FvH4_2g16770

Alpha-1,3-mannosyl-glycoprotein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Forward (+)
14606138 .. 14612624
6487 bp
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UTR
Exon/CDS
Intron
FvH4_2g16770.t3

Sequence Viewer

Length: 1335 bp
ATGAAGAATTTCCTCTGCGATTTTCGCTTCCTTCTACTCCTCGCAGCTGCCGCCTTCATCTATATCCAGATTCGGCTTTTCGCGACGCAATCACAGTATGCTGATCGCCTCGCCGATGCGATAGAGTCAGAGAATCAGTGTACATCTCAATTGAGATCACTAATTGATCAAATAAGCTTGCAGCAAGGTCAAATTGAGACTATGAAAGAACAAAAGGAACAGCTAGAGCAAGAGTGTGGACAACTGAAGGCCCTTGTTCAAGAACTTGAAAGGAAAGATGTTGAACGGTTGACTAACAAAGAACAGGCACCAGTGGCAGCAGTTGTAATTATGGCATGCAATCGTGCTGATTATCTGGAGAGGACCATTAAGTCTATTTTGAAATACCAGAGTTCTGTTGCCACAAAGTTTCCTCTATTTGTCTCCCAGGATGGATCTCATCCGGGTGTCAAAGATAAAGCTTTGAGCTATGACCAGCTCACGTATATGCAGCATTTGGATTATAAACCAGTTCAAACTGAAAGACCAGGGGAATTGATTGCATACTACAAAATTGCACGTCATTACAAATGGGCACTGGATGGACTCTTCTACAAGCATAAGTTCAACCGAGTAATCATACTTGAAGATGATATGGAAATTGCTCCTGATTTTTTTGATTACTTTGAGGCTGCTGCCGATCTCCTTGATAAGGATAAGTCTATCATGGCTGTTTCCTCATGGAATGACAATGGACAAAAGCAGTTTGTGTATGATCCAGAAGTACTTTATAGATCTGATTTCTTTCCTGGGCTTGGGTGGATGCTGTCTAGATCTACATGGGATGAGCTATCACCAAAGTGGCCAAAAGCTTACTGGGATGACTGGTTGAGGTTACAAGAGAATCACAAAGGTCGACAATTTCTTCGTCCAGAAGTGTGCAGAACATATAACTTTGGGGAACATGGTTCTAGTCTGGGGCAGTTTTACAAACAGTATCTTGAGCCAATCAAGCTGAATGATGTCCCTGTTGACTGGAAATCAATGGATTTGAGCTACCTGATGGAGGACAAGTATATAAAGCACTTTGCAGAGATTGTGAAAAAGGCGAAACCTGTCCATGGAGCTGATCTTGTACTGAAGGCACGCAATATTGCTGTTGATGTCCGTATACCGTACAATAACCAGCCAGACTTTGAACGCATTGCAAATGAATTTGGAATTTTTGAAGAGTGGAAGGATGGAATACCAAGGACAGCCTATAAAGGAGTAGTTGTTTTCCGACACCAAAACCGACAGCGTATATTCCTTGTTGGTCCAGGTTCTCTCAAGCAGCTTGGAATTGATGATTCTTGA

Protein Analysis

445

Amino Acids

51.83

Weight (kDa)

6.06

Isoelectric Point (pI)

