185
MluCI AATT 7 cut(s) 9, 192, 327, 552, 639, 893, 925
MluNI TGGCCA 2 cut(s) 844, 1185
MlyI GAGTC 2 cut(s) 134, 786
MnlI CCTC 8 cut(s) 41, 119, 147, 412, 423, 661, 879, 1033
Mox20I TGGCCA 2 cut(s) 844, 1185
MroXI GAANNNNTTC 1 cut(s) 510
MscI TGGCCA 2 cut(s) 844, 1185
MseI TTAA 3 cut(s) 380, 1052, 1317
MslI CAYNNNNRTG 1 cut(s) 838
Msp20I TGGCCA 2 cut(s) 844, 1185
MspA1I CMGCKG 2 cut(s) 47, 446
MspI CCGG 2 cut(s) 1001, 1255
MspR9I CCNGG 5 cut(s) 305, 428, 528, 789, 1001
MvaI CCWGG 4 cut(s) 305, 428, 528, 789
MvnI CGCG 3 cut(s) 113, 559, 612
MwoI GCNNNNNNNGC 3 cut(s) 50, 677, 985
NciI CCSGG 1 cut(s) 1001
NcoI CCATGG 1 cut(s) 1093
NdeII GATC 9 cut(s) 103, 166, 434, 472, 754, 773, 812, 1097, 1102
NlaIII CATG 7 cut(s) 339, 518, 709, 755, 822, 941, 1097
NlaIV GGNNCC 3 cut(s) 29, 309, 1259
NspI RCATGY 1 cut(s) 339
NspV TTCGAA 2 cut(s) 1170, 1200
PaeI GCATGC 1 cut(s) 339
PceI AGGCCT 1 cut(s) 279
PciSI GCTCTTC 1 cut(s) 687
PdmI GAANNNNTTC 1 cut(s) 510
PfeI GAWTC 2 cut(s) 1295, 1322
PfoI TCCNGGA 1 cut(s) 787
PleI GAGTC 2 cut(s) 133, 786
PpsI GAGTC 2 cut(s) 133, 786
PpuMI RGGWCCY 1 cut(s) 250
Psp5II RGGWCCY 1 cut(s) 250
Psp6I CCWGG 4 cut(s) 303, 426, 526, 787
PspGI CCWGG 4 cut(s) 303, 426, 526, 787
PspN4I GGNNCC 3 cut(s) 29, 309, 1259
PspPI GGNCC 2 cut(s) 250, 1289
PspPPI RGGWCCY 1 cut(s) 250
PstI CTGCAG 1 cut(s) 676
PsuI RGATCY 2 cut(s) 812, 1097
PvuII CAGCTG 1 cut(s) 446
RsaI GTAC 7 cut(s) 98, 142, 258, 1110, 1151, 1221, 1259
RsaNI GTAC 7 cut(s) 97, 141, 257, 1109, 1150, 1220, 1258
RseI CAYNNNNRTG 1 cut(s) 838
SalI GTCGAC 1 cut(s) 888
SapI GCTCTTC 1 cut(s) 687
SaqAI TTAA 3 cut(s) 380, 1052, 1317
Sau3AI GATC 9 cut(s) 103, 166, 434, 472, 754, 773, 812, 1097, 1102
Sau96I GGNCC 2 cut(s) 250, 1289
SchI GAGTC 2 cut(s) 134, 786
ScrFI CCNGG 5 cut(s) 305, 428, 528, 789, 1001
SexAI ACCWGGT 1 cut(s) 303
SfaNI GCATC 4 cut(s) 60, 106, 448, 792
SfcI CTRYAG 1 cut(s) 672
SfuI TTCGAA 2 cut(s) 1170, 1200
SinI GGWCC 2 cut(s) 250, 1289
SmiMI CAYNNNNRTG 1 cut(s) 838
SmlI CTYRAG 2 cut(s) 974, 1301
SmoI CTYRAG 2 cut(s) 974, 1301
SphI GCATGC 1 cut(s) 339
Sse9I AATT 7 cut(s) 9, 192, 327, 552, 639, 893, 925
SseBI AGGCCT 1 cut(s) 279
SsiI CCGC 5 cut(s) 47, 50, 73, 113, 610
SspMI CTAG 6 cut(s) 203, 224, 254, 281, 810, 945
StuI AGGCCT 1 cut(s) 279
StyD4I CCNGG 5 cut(s) 303, 426, 526, 787, 999
StyI CCWWGG 2 cut(s) 280, 1093
TaaI ACNGT 4 cut(s) 367, 744, 957, 1149
TaiI ACGT 1 cut(s) 1276
TaqI TCGA 4 cut(s) 657, 889, 1170, 1200
TasI AATT 7 cut(s) 9, 192, 327, 552, 639, 893, 925
TatI WGTACW 4 cut(s) 140, 256, 1108, 1149
TauI GCSGC 4 cut(s) 50, 53, 76, 612
TfiI GAWTC 2 cut(s) 1295, 1322
Tru1I TTAA 3 cut(s) 380, 1052, 1317
Tru9I TTAA 3 cut(s) 380, 1052, 1317
TscAI CASTG 1 cut(s) 318
TseI GCWGC 6 cut(s) 44, 317, 671, 674, 677, 1306
TspDTI ATGAA 4 cut(s) 17, 46, 503, 519
TspGWI ACGGA 2 cut(s) 447, 1240
TspRI CASTG 1 cut(s) 318
VpaK11BI GGWCC 2 cut(s) 250, 1289
XagI CCTNNNNNAGG 1 cut(s) 1037
XapI RAATTY 1 cut(s) 9
XceI RCATGY 1 cut(s) 339
XmaJI CCTAGG 1 cut(s) 280
XmiI GTMKAC 1 cut(s) 889
XmnI GAANNNNTTC 1 cut(s) 510
XspI CTAG 6 cut(s) 203, 224, 254, 281, 810, 945
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.