Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0005323

Physical Location & Seq

Genomic Coordinates Reverse (-)

26912191 .. 26918993

Gene Structure 6803 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00187520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGCTGATCGCCTCGCCGATGCGCTGGAATTTTGAGAACGAGAGTTGGCATTACTTTCCAGGATCAAAATCACAGGATTTTGGCTTGGTCAATGGTGTATTTGACCAAAAGTTGTCCTTAGAACAAAAGGAACAGCTAGAGCAAGAGTGTGGACAACTGAAGGCCCTTGTTCAAGAACTTGAAAGGAAAGGTGTTGAACGGTTGATGAACAAAGAACAGGTACCAGTGGCAGCAGTTGTAATTATGGCATGCAATCGTGCTGACTATCTGGAAAGGACCATTAAGTCTGTATTAAAATACCAGAATTCTGTTGCCACGAAGTTTCCTCTATTTGTCTCCCAGGATGGATCTGATCCAGGTGTCAAAGATATGGCTTTGAGCTATGAACAGCTCACGTATATGCAGCATTTGGATTATAAACCAGTTCAACCTGAAAGACCAGGGGAATTGATTGCATACTACAAAATTGCAAATCATTACAAATGGGCACTGGATGGATTGTTCTACAAGCATAAGTTCGGCCGAGTAATCATACTCGAAGATGATATGGAAATTGCTCCCGATTTTTTTGATTACTTTGAGGCTGCTGCCAATCTCCTTGATAAGGATAAGTCTATCATGGCTGTTTCCTCATGGAATGACAATGGACAAAAGCAGTTTGTGCATGATCCAGAAGCACTTTATAGATCTGATTTCTTTCCTGGACTTGGGTGGATGCTGACTAGATCTACATGGGATGAGCTATCACCGAAGTGGCCAAAGGCATATCCTTGTTACAAGAGAATCACAAAGGGTTCTAGTCTGGGGCAGTTTTTCAAACAATATCTTGAGCCAATCAAGCTGAATGATGTCCCTGTTGACTGGAAATCAATGGATTTGAGCTACCTGATGGAGGACAAGTATATAAAGCATTTTGCTGAGATTGTGAAAAAGGCTAAACCTGTCCGTGGAGCTGATCTTGTACTGAAGGCACGCAATATGGCTGGTGATGTTCGTATACAGTACAATGACCAGCGAGACTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003827 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006464 GO:0006486 GO:0006491 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0008194 GO:0008375 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009628 GO:0009987 GO:0012505 GO:0016262 GO:0016740 GO:0016757 GO:0016758 GO:0019538 GO:0031410 GO:0031982 GO:0031984 GO:0034645 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0070085 GO:0071704 GO:0097708 GO:0098791 GO:0140096 GO:0140103 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 map00510 map00513 map01100

Pfam Domains

Protein Families

GNT-I

Protein Analysis

341

Amino Acids

39.7

Weight (kDa)

6.13

Isoelectric Point (pI)