42.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GNT-I PF03071 15 - 442 5.7e-184 GNT-I family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 504
AasI GACNNNNNNGTC 1 cut(s) 370
AccB1I GGYRCC 1 cut(s) 307
AccI GTMKAC 2 cut(s) 895, 1150
AccII CGCG 1 cut(s) 83
AciI CCGC 1 cut(s) 51
AclWI GGATC 2 cut(s) 442, 749
AcoI YGGCCR 1 cut(s) 842
AcsI RAATTY 3 cut(s) 7, 1193, 1200
AcuI CTGAAG 2 cut(s) 266, 1139
AfaI GTAC 4 cut(s) 142, 765, 1116, 1157
AfiI CCNNNNNNNGG 4 cut(s) 691, 794, 1045, 1100
AgsI TTSAA 9 cut(s) 260, 269, 284, 382, 515, 607, 626, 1178, 1208
AjiI CACGTC 1 cut(s) 560
AjnI CCWGG 4 cut(s) 426, 526, 787, 1297
AleI CACNNNNGTG 1 cut(s) 838
Alw26I GTCTC 2 cut(s) 191, 427
AlwI GGATC 2 cut(s) 442, 749
AoxI GGCC 2 cut(s) 249, 842
ApeKI GCWGC 8 cut(s) 44, 47, 181, 317, 490, 671, 674, 1312
ApoI RAATTY 3 cut(s) 7, 1193, 1200
ArsI GACNNNNNNTTYG 2 cut(s) 888, 920
Asp700I GAANNNNTTC 1 cut(s) 8
AspS9I GGNCC 3 cut(s) 250, 363, 1295
AsuC2I CCSGG 1 cut(s) 444
AsuHPI GGTGA 1 cut(s) 825
AvaII GGWCC 2 cut(s) 363, 1295
BaeGI GKGCMC 1 cut(s) 577
BalI TGGCCA 1 cut(s) 844
BanI GGYRCC 1 cut(s) 307
BbvI GCAGC 8 cut(s) 34, 56, 193, 329, 502, 658, 661, 1324
BccI CCATC 4 cut(s) 425, 575, 1036, 1214
BciT130I CCWGG 4 cut(s) 428, 528, 789, 1299
BclI TGATCA 1 cut(s) 166
BcnI CCSGG 1 cut(s) 444
BcoDI GTCTC 2 cut(s) 191, 427
BfaI CTAG 3 cut(s) 224, 810, 951
BglII AGATCT 2 cut(s) 773, 812
BisI GCNGC 9 cut(s) 45, 48, 51, 182, 318, 491, 672, 675, 1313
BlsI GCNGC 9 cut(s) 46, 49, 52, 183, 319, 492, 673, 676, 1314
BmcAI AGTACT 1 cut(s) 765
Bme1390I CCNGG 5 cut(s) 428, 444, 528, 789, 1299
Bme18I GGWCC 2 cut(s) 363, 1295
BmgBI CACGTC 1 cut(s) 560
BmgT120I GGNCC 3 cut(s) 250, 363, 1295
BmiI GGNNCC 1 cut(s) 309
BmrFI CCNGG 5 cut(s) 428, 444, 528, 789, 1299
BmrI ACTGGG 1 cut(s) 865
BmsI GCATC 2 cut(s) 106, 792
BmuI ACTGGG 1 cut(s) 865
BpmI CTGGAG 1 cut(s) 377
BpuEI CTTGAG 2 cut(s) 1001, 1292
BpuMI CCSGG 1 cut(s) 444
BsaAI YACGTR 1 cut(s) 483
BsaJI CCNNGG 5 cut(s) 426, 527, 788, 1099, 1229
BsaXI ACNNNNNCTCC 4 cut(s) 1037, 1067, 1239, 1269
Bsc4I CCNNNNNNNGG 4 cut(s) 691, 794, 1045, 1100
Bse1I ACTGG 6 cut(s) 311, 509, 582, 860, 869, 1019
Bse3DI GCAATG 1 cut(s) 1182
BseBI CCWGG 4 cut(s) 428, 528, 789, 1299
BseDI CCNNGG 5 cut(s) 426, 527, 788, 1099, 1229
BseGI GGATG 7 cut(s) 436, 439, 586, 807, 829, 865, 1225
BseLI CCNNNNNNNGG 4 cut(s) 691, 794, 1045, 1100
BseMI GCAATG 1 cut(s) 1182
BseNI ACTGG 6 cut(s) 311, 509, 582, 860, 869, 1019
BseRI GAGGAG 1 cut(s) 29
BseSI GKGCMC 1 cut(s) 577
BseXI GCAGC 8 cut(s) 34, 56, 193, 329, 502, 658, 661, 1324
