MD05G1138700.v1.1

Alpha-1,3-mannosyl-glycoprotein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
Physical Location & Seq
Forward (+)
26910797 .. 26915910
5114 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1138700.v1.1.491

Sequence Viewer

Length: 1302 bp
ATGAAGAAAATTCTCTGCGATTTTCGGTTCCTCCTGTTTCTCGCAGCTGCGGCGTTCATCTATATCCAGATACGGCTTTTCACTACGCAGTCGAAGTACGCTGATCGCCTCGCCGATGCGATAGAGTCAGAGAACCAGTGTACATCTCAATTGAGGACACTTATTGATCAAATAAGCTTGCAACAAGGACAAATTGTTTCCCTTGAGGAAGAAAAGCAACGGCTGGAGCAAGAGTGTGGACAACTGAAGGTCCTAGTTCAAGAACTTGAAAGGAAAGGCCTAGGTCGGCTGATTGACAAAAACCAGGTGCCAGTGGCCGCAGTTGTAATTATGGCATGCAATCGTGCTGATTATCTGGAAAGGACTGTTAAGTCTGTTTTAAAGTATCAGAGTTCTGTTGCATCAAAATTTCCTCTATTTGTCTCCCAGGATGGATCGCATCCAGCTGTCAAACAAAAGGCTTTGAGCTACGATCAGCTTACCTATATGCAACATTTGGATTATGAACCAGTTCATGCTGAAAGACCTGGGGAGTTGATTGCATACTACAAAATTGCGCGTCATTACAAATGGGCACTGGATGGATTGTTCTACAAGCATAACTTCAACCGCGTAATCATACTTGAAGATGATATGGAAATTGCTCCCGATTTTTTCGATTATTTTGAGGCTGCAGCAGCTCTTCTTGACAAGGATAAGTCTATCATGGCCGTTTCCTCGTGGAATGACAATGGGCAAAAGCAGTTTGTGCATGATCCTAAAATACTTTATAGATCAGATTTCTTTCCTGGACTCGGGTGGATGCTGACTAGATCTACATGGGATGAGCTATCACCAAAATGGCCAAAGGCATATCCTTGTCGACAATTTATACGGCCAGAAGTGTGCAGAACATATAATTTTGGAGAACACGGTTCTAGTCTGGGACAGTTTTTCAAACAATATCTTGAGCCAATCAAGCTAAATGATGTCCCGGTTGACTGGAAATCAATGGATTTGAGCTACCTGATGGAGGACAAGTATATAAAGCACTTTGCTGACATTGTGCAAAAAGCTAAACCTATCCGTGGATCTGATCTTGTACTAAAGGCACGCAACATTGGTGGTGATGTTCGCGTACAGTACACGGACCAGCAGGACTTCAAATACATTGCTAGCCAGTTTGGTATCTTTGAAGAGTGGAAGGATGGTGTGCCACGGACAGCATATAAAGGAATAGTTGTTTTCCGGTACCATATCCCACACCGTATATTCCTTGTTGGTCCAGATTCTCTCAAGCAGCTCGGAGTTAATGATTCTTGA

Protein Analysis

434

Amino Acids

50.23

Weight (kDa)

7.61

Isoelectric Point (pI)

