Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011477

Physical Location & Seq

Genomic Coordinates Forward (+)

17967050 .. 17969958

Gene Structure 2909 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G38360.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGGATATATTAAAGTCTTACCATCTCCTAGCTGCTGCTTACTCGGCTCCTGCGTGGGCAAGCTTTATGGCCGGTGCTTTTTTGGTTCTCACCCTCTCCCTTTCCTTGTTTCTTGTCTTCGATCACCTTTCTACTTACAAGAACCCTGAGGAGCAAAAGTTTTTGATTGGAGTCATCCTCATGGTCCCTTGCTATTCTATTGAATCGTTTGCATCACTTGTTAAACCATCCATCAGTGTTGACTGTGGGATTCTTCGAGACTGCTATGAATCCTTTGCCATGTACTGTTTTGGTAGATACCTTGTTGCCTGCATTGGTGGGGAAGAAAGGACTATCGAGTTTATGGAAAGACAAGGGCGTAAGAGCTTTAAGACGCCACTCTTAGATCACAAGGATGAAAAGGGAATCATCAAACATCCTTTTCCTATGAATTTATTCTTAAAACCGTGGAGGCTCAGTCCCTGGTTTTATCAAGTTGTTAAGTTTGGTATTGTTCAATATATGATAATAAAGTCTTTAACTGCCCTCACAGCTCTGATTCTTGAAGCCTTCGGTGTGTACTGTGAAGGAGAGTTTAAATGGGGATGTGGGTACCCTTATTTGGCAGTTGTTCTAAATTTTAGTCAGTCATGGGCATTATACTGTCTGGTTCAGTTCTATGGTGCAACGAAAGATGAGCTTGCACACATCCAACCACTGGCTAAATTTCTAACATTTAAGTCGATTGTGTTTCTCACTTGGTGGCAAGGTGTTGCCATTGCTCTCCTCTCTTCCCTCGGCTTGTTCAAAAGTTCAATTGCACAAAGCTTGCAGTTGAAGACTAGCGTGCAAGATTTCATCATTTGCATAGAGTGCAGATGGGTATTGCTTCCGTTGTTCACCTGTATGTATTCCCAGCAAAGCCTTATGGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0006810 GO:0006996 GO:0007033 GO:0008150 GO:0008219 GO:0009705 GO:0009966 GO:0009968 GO:0009987 GO:0010646 GO:0010648 GO:0012501 GO:0016020 GO:0016021 GO:0016043 GO:0016192 GO:0023051 GO:0023057 GO:0031090 GO:0031224 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0065007 GO:0071840 GO:0098588 GO:0098805 GO:0098876 GO:1900457 GO:1900458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Solute_trans_a

Protein Analysis

304

Amino Acids

34.66

Weight (kDa)

8.22

Isoelectric Point (pI)

41.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Solute_trans_a	PF03619	22 - 301	4.6e-93	Organic solute transporter Ostalpha