BsgI GTGCAG 1 cut(s) 940
Bsh1236I CGCG 1 cut(s) 83
BshFI GGCC 2 cut(s) 251, 844
BshNI GGYRCC 1 cut(s) 307
BsiSI CCGG 1 cut(s) 443
BslFI GGGAC 1 cut(s) 989
BslI CCNNNNNNNGG 4 cut(s) 691, 794, 1045, 1100
BsmAI GTCTC 2 cut(s) 191, 427
BsmFI GGGAC 1 cut(s) 989
BsnI GGCC 2 cut(s) 251, 844
Bsp1286I GDGCHC 1 cut(s) 577
Bsp1407I TGTACA 1 cut(s) 140
Bsp143I GATC 9 cut(s) 103, 155, 166, 434, 679, 754, 773, 812, 1108
Bsp19I CCATGG 1 cut(s) 1099
Bsp68I TCGCGA 1 cut(s) 83
BspACI CCGC 1 cut(s) 51
BspANI GGCC 2 cut(s) 251, 844
BspFNI CGCG 1 cut(s) 83
BspLI GGNNCC 1 cut(s) 309
BspPI GGATC 2 cut(s) 442, 749
BspT107I GGYRCC 1 cut(s) 307
BsrDI GCAATG 1 cut(s) 1182
BsrGI TGTACA 1 cut(s) 140
BsrI ACTGG 6 cut(s) 311, 509, 582, 860, 869, 1019
BssECI CCNNGG 5 cut(s) 426, 527, 788, 1099, 1229
BssMI GATC 9 cut(s) 103, 155, 166, 434, 679, 754, 773, 812, 1108
BssNAI GTATAC 1 cut(s) 1151
BssT1I CCWWGG 2 cut(s) 1099, 1229
Bst1107I GTATAC 1 cut(s) 1151
Bst2UI CCWGG 4 cut(s) 428, 528, 789, 1299
Bst4CI ACNGT 4 cut(s) 96, 288, 975, 1155
Bst6I CTCTTC 2 cut(s) 593, 1203
BstAUI TGTACA 1 cut(s) 140
BstBAI YACGTR 1 cut(s) 483
BstC8I GCNNGC 3 cut(s) 179, 337, 1126
BstDSI CCRYGG 1 cut(s) 1099
BstENI CCTNNNNNAGG 2 cut(s) 689, 1043
BstF5I GGATG 7 cut(s) 436, 439, 586, 807, 829, 865, 1225
BstFNI CGCG 1 cut(s) 83
BstKTI GATC 9 cut(s) 106, 158, 169, 437, 682, 757, 776, 815, 1111
BstMAI GTCTC 2 cut(s) 191, 427
BstMBI GATC 9 cut(s) 103, 155, 166, 434, 679, 754, 773, 812, 1108
BstMWI GCNNNNNNNGC 4 cut(s) 24, 50, 314, 991
BstNI CCWGG 4 cut(s) 428, 528, 789, 1299
BstNSI RCATGY 1 cut(s) 339
BstSCI CCNGG 5 cut(s) 426, 442, 526, 787, 1297
BstSLI GKGCMC 1 cut(s) 577
BstUI CGCG 1 cut(s) 83
BstV1I GCAGC 8 cut(s) 34, 56, 193, 329, 502, 658, 661, 1324
BstX2I RGATCY 3 cut(s) 434, 773, 812
BstYI RGATCY 3 cut(s) 434, 773, 812
BstZ17I GTATAC 1 cut(s) 1151
BsuRI GGCC 2 cut(s) 251, 844
BtgI CCRYGG 1 cut(s) 1099
BtrI CACGTC 1 cut(s) 560
BtsCI GGATG 7 cut(s) 436, 439, 586, 807, 829, 865, 1225
BtsIMutI CAGTG 3 cut(s) 143, 318, 575
BtuMI TCGCGA 1 cut(s) 83
Cac8I GCNNGC 3 cut(s) 179, 337, 1126
Cfr13I GGNCC 3 cut(s) 250, 363, 1295
CseI GACGC 1 cut(s) 94
Csp6I GTAC 4 cut(s) 141, 764, 1115, 1156
CviAII CATG 6 cut(s) 336, 706, 720, 819, 944, 1100
CviQI GTAC 4 cut(s) 141, 764, 1115, 1156
DpnI GATC 9 cut(s) 105, 157, 168, 436, 681, 756, 775, 814, 1110
DpnII GATC 9 cut(s) 103, 155, 166, 434, 679, 754, 773, 812, 1108
DrdI GACNNNNNNGTC 1 cut(s) 370
DseDI GACNNNNNNGTC 1 cut(s) 370
EaeI YGGCCR 1 cut(s) 842
Eam1104I CTCTTC 2 cut(s) 593, 1203
EarI CTCTTC 2 cut(s) 593, 1203