38.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GNT-I PF03071 15 - 430 1.4e-173 GNT-I family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 370
Acc65I GGTACC 1 cut(s) 1230
AccB1I GGYRCC 2 cut(s) 307, 1230
AccI GTMKAC 1 cut(s) 862
AccII CGCG 3 cut(s) 559, 612, 1116
AciI CCGC 3 cut(s) 50, 318, 610
AclWI GGATC 3 cut(s) 442, 749, 1078
AcoI YGGCCR 4 cut(s) 315, 708, 842, 875
AcsI RAATTY 2 cut(s) 9, 407
AcuI CTGAAG 1 cut(s) 266
AfaI GTAC 6 cut(s) 98, 142, 1083, 1119, 1124, 1232
AfiI CCNNNNNNNGG 3 cut(s) 794, 1012, 1067
AgsI TTSAA 7 cut(s) 260, 269, 607, 626, 937, 1144, 1175
AjnI CCWGG 4 cut(s) 303, 426, 526, 787
AloI GAACNNNNNNTCC 2 cut(s) 572, 604
Alw26I GTCTC 1 cut(s) 427
AlwI GGATC 3 cut(s) 442, 749, 1078
Ama87I CYCGRG 1 cut(s) 794
AoxI GGCC 5 cut(s) 277, 315, 708, 842, 875
ApeKI GCWGC 6 cut(s) 44, 47, 671, 674, 677, 1279
ApoI RAATTY 2 cut(s) 9, 407
Asp700I GAANNNNTTC 1 cut(s) 510
Asp718I GGTACC 1 cut(s) 1230
AspA2I CCTAGG 1 cut(s) 280
AspLEI GCGC 1 cut(s) 559
AspS9I GGNCC 3 cut(s) 250, 1129, 1262
AsuC2I CCSGG 1 cut(s) 974
AsuHPI GGTGA 2 cut(s) 825, 1118
AsuNHI GCTAGC 1 cut(s) 1154
AvaI CYCGRG 1 cut(s) 794
AvaII GGWCC 3 cut(s) 250, 1129, 1262
AvrII CCTAGG 1 cut(s) 280
BaeGI GKGCMC 1 cut(s) 577
BalI TGGCCA 1 cut(s) 844
BanI GGYRCC 2 cut(s) 307, 1230
BauI CACGAG 1 cut(s) 718
BbvI GCAGC 6 cut(s) 34, 56, 658, 686, 689, 1291
BccI CCATC 4 cut(s) 425, 575, 1003, 1181
BceAI ACGGC 4 cut(s) 89, 236, 695, 890
BciT130I CCWGG 4 cut(s) 305, 428, 528, 789
BclI TGATCA 1 cut(s) 166
BcnI CCSGG 1 cut(s) 974
BcoDI GTCTC 1 cut(s) 427
BfaI CTAG 5 cut(s) 254, 281, 810, 918, 1155
BfmI CTRYAG 1 cut(s) 672
BglII AGATCT 1 cut(s) 812
BisI GCNGC 8 cut(s) 45, 48, 51, 318, 672, 675, 678, 1280
BlnI CCTAGG 1 cut(s) 280
BlsI GCNGC 8 cut(s) 46, 49, 52, 319, 673, 676, 679, 1281
Bme1390I CCNGG 5 cut(s) 305, 428, 528, 789, 974
Bme18I GGWCC 3 cut(s) 250, 1129, 1262
BmeT110I CYCGRG 1 cut(s) 794
BmgT120I GGNCC 3 cut(s) 250, 1129, 1262
BmiI GGNNCC 3 cut(s) 29, 309, 1232
BmrFI CCNGG 5 cut(s) 305, 428, 528, 789, 974
BmsI GCATC 4 cut(s) 106, 410, 448, 792
BmtI GCTAGC 1 cut(s) 1158
BpmI CTGGAG 1 cut(s) 245
BpuEI CTTGAG 3 cut(s) 224, 968, 1259
BpuMI CCSGG 1 cut(s) 974
BsaJI CCNNGG 5 cut(s) 280, 426, 527, 1066, 1196
BsaWI WCCGGW 1 cut(s) 1227