39.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GNT-I	PF03071	35 - 256	2.9e-95	GNT-I family
GNT-I	PF03071	263 - 341	8.7e-24	GNT-I family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005323)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38240 AT4G38240 AT4G38240
fragaria_vesca	FvH4_2g16770 FvH4_2g16770 FvH4_2g16770 FvH4_2g16770 FvH4_2g16770 FvH4_2g16770
malus_domestica	MD05G1138700.v1.1 MD10G1141600.v1.1
prunus_persica	Prupe.8G179800_v2.0.a1 Prupe.8G179800_v2.0.a1 Prupe.8G179800_v2.0.a1 Prupe.8G179800_v2.0.a1 Prupe.8G179800_v2.0.a1 Prupe.8G179800_v2.0.a1 Prupe.8G179800_v2.0.a1
pyrus_communis	pycom05g13380 pycom10g12120
rosa_chinensis	RchiOBHm_Chr6g0280891
rosa_laevigata	RLG00000013022
rosa_roxburghii	Rroxscaffold_7G00187520
rosa_rugosa	Rorug06G0136000
rosa_samantha	Rh6AG248900 Rh6BG250800 Rh6CG251600 Rh6DG243300
rosa_wichuraiana	Rw6G021520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	417
AasI	GACNNNNNNGTC	1 cut(s)	283
Acc65I	GGTACC	1 cut(s)	220
AccB1I	GGYRCC	1 cut(s)	220
AccI	GTMKAC	1 cut(s)	997
AclWI	GGATC	4 cut(s)	70, 347, 355, 662
AcoI	YGGCCR	2 cut(s)	520, 755
AcsI	RAATTY	2 cut(s)	28, 304
AcuI	CTGAAG	2 cut(s)	179, 986
AfaI	GTAC	3 cut(s)	222, 963, 1004
AfiI	CCNNNNNNNGG	4 cut(s)	604, 707, 892, 947
AgsI	TTSAA	5 cut(s)	173, 182, 197, 428, 817
AjnI	CCWGG	5 cut(s)	58, 339, 355, 439, 700
AleI	CACNNNNGTG	1 cut(s)	751
AloI	GAACNNNNNNTCC	2 cut(s)	485, 517
AluBI	AGCT	7 cut(s)	136, 381, 391, 742, 841, 882, 953
AluI	AGCT	7 cut(s)	136, 381, 391, 742, 841, 882, 953
Alw26I	GTCTC	2 cut(s)	340, 1011
AlwI	GGATC	4 cut(s)	70, 347, 355, 662
AoxI	GGCC	3 cut(s)	162, 520, 755
ApeKI	GCWGC	4 cut(s)	230, 403, 584, 587
ApoI	RAATTY	2 cut(s)	28, 304
Asp718I	GGTACC	1 cut(s)	220
AspLEI	GCGC	1 cut(s)	24
AspS9I	GGNCC	2 cut(s)	163, 276
AsuHPI	GGTGA	2 cut(s)	738, 998
AvaII	GGWCC	1 cut(s)	276
BaeGI	GKGCMC	1 cut(s)	490
BalI	TGGCCA	1 cut(s)	757
BanI	GGYRCC	1 cut(s)	220
BbvI	GCAGC	4 cut(s)	242, 415, 571, 574
BccI	CCATC	3 cut(s)	338, 488, 883
BciT130I	CCWGG	5 cut(s)	60, 341, 357, 441, 702
BcoDI	GTCTC	2 cut(s)	340, 1011
BfaI	CTAG	3 cut(s)	137, 723, 798
BglII	AGATCT	2 cut(s)	686, 725
BisI	GCNGC	4 cut(s)	231, 404, 585, 588
BlsI	GCNGC	4 cut(s)	232, 405, 586, 589
Bme1390I	CCNGG	5 cut(s)	60, 341, 357, 441, 702
Bme18I	GGWCC	1 cut(s)	276
BmgT120I	GGNCC	2 cut(s)	163, 276