Eco130I CCWWGG 2 cut(s) 1099, 1229
Eco47I GGWCC 2 cut(s) 363, 1295
Eco57I CTGAAG 2 cut(s) 266, 1139
EcoNI CCTNNNNNAGG 2 cut(s) 689, 1043
EcoO109I RGGNCCY 1 cut(s) 250
EcoRII CCWGG 4 cut(s) 426, 526, 787, 1297
EcoT14I CCWWGG 2 cut(s) 1099, 1229
ErhI CCWWGG 2 cut(s) 1099, 1229
FaeI CATG 6 cut(s) 339, 709, 723, 822, 947, 1103
FaqI GGGAC 1 cut(s) 989
FatI CATG 6 cut(s) 335, 705, 719, 818, 943, 1099
FbaI TGATCA 1 cut(s) 166
FblI GTMKAC 2 cut(s) 895, 1150
Fnu4HI GCNGC 9 cut(s) 45, 48, 51, 182, 318, 491, 672, 675, 1313
FokI GGATG 7 cut(s) 426, 443, 593, 814, 836, 872, 1232
Fsp4HI GCNGC 9 cut(s) 45, 48, 51, 182, 318, 491, 672, 675, 1313
FspBI CTAG 3 cut(s) 224, 810, 951
GluI GCNGC 9 cut(s) 45, 48, 51, 182, 318, 491, 672, 675, 1313
GsuI CTGGAG 1 cut(s) 377
HaeIII GGCC 2 cut(s) 251, 844
HapII CCGG 1 cut(s) 443
HgaI GACGC 1 cut(s) 94
Hin1II CATG 6 cut(s) 339, 709, 723, 822, 947, 1103
HincII GTYRAC 3 cut(s) 291, 896, 1012
HindII GTYRAC 3 cut(s) 291, 896, 1012
HindIII AAGCTT 3 cut(s) 175, 459, 849
HinfI GANTC 6 cut(s) 70, 125, 133, 585, 883, 1328
HpaII CCGG 1 cut(s) 443
HphI GGTGA 1 cut(s) 825
Hpy166II GTNNAC 6 cut(s) 141, 239, 291, 896, 1012, 1151
Hpy188I TCNGA 3 cut(s) 130, 778, 1262
Hpy8I GTNNAC 6 cut(s) 141, 239, 291, 896, 1012, 1151
Hpy99I CGWCG 1 cut(s) 88
HpyAV CCTTC 5 cut(s) 41, 64, 241, 1114, 1210
HpyCH4III ACNGT 4 cut(s) 96, 288, 975, 1155
HpyCH4IV ACGT 2 cut(s) 482, 559
HpyCH4V TGCA 8 cut(s) 181, 339, 490, 542, 557, 921, 1070, 1187
HpyF10VI GCNNNNNNNGC 4 cut(s) 24, 50, 314, 991
HpySE526I ACGT 2 cut(s) 482, 559
Hsp92II CATG 6 cut(s) 339, 709, 723, 822, 947, 1103
Ksp22I TGATCA 1 cut(s) 166
Kzo9I GATC 9 cut(s) 103, 155, 166, 434, 679, 754, 773, 812, 1108
LmnI GCTCC 2 cut(s) 649, 1103
Lsp1109I GCAGC 8 cut(s) 34, 56, 193, 329, 502, 658, 661, 1324
LweI GCATC 2 cut(s) 106, 792
MaeI CTAG 3 cut(s) 224, 810, 951
MaeII ACGT 2 cut(s) 482, 559
MaeIII GTNAC 1 cut(s) 873
MalI GATC 9 cut(s) 105, 157, 168, 436, 681, 756, 775, 814, 1110
MboI GATC 9 cut(s) 103, 155, 166, 434, 679, 754, 773, 812, 1108
MboII GAAGA 5 cut(s) 16, 580, 638, 896, 1220
MfeI CAATTG 1 cut(s) 149
MflI RGATCY 3 cut(s) 434, 773, 812
MhlI GDGCHC 1 cut(s) 577
MlsI TGGCCA 1 cut(s) 844
MluNI TGGCCA 1 cut(s) 844
MlyI GAGTC 2 cut(s) 134, 579
MmeI TCCRAC 1 cut(s) 1285
MnlI CCTC 9 cut(s) 23, 50, 119, 354, 423, 661, 727, 864, 1039
Mox20I TGGCCA 1 cut(s) 844
MroXI GAANNNNTTC 1 cut(s) 8
MscI TGGCCA 1 cut(s) 844
MseI TTAA 1 cut(s) 369
MslI CAYNNNNRTG 3 cut(s) 444, 485, 838
Msp20I TGGCCA 1 cut(s) 844
MspA1I CMGCKG 1 cut(s) 47
MspI CCGG 1 cut(s) 443