BsaXI ACNNNNNCTCC 4 cut(s) 218, 248, 1004, 1034
Bsc4I CCNNNNNNNGG 3 cut(s) 794, 1012, 1067
Bse1I ACTGG 6 cut(s) 136, 311, 509, 582, 986, 1159
Bse3DI GCAATG 1 cut(s) 1149
BseBI CCWGG 4 cut(s) 305, 428, 528, 789
BseDI CCNNGG 5 cut(s) 280, 426, 527, 1066, 1196
BseGI GGATG 6 cut(s) 436, 439, 586, 807, 829, 1192
BseLI CCNNNNNNNGG 3 cut(s) 794, 1012, 1067
BseMI GCAATG 1 cut(s) 1149
BseNI ACTGG 6 cut(s) 136, 311, 509, 582, 986, 1159
BseSI GKGCMC 1 cut(s) 577
BseXI GCAGC 6 cut(s) 34, 56, 658, 686, 689, 1291
BsgI GTGCAG 1 cut(s) 907
Bsh1236I CGCG 3 cut(s) 559, 612, 1116
BshFI GGCC 5 cut(s) 279, 317, 710, 844, 877
BshNI GGYRCC 2 cut(s) 307, 1230
BsiHKCI CYCGRG 1 cut(s) 794
BsiSI CCGG 2 cut(s) 974, 1228
BslFI GGGAC 2 cut(s) 939, 956
BslI CCNNNNNNNGG 3 cut(s) 794, 1012, 1067
BsmAI GTCTC 1 cut(s) 427
BsmFI GGGAC 2 cut(s) 939, 956
BsnI GGCC 5 cut(s) 279, 317, 710, 844, 877
BsoBI CYCGRG 1 cut(s) 794
Bsp1286I GDGCHC 1 cut(s) 577
Bsp1407I TGTACA 1 cut(s) 140
Bsp143I GATC 9 cut(s) 103, 166, 434, 472, 754, 773, 812, 1070, 1075
BspACI CCGC 3 cut(s) 50, 318, 610
BspANI GGCC 5 cut(s) 279, 317, 710, 844, 877
BspFNI CGCG 3 cut(s) 559, 612, 1116
BspLI GGNNCC 3 cut(s) 29, 309, 1232
BspMAI CTGCAG 1 cut(s) 676
BspOI GCTAGC 1 cut(s) 1158
BspPI GGATC 3 cut(s) 442, 749, 1078
BspQI GCTCTTC 1 cut(s) 687
BspT107I GGYRCC 2 cut(s) 307, 1230
BsrDI GCAATG 1 cut(s) 1149
BsrGI TGTACA 1 cut(s) 140
BsrI ACTGG 6 cut(s) 136, 311, 509, 582, 986, 1159
BssECI CCNNGG 5 cut(s) 280, 426, 527, 1066, 1196
BssMI GATC 9 cut(s) 103, 166, 434, 472, 754, 773, 812, 1070, 1075
BssSI CACGAG 1 cut(s) 718
BssT1I CCWWGG 1 cut(s) 280
Bst2BI CACGAG 1 cut(s) 718
Bst2UI CCWGG 4 cut(s) 305, 428, 528, 789
Bst4CI ACNGT 5 cut(s) 367, 914, 930, 1122, 1247
Bst6I CTCTTC 2 cut(s) 687, 1170
BstAPI GCANNNNNTGC 1 cut(s) 748
BstAUI TGTACA 1 cut(s) 140
BstC8I GCNNGC 4 cut(s) 179, 337, 1093, 1156
BstDSI CCRYGG 2 cut(s) 1066, 1196
BstENI CCTNNNNNAGG 1 cut(s) 1010
BstF5I GGATG 6 cut(s) 436, 439, 586, 807, 829, 1192
BstFNI CGCG 3 cut(s) 559, 612, 1116
BstHHI GCGC 1 cut(s) 559
BstKTI GATC 9 cut(s) 106, 169, 437, 475, 757, 776, 815, 1073, 1078
BstMAI GTCTC 1 cut(s) 427
BstMBI GATC 9 cut(s) 103, 166, 434, 472, 754, 773, 812, 1070, 1075
BstMWI GCNNNNNNNGC 4 cut(s) 50, 677, 748, 958