BmiI	GGNNCC	1 cut(s)	222
BmrFI	CCNGG	5 cut(s)	60, 341, 357, 441, 702
BmsI	GCATC	2 cut(s)	9, 705
BpuEI	CTTGAG	1 cut(s)	848
BsaAI	YACGTR	1 cut(s)	396
BsaBI	GATNNNNATC	1 cut(s)	67
BsaJI	CCNNGG	3 cut(s)	339, 440, 946
BsaXI	ACNNNNNCTCC	2 cut(s)	884, 914
Bsc4I	CCNNNNNNNGG	4 cut(s)	604, 707, 892, 947
Bse1I	ACTGG	4 cut(s)	224, 422, 495, 866
Bse8I	GATNNNNATC	1 cut(s)	67
BseBI	CCWGG	5 cut(s)	60, 341, 357, 441, 702
BseDI	CCNNGG	3 cut(s)	339, 440, 946
BseGI	GGATG	4 cut(s)	349, 499, 720, 742
BseJI	GATNNNNATC	1 cut(s)	67
BseLI	CCNNNNNNNGG	4 cut(s)	604, 707, 892, 947
BseMII	CTCAG	1 cut(s)	909
BseNI	ACTGG	4 cut(s)	224, 422, 495, 866
BseSI	GKGCMC	1 cut(s)	490
BseX3I	CGGCCG	1 cut(s)	520
BseXI	GCAGC	4 cut(s)	242, 415, 571, 574
Bsh1285I	CGRYCG	1 cut(s)	523
BshFI	GGCC	3 cut(s)	164, 522, 757
BshNI	GGYRCC	1 cut(s)	220
BsiEI	CGRYCG	1 cut(s)	523
BslFI	GGGAC	1 cut(s)	836
BslI	CCNNNNNNNGG	4 cut(s)	604, 707, 892, 947
BsmAI	GTCTC	2 cut(s)	340, 1011
BsmFI	GGGAC	1 cut(s)	836
BsnI	GGCC	3 cut(s)	164, 522, 757
Bsp1286I	GDGCHC	1 cut(s)	490
Bsp143I	GATC	8 cut(s)	6, 62, 347, 352, 667, 686, 725, 955
BspANI	GGCC	3 cut(s)	164, 522, 757
BspCNI	CTCAG	1 cut(s)	910
BspLI	GGNNCC	1 cut(s)	222
BspPI	GGATC	4 cut(s)	70, 347, 355, 662
BspT107I	GGYRCC	1 cut(s)	220
BsrI	ACTGG	4 cut(s)	224, 422, 495, 866
BssECI	CCNNGG	3 cut(s)	339, 440, 946
BssMI	GATC	8 cut(s)	6, 62, 347, 352, 667, 686, 725, 955
BssNAI	GTATAC	1 cut(s)	998
Bst1107I	GTATAC	1 cut(s)	998
Bst2UI	CCWGG	5 cut(s)	60, 341, 357, 441, 702
Bst4CI	ACNGT	2 cut(s)	201, 1002
BstAPI	GCANNNNNTGC	1 cut(s)	661
BstBAI	YACGTR	1 cut(s)	396
BstC8I	GCNNGC	2 cut(s)	250, 973
BstDEI	CTNAG	2 cut(s)	118, 918
BstDSI	CCRYGG	1 cut(s)	946
BstENI	CCTNNNNNAGG	2 cut(s)	602, 890
BstF5I	GGATG	4 cut(s)	349, 499, 720, 742
BstHHI	GCGC	1 cut(s)	24
BstKTI	GATC	8 cut(s)	9, 65, 350, 355, 670, 689, 728, 958
BstMAI	GTCTC	2 cut(s)	340, 1011
BstMBI	GATC	8 cut(s)	6, 62, 347, 352, 667, 686, 725, 955
BstMCI	CGRYCG	1 cut(s)	523
BstMWI	GCNNNNNNNGC	2 cut(s)	661, 838
BstNI	CCWGG	5 cut(s)	60, 341, 357, 441, 702
BstNSI	RCATGY	1 cut(s)	252
BstSCI	CCNGG	5 cut(s)	58, 339, 355, 439, 700
BstSLI	GKGCMC	1 cut(s)	490
BstV1I	GCAGC	4 cut(s)	242, 415, 571, 574
BstX2I	RGATCY	3 cut(s)	347, 686, 725
BstYI	RGATCY	3 cut(s)	347, 686, 725
BstZ17I	GTATAC	1 cut(s)	998
BstZI	CGGCCG	1 cut(s)	520
BsuRI	GGCC	3 cut(s)	164, 522, 757