MspR9I CCNGG 5 cut(s) 428, 444, 528, 789, 1299
MunI CAATTG 1 cut(s) 149
MvaI CCWGG 4 cut(s) 428, 528, 789, 1299
MvnI CGCG 1 cut(s) 83
MwoI GCNNNNNNNGC 4 cut(s) 24, 50, 314, 991
NciI CCSGG 1 cut(s) 444
NcoI CCATGG 1 cut(s) 1099
NdeII GATC 9 cut(s) 103, 155, 166, 434, 679, 754, 773, 812, 1108
NlaIII CATG 6 cut(s) 339, 709, 723, 822, 947, 1103
NlaIV GGNNCC 1 cut(s) 309
NruI TCGCGA 1 cut(s) 83
NspI RCATGY 1 cut(s) 339
OliI CACNNNNGTG 1 cut(s) 838
PaeI GCATGC 1 cut(s) 339
PdmI GAANNNNTTC 1 cut(s) 8
PfeI GAWTC 4 cut(s) 70, 133, 883, 1328
PkrI GCNGC 9 cut(s) 46, 49, 52, 183, 319, 492, 673, 676, 1314
PleI GAGTC 2 cut(s) 133, 579
PpsI GAGTC 2 cut(s) 133, 579
Ppu21I YACGTR 1 cut(s) 483
PsiI TTATAA 1 cut(s) 504
Psp6I CCWGG 4 cut(s) 426, 526, 787, 1297
PspGI CCWGG 4 cut(s) 426, 526, 787, 1297
PspN4I GGNNCC 1 cut(s) 309
PspPI GGNCC 3 cut(s) 250, 363, 1295
PsuI RGATCY 3 cut(s) 434, 773, 812
PvuII CAGCTG 1 cut(s) 47
RruI TCGCGA 1 cut(s) 83
RsaI GTAC 4 cut(s) 142, 765, 1116, 1157
RsaNI GTAC 4 cut(s) 141, 764, 1115, 1156
RseI CAYNNNNRTG 3 cut(s) 444, 485, 838
SalI GTCGAC 1 cut(s) 894
SaqAI TTAA 1 cut(s) 369
SatI GCNGC 9 cut(s) 45, 48, 51, 182, 318, 491, 672, 675, 1313
Sau3AI GATC 9 cut(s) 103, 155, 166, 434, 679, 754, 773, 812, 1108
Sau96I GGNCC 3 cut(s) 250, 363, 1295
ScaI AGTACT 1 cut(s) 765
SchI GAGTC 2 cut(s) 134, 579
ScrFI CCNGG 5 cut(s) 428, 444, 528, 789, 1299
SduI GDGCHC 1 cut(s) 577
SfaNI GCATC 2 cut(s) 106, 792
SinI GGWCC 2 cut(s) 363, 1295
SmiMI CAYNNNNRTG 3 cut(s) 444, 485, 838
SmlI CTYRAG 2 cut(s) 980, 1307
SmoI CTYRAG 2 cut(s) 980, 1307
SphI GCATGC 1 cut(s) 339
SsiI CCGC 1 cut(s) 51
SspI AATATT 1 cut(s) 1132
SspMI CTAG 3 cut(s) 224, 810, 951
StyD4I CCNGG 5 cut(s) 426, 442, 526, 787, 1297
StyI CCWWGG 2 cut(s) 1099, 1229
TaaI ACNGT 4 cut(s) 96, 288, 975, 1155
TaiI ACGT 2 cut(s) 485, 562
TaqI TCGA 1 cut(s) 895
TatI WGTACW 3 cut(s) 140, 763, 1114
TauI GCSGC 1 cut(s) 53
TfiI GAWTC 4 cut(s) 70, 133, 883, 1328
Tru1I TTAA 1 cut(s) 369
Tru9I TTAA 1 cut(s) 369
TscAI CASTG 3 cut(s) 143, 318, 582
TseI GCWGC 8 cut(s) 44, 47, 181, 317, 490, 671, 674, 1312
TspDTI ATGAA 4 cut(s) 17, 46, 218, 1206
TspGWI ACGGA 1 cut(s) 1136
TspRI CASTG 3 cut(s) 143, 318, 582
VpaK11BI GGWCC 2 cut(s) 363, 1295
XagI CCTNNNNNAGG 2 cut(s) 689, 1043
XapI RAATTY 3 cut(s) 7, 1193, 1200
XbaI TCTAGA 1 cut(s) 809
XceI RCATGY 1 cut(s) 339
XcmI CCANNNNNNNNNTGG 1 cut(s) 852
XmiI GTMKAC 2 cut(s) 895, 1150
XmnI GAANNNNTTC 1 cut(s) 8
XspI CTAG 3 cut(s) 224, 810, 951
ZrmI AGTACT 1 cut(s) 765
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.