BstNI CCWGG 4 cut(s) 305, 428, 528, 789
BstNSI RCATGY 1 cut(s) 339
BstSCI CCNGG 5 cut(s) 303, 426, 526, 787, 972
BstSFI CTRYAG 1 cut(s) 672
BstSLI GKGCMC 1 cut(s) 577
BstUI CGCG 3 cut(s) 559, 612, 1116
BstV1I GCAGC 6 cut(s) 34, 56, 658, 686, 689, 1291
BstX2I RGATCY 2 cut(s) 812, 1070
BstYI RGATCY 2 cut(s) 812, 1070
BsuRI GGCC 5 cut(s) 279, 317, 710, 844, 877
BtgI CCRYGG 2 cut(s) 1066, 1196
BtsCI GGATG 6 cut(s) 436, 439, 586, 807, 829, 1192
BtsIMutI CAGTG 3 cut(s) 143, 318, 575
Cac8I GCNNGC 4 cut(s) 179, 337, 1093, 1156
CfoI GCGC 1 cut(s) 559
Cfr13I GGNCC 3 cut(s) 250, 1129, 1262
CseI GACGC 1 cut(s) 548
CsiI ACCWGGT 1 cut(s) 303
Csp6I GTAC 6 cut(s) 97, 141, 1082, 1118, 1123, 1231
CspCI CAANNNNNGTGG 2 cut(s) 1084, 1119
CviAII CATG 5 cut(s) 336, 515, 706, 752, 819
CviQI GTAC 6 cut(s) 97, 141, 1082, 1118, 1123, 1231
DpnI GATC 9 cut(s) 105, 168, 436, 474, 756, 775, 814, 1072, 1077
DpnII GATC 9 cut(s) 103, 166, 434, 472, 754, 773, 812, 1070, 1075
DraI TTTAAA 1 cut(s) 381
DrdI GACNNNNNNGTC 1 cut(s) 370
DseDI GACNNNNNNGTC 1 cut(s) 370
EaeI YGGCCR 4 cut(s) 315, 708, 842, 875
Eam1104I CTCTTC 2 cut(s) 687, 1170
EarI CTCTTC 2 cut(s) 687, 1170
Eco130I CCWWGG 1 cut(s) 280
Eco147I AGGCCT 1 cut(s) 279
Eco47I GGWCC 3 cut(s) 250, 1129, 1262
Eco57I CTGAAG 1 cut(s) 266
Eco88I CYCGRG 1 cut(s) 794
EcoNI CCTNNNNNAGG 1 cut(s) 1010
EcoO109I RGGNCCY 1 cut(s) 250
EcoRII CCWGG 4 cut(s) 303, 426, 526, 787
EcoT14I CCWWGG 1 cut(s) 280
ErhI CCWWGG 1 cut(s) 280
FaeI CATG 5 cut(s) 339, 518, 709, 755, 822
FalI AAGNNNNNCTT 2 cut(s) 587, 619
FaqI GGGAC 2 cut(s) 939, 956
FatI CATG 5 cut(s) 335, 514, 705, 751, 818
FbaI TGATCA 1 cut(s) 166
FblI GTMKAC 1 cut(s) 862
Fnu4HI GCNGC 8 cut(s) 45, 48, 51, 318, 672, 675, 678, 1280
FokI GGATG 6 cut(s) 426, 443, 593, 814, 836, 1199
Fsp4HI GCNGC 8 cut(s) 45, 48, 51, 318, 672, 675, 678, 1280
FspBI CTAG 5 cut(s) 254, 281, 810, 918, 1155
GlaI GCGC 1 cut(s) 558
GluI GCNGC 8 cut(s) 45, 48, 51, 318, 672, 675, 678, 1280
GsuI CTGGAG 1 cut(s) 245
HaeIII GGCC 5 cut(s) 279, 317, 710, 844, 877
HapII CCGG 2 cut(s) 974, 1228
HgaI GACGC 1 cut(s) 548
HhaI GCGC 1 cut(s) 559
Hin1II CATG 5 cut(s) 339, 518, 709, 755, 822
Hin6I GCGC 1 cut(s) 557
HinP1I GCGC 1 cut(s) 557
HincII GTYRAC 2 cut(s) 863, 979