BtgI	CCRYGG	1 cut(s)	946
BtsCI	GGATG	4 cut(s)	349, 499, 720, 742
BtsIMutI	CAGTG	2 cut(s)	231, 488
Cac8I	GCNNGC	2 cut(s)	250, 973
CfoI	GCGC	1 cut(s)	24
Cfr13I	GGNCC	2 cut(s)	163, 276
Csp6I	GTAC	3 cut(s)	221, 962, 1003
CviAII	CATG	5 cut(s)	249, 619, 633, 665, 732
CviQI	GTAC	3 cut(s)	221, 962, 1003
DdeI	CTNAG	2 cut(s)	118, 918
DpnI	GATC	8 cut(s)	8, 64, 349, 354, 669, 688, 727, 957
DpnII	GATC	8 cut(s)	6, 62, 347, 352, 667, 686, 725, 955
DrdI	GACNNNNNNGTC	1 cut(s)	283
DseDI	GACNNNNNNGTC	1 cut(s)	283
EaeI	YGGCCR	2 cut(s)	520, 755
EagI	CGGCCG	1 cut(s)	520
EclXI	CGGCCG	1 cut(s)	520
Eco47I	GGWCC	1 cut(s)	276
Eco52I	CGGCCG	1 cut(s)	520
Eco57I	CTGAAG	2 cut(s)	179, 986
EcoNI	CCTNNNNNAGG	2 cut(s)	602, 890
EcoO109I	RGGNCCY	1 cut(s)	163
EcoRI	GAATTC	1 cut(s)	304
EcoRII	CCWGG	5 cut(s)	58, 339, 355, 439, 700
FaeI	CATG	5 cut(s)	252, 622, 636, 668, 735
FalI	AAGNNNNNCTT	2 cut(s)	101, 133
FaqI	GGGAC	1 cut(s)	836
FatI	CATG	5 cut(s)	248, 618, 632, 664, 731
FblI	GTMKAC	1 cut(s)	997
Fnu4HI	GCNGC	4 cut(s)	231, 404, 585, 588
FokI	GGATG	4 cut(s)	356, 506, 727, 749
Fsp4HI	GCNGC	4 cut(s)	231, 404, 585, 588
FspBI	CTAG	3 cut(s)	137, 723, 798
GlaI	GCGC	1 cut(s)	23
GluI	GCNGC	4 cut(s)	231, 404, 585, 588
HaeIII	GGCC	3 cut(s)	164, 522, 757
HhaI	GCGC	1 cut(s)	24
Hin1II	CATG	5 cut(s)	252, 622, 636, 668, 735
Hin6I	GCGC	1 cut(s)	22
HinP1I	GCGC	1 cut(s)	22
HincII	GTYRAC	1 cut(s)	859
HindII	GTYRAC	1 cut(s)	859
HinfI	GANTC	1 cut(s)	783
HphI	GGTGA	2 cut(s)	738, 998
Hpy166II	GTNNAC	3 cut(s)	152, 859, 998
Hpy188I	TCNGA	2 cut(s)	352, 691
Hpy188III	TCNNGA	5 cut(s)	173, 269, 560, 671, 827
Hpy8I	GTNNAC	3 cut(s)	152, 859, 998
HpyAV	CCTTC	2 cut(s)	154, 961
HpyCH4III	ACNGT	2 cut(s)	201, 1002
HpyCH4IV	ACGT	1 cut(s)	395
HpyCH4V	TGCA	5 cut(s)	252, 403, 455, 470, 664
HpyF10VI	GCNNNNNNNGC	2 cut(s)	661, 838
HpyF3I	CTNAG	2 cut(s)	118, 918
HpySE526I	ACGT	1 cut(s)	395
Hsp92II	CATG	5 cut(s)	252, 622, 636, 668, 735
HspAI	GCGC	1 cut(s)	22
KpnI	GGTACC	1 cut(s)	224
Kzo9I	GATC	8 cut(s)	6, 62, 347, 352, 667, 686, 725, 955
LmnI	GCTCC	2 cut(s)	562, 950
Lsp1109I	GCAGC	4 cut(s)	242, 415, 571, 574
LweI	GCATC	2 cut(s)	9, 705
MaeI	CTAG	3 cut(s)	137, 723, 798
MaeII	ACGT	1 cut(s)	395
MaeIII	GTNAC	1 cut(s)	773
MalI	GATC	8 cut(s)	8, 64, 349, 354, 669, 688, 727, 957
MboI	GATC	8 cut(s)	6, 62, 347, 352, 667, 686, 725, 955