HindII GTYRAC 2 cut(s) 863, 979
HindIII AAGCTT 1 cut(s) 175
HinfI GANTC 4 cut(s) 125, 792, 1268, 1295
HpaII CCGG 2 cut(s) 974, 1228
HphI GGTGA 2 cut(s) 825, 1118
Hpy166II GTNNAC 5 cut(s) 141, 239, 863, 979, 1125
Hpy188I TCNGA 5 cut(s) 130, 390, 778, 1075, 1286
Hpy188III TCNNGA 8 cut(s) 67, 260, 356, 647, 686, 947, 1265, 1299
Hpy8I GTNNAC 5 cut(s) 141, 239, 863, 979, 1125
HpyAV CCTTC 2 cut(s) 241, 1177
HpyCH4III ACNGT 5 cut(s) 367, 914, 930, 1122, 1247
HpyCH4V TGCA 9 cut(s) 181, 339, 401, 490, 542, 674, 751, 888, 1048
HpyF10VI GCNNNNNNNGC 4 cut(s) 50, 677, 748, 958
Hsp92II CATG 5 cut(s) 339, 518, 709, 755, 822
HspAI GCGC 1 cut(s) 557
KpnI GGTACC 1 cut(s) 1234
Ksp22I TGATCA 1 cut(s) 166
Kzo9I GATC 9 cut(s) 103, 166, 434, 472, 754, 773, 812, 1070, 1075
LguI GCTCTTC 1 cut(s) 687
LmnI GCTCC 2 cut(s) 226, 649
Lsp1109I GCAGC 6 cut(s) 34, 56, 658, 686, 689, 1291
LweI GCATC 4 cut(s) 106, 410, 448, 792
MabI ACCWGGT 1 cut(s) 303
MaeI CTAG 5 cut(s) 254, 281, 810, 918, 1155
MalI GATC 9 cut(s) 105, 168, 436, 474, 756, 775, 814, 1072, 1077
MboI GATC 9 cut(s) 103, 166, 434, 472, 754, 773, 812, 1070, 1075
MboII GAAGA 5 cut(s) 16, 221, 638, 674, 1187
MfeI CAATTG 1 cut(s) 149
MflI RGATCY 2 cut(s) 812, 1070
MhlI GDGCHC 1 cut(s) 577
MlsI TGGCCA 1 cut(s) 844
MluCI AATT 9 cut(s) 9, 149, 192, 327, 407, 552, 639, 866, 898
MluNI TGGCCA 1 cut(s) 844
MlyI GAGTC 2 cut(s) 134, 786
MnlI CCTC 8 cut(s) 41, 119, 147, 199, 423, 661, 727, 1006
Mox20I TGGCCA 1 cut(s) 844
MroXI GAANNNNTTC 1 cut(s) 510
MscI TGGCCA 1 cut(s) 844
MseI TTAA 3 cut(s) 369, 380, 1290
MslI CAYNNNNRTG 1 cut(s) 838
Msp20I TGGCCA 1 cut(s) 844
MspA1I CMGCKG 2 cut(s) 47, 446
MspI CCGG 2 cut(s) 974, 1228
MspR9I CCNGG 5 cut(s) 305, 428, 528, 789, 974
MunI CAATTG 1 cut(s) 149
MvaI CCWGG 4 cut(s) 305, 428, 528, 789
MvnI CGCG 3 cut(s) 559, 612, 1116
MwoI GCNNNNNNNGC 4 cut(s) 50, 677, 748, 958
NciI CCSGG 1 cut(s) 974
NdeII GATC 9 cut(s) 103, 166, 434, 472, 754, 773, 812, 1070, 1075
NheI GCTAGC 1 cut(s) 1154
NlaIII CATG 5 cut(s) 339, 518, 709, 755, 822
NlaIV GGNNCC 3 cut(s) 29, 309, 1232
NspI RCATGY 1 cut(s) 339
PaeI GCATGC 1 cut(s) 339
PceI AGGCCT 1 cut(s) 279
PciSI GCTCTTC 1 cut(s) 687
PdmI GAANNNNTTC 1 cut(s) 510
PfeI GAWTC 2 cut(s) 1268, 1295
PfoI TCCNGGA 1 cut(s) 787
PkrI GCNGC 8 cut(s) 46, 49, 52, 319, 673, 676, 679, 1281
PleI GAGTC 2 cut(s) 133, 786
PpsI GAGTC 2 cut(s) 133, 786
PpuMI RGGWCCY 1 cut(s) 250
Psp5II RGGWCCY 1 cut(s) 250
Psp6I CCWGG 4 cut(s) 303, 426, 526, 787
PspGI CCWGG 4 cut(s) 303, 426, 526, 787
PspN4I GGNNCC 3 cut(s) 29, 309, 1232
PspPI GGNCC 3 cut(s) 250, 1129, 1262
PspPPI RGGWCCY 1 cut(s) 250
PstI CTGCAG 1 cut(s) 676
PsuI RGATCY 2 cut(s) 812, 1070
PvuII CAGCTG 2 cut(s) 47, 446
RsaI GTAC 6 cut(s) 98, 142, 1083, 1119, 1124, 1232
RsaNI GTAC 6 cut(s) 97, 141, 1082, 1118, 1123, 1231
RseI CAYNNNNRTG 1 cut(s) 838
SalI GTCGAC 1 cut(s) 861
SapI GCTCTTC 1 cut(s) 687
SaqAI TTAA 3 cut(s) 369, 380, 1290
SatI GCNGC 8 cut(s) 45, 48, 51, 318, 672, 675, 678, 1280
Sau3AI GATC 9 cut(s) 103, 166, 434, 472, 754, 773, 812, 1070, 1075
Sau96I GGNCC 3 cut(s) 250, 1129, 1262
SchI GAGTC 2 cut(s) 134, 786
ScrFI CCNGG 5 cut(s) 305, 428, 528, 789, 974
SduI GDGCHC 1 cut(s) 577
SexAI ACCWGGT 1 cut(s) 303
SfaNI GCATC 4 cut(s) 106, 410, 448, 792
SfcI CTRYAG 1 cut(s) 672
SinI GGWCC 3 cut(s) 250, 1129, 1262
SmiMI CAYNNNNRTG 1 cut(s) 838
SmlI CTYRAG 3 cut(s) 203, 947, 1274
SmoI CTYRAG 3 cut(s) 203, 947, 1274
SphI GCATGC 1 cut(s) 339
Sse9I AATT 9 cut(s) 9, 149, 192, 327, 407, 552, 639, 866, 898
SseBI AGGCCT 1 cut(s) 279
SsiI CCGC 3 cut(s) 50, 318, 610
SspMI CTAG 5 cut(s) 254, 281, 810, 918, 1155
StuI AGGCCT 1 cut(s) 279
StyD4I CCNGG 5 cut(s) 303, 426, 526, 787, 972
StyI CCWWGG 1 cut(s) 280
TaaI ACNGT 5 cut(s) 367, 914, 930, 1122, 1247
TaqI TCGA 3 cut(s) 92, 657, 862
TasI AATT 9 cut(s) 9, 149, 192, 327, 407, 552, 639, 866, 898
TatI WGTACW 3 cut(s) 140, 1081, 1122
TauI GCSGC 2 cut(s) 53, 320
TfiI GAWTC 2 cut(s) 1268, 1295
Tru1I TTAA 3 cut(s) 369, 380, 1290
Tru9I TTAA 3 cut(s) 369, 380, 1290
TscAI CASTG 3 cut(s) 143, 318, 582
TseI GCWGC 6 cut(s) 44, 47, 671, 674, 677, 1279
TspDTI ATGAA 4 cut(s) 17, 46, 503, 519
TspGWI ACGGA 3 cut(s) 1055, 1142, 1213
TspRI CASTG 3 cut(s) 143, 318, 582
VpaK11BI GGWCC 3 cut(s) 250, 1129, 1262
XagI CCTNNNNNAGG 1 cut(s) 1010
XapI RAATTY 2 cut(s) 9, 407
XceI RCATGY 1 cut(s) 339
XmaJI CCTAGG 1 cut(s) 280
XmiI GTMKAC 1 cut(s) 862
XmnI GAANNNNTTC 1 cut(s) 510
XspI CTAG 5 cut(s) 254, 281, 810, 918, 1155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.