MboII	GAAGA	1 cut(s)	551
MflI	RGATCY	3 cut(s)	347, 686, 725
MhlI	GDGCHC	1 cut(s)	490
MlsI	TGGCCA	1 cut(s)	757
MluCI	AATT	6 cut(s)	28, 240, 304, 446, 465, 552
MluNI	TGGCCA	1 cut(s)	757
MnlI	CCTC	5 cut(s)	22, 336, 574, 640, 886
Mox20I	TGGCCA	1 cut(s)	757
MscI	TGGCCA	1 cut(s)	757
MseI	TTAA	2 cut(s)	282, 293
MslI	CAYNNNNRTG	2 cut(s)	398, 751
Msp20I	TGGCCA	1 cut(s)	757
MspR9I	CCNGG	5 cut(s)	60, 341, 357, 441, 702
MvaI	CCWGG	5 cut(s)	60, 341, 357, 441, 702
MwoI	GCNNNNNNNGC	2 cut(s)	661, 838
NdeII	GATC	8 cut(s)	6, 62, 347, 352, 667, 686, 725, 955
NlaIII	CATG	5 cut(s)	252, 622, 636, 668, 735
NlaIV	GGNNCC	1 cut(s)	222
NmeAIII	GCCGAG	1 cut(s)	548
NspI	RCATGY	1 cut(s)	252
OliI	CACNNNNGTG	1 cut(s)	751
PaeI	GCATGC	1 cut(s)	252
PfeI	GAWTC	1 cut(s)	783
PfoI	TCCNGGA	2 cut(s)	58, 700
PkrI	GCNGC	4 cut(s)	232, 405, 586, 589
Ppu21I	YACGTR	1 cut(s)	396
PsiI	TTATAA	1 cut(s)	417
Psp6I	CCWGG	5 cut(s)	58, 339, 355, 439, 700
PspGI	CCWGG	5 cut(s)	58, 339, 355, 439, 700
PspN4I	GGNNCC	1 cut(s)	222
PspPI	GGNCC	2 cut(s)	163, 276
PsuI	RGATCY	3 cut(s)	347, 686, 725
RsaI	GTAC	3 cut(s)	222, 963, 1004
RsaNI	GTAC	3 cut(s)	221, 962, 1003
RseI	CAYNNNNRTG	2 cut(s)	398, 751
SaqAI	TTAA	2 cut(s)	282, 293
SatI	GCNGC	4 cut(s)	231, 404, 585, 588
Sau3AI	GATC	8 cut(s)	6, 62, 347, 352, 667, 686, 725, 955
Sau96I	GGNCC	2 cut(s)	163, 276
ScrFI	CCNGG	5 cut(s)	60, 341, 357, 441, 702
SduI	GDGCHC	1 cut(s)	490
SfaNI	GCATC	2 cut(s)	9, 705
SinI	GGWCC	1 cut(s)	276
SmiMI	CAYNNNNRTG	2 cut(s)	398, 751
SmlI	CTYRAG	1 cut(s)	827
SmoI	CTYRAG	1 cut(s)	827
SphI	GCATGC	1 cut(s)	252
Sse9I	AATT	6 cut(s)	28, 240, 304, 446, 465, 552
SspMI	CTAG	3 cut(s)	137, 723, 798
StyD4I	CCNGG	5 cut(s)	58, 339, 355, 439, 700
TaaI	ACNGT	2 cut(s)	201, 1002
TaiI	ACGT	1 cut(s)	398
TaqI	TCGA	1 cut(s)	537
TasI	AATT	6 cut(s)	28, 240, 304, 446, 465, 552
TatI	WGTACW	2 cut(s)	961, 1002
TfiI	GAWTC	1 cut(s)	783
Tru1I	TTAA	2 cut(s)	282, 293
Tru9I	TTAA	2 cut(s)	282, 293
TscAI	CASTG	2 cut(s)	231, 495
TseI	GCWGC	4 cut(s)	230, 403, 584, 587
TspDTI	ATGAA	2 cut(s)	221, 399
TspGWI	ACGGA	1 cut(s)	935
TspRI	CASTG	2 cut(s)	231, 495
VpaK11BI	GGWCC	1 cut(s)	276
XagI	CCTNNNNNAGG	2 cut(s)	602, 890
XapI	RAATTY	2 cut(s)	28, 304
XceI	RCATGY	1 cut(s)	252
XmiI	GTMKAC	1 cut(s)	997
XspI	CTAG	3 cut(s)	137, 723, 798

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.