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011477)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38360
fragaria_vesca	FvH4_2g16560 FvH4_2g16560
malus_domestica	MD05G1133900.v1.1 MD10G1138900.v1.1
prunus_persica	Prupe.8G177700_v2.0.a1
pyrus_communis	pycom05g13070 pycom10g11810
rosa_chinensis	RchiOBHm_Chr6g0280631
rosa_laevigata	RLG00000013042
rosa_multiflora	Rmu_sc0000976.1_g000001
rosa_roxburghii	Rroxscaffold_7G00187860
rosa_rugosa	Rorug06G0133000 Rorug06G0133100 Rorug06G0133200
rosa_samantha	Rh6AG245600 Rh6BG248000 Rh6CG249400 Rh6DG240600
rosa_wichuraiana	Rw6G021260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	591
AccB1I	GGYRCC	1 cut(s)	591
AccB7I	CCANNNNNTGG	1 cut(s)	697
AcoI	YGGCCR	1 cut(s)	69
AcsI	RAATTY	3 cut(s)	430, 616, 704
AcyI	GRCGYC	1 cut(s)	374
AdeI	CACNNNGTG	1 cut(s)	741
AfaI	GTAC	3 cut(s)	284, 560, 593
AfiI	CCNNNNNNNGG	2 cut(s)	601, 697
AgsI	TTSAA	6 cut(s)	203, 497, 545, 787, 795, 817
AjnI	CCWGG	1 cut(s)	461
AluBI	AGCT	6 cut(s)	32, 63, 366, 533, 679, 807
AluI	AGCT	6 cut(s)	32, 63, 366, 533, 679, 807
Alw26I	GTCTC	1 cut(s)	252
AlwNI	CAGNNNCTG	1 cut(s)	462
AoxI	GGCC	1 cut(s)	69
ApeKI	GCWGC	2 cut(s)	32, 35
ApoI	RAATTY	3 cut(s)	430, 616, 704
Asp700I	GAANNNNTTC	1 cut(s)	434
Asp718I	GGTACC	1 cut(s)	591
AspS9I	GGNCC	1 cut(s)	184
AsuHPI	GGTGA	3 cut(s)	82, 116, 871
AvaII	GGWCC	1 cut(s)	184
AxyI	CCTNAGG	1 cut(s)	147
BanI	GGYRCC	1 cut(s)	591
BbsI	GAAGAC	2 cut(s)	109, 824
BbvI	GCAGC	2 cut(s)	19, 22
BccI	CCATC	4 cut(s)	30, 235, 239, 852
BciT130I	CCWGG	1 cut(s)	463
BcoDI	GTCTC	1 cut(s)	252
BfaI	CTAG	2 cut(s)	29, 822
BisI	GCNGC	2 cut(s)	33, 36
BlsI	GCNGC	2 cut(s)	34, 37
Bme1390I	CCNGG	1 cut(s)	463
Bme18I	GGWCC	1 cut(s)	184
BmgT120I	GGNCC	1 cut(s)	184
BmiI	GGNNCC	3 cut(s)	48, 186, 593
BmrFI	CCNGG	1 cut(s)	463
BmsI	GCATC	1 cut(s)	221
BpiI	GAAGAC	2 cut(s)	109, 824
BplI	GAGNNNNNCTC	2 cut(s)	162, 194
BsaHI	GRCGYC	1 cut(s)	374
BsaJI	CCNNGG	3 cut(s)	446, 461, 775
BsaXI	ACNNNNNCTCC	4 cut(s)	143, 173, 442, 472
Bsc4I	CCNNNNNNNGG	2 cut(s)	601, 697
Bse118I	RCCGGY	1 cut(s)	71
Bse1I	ACTGG	1 cut(s)	702
Bse21I	CCTNAGG	1 cut(s)	147
Bse3DI	GCAATG	1 cut(s)	756
BseBI	CCWGG	1 cut(s)	463
BseDI	CCNNGG	3 cut(s)	446, 461, 775
BseGI	GGATG	6 cut(s)	174, 227, 400, 415, 590, 687
BseLI	CCNNNNNNNGG	2 cut(s)	601, 697
BseMI	GCAATG	1 cut(s)	756
BseMII	CTCAG	2 cut(s)	138, 469
BseNI	ACTGG	1 cut(s)	702
BseRI	GAGGAG	2 cut(s)	164, 755
BseXI	GCAGC	2 cut(s)	19, 22
BseYI	CCCAGC	1 cut(s)	894
BsgI	GTGCAG	1 cut(s)	874
BshFI	GGCC	1 cut(s)	71
BshNI	GGYRCC	1 cut(s)	591
BsiSI	CCGG	1 cut(s)	72
BslFI	GGGAC	2 cut(s)	170, 444
BslI	CCNNNNNNNGG	2 cut(s)	601, 697
BsmAI	GTCTC	1 cut(s)	252
BsmFI	GGGAC	2 cut(s)	170, 444
BsnI	GGCC	1 cut(s)	71
Bsp143I	GATC	2 cut(s)	121, 385
BspANI	GGCC	1 cut(s)	71
BspCNI	CTCAG	2 cut(s)	139, 468
BspLI	GGNNCC	3 cut(s)	48, 186, 593
BspT107I	GGYRCC	1 cut(s)	591
BsrDI	GCAATG	1 cut(s)	756
BsrFI	RCCGGY	1 cut(s)	71
BsrI	ACTGG	1 cut(s)	702
BssAI	RCCGGY	1 cut(s)	71
BssECI	CCNNGG	3 cut(s)	446, 461, 775
BssMI	GATC	2 cut(s)	121, 385
BssNI	GRCGYC	1 cut(s)	374
Bst2UI	CCWGG	1 cut(s)	463
Bst4CI	ACNGT	5 cut(s)	245, 287, 447, 563, 644
Bst6I	CTCTTC	1 cut(s)	775
BstACI	GRCGYC	1 cut(s)	374
BstAPI	GCANNNNNTGC	1 cut(s)	852
BstC8I	GCNNGC	5 cut(s)	61, 310, 681, 809, 827
BstDEI	CTNAG	3 cut(s)	147, 382, 455
BstDSI	CCRYGG	1 cut(s)	446
BstF5I	GGATG	6 cut(s)	174, 227, 400, 415, 590, 687
BstKTI	GATC	2 cut(s)	124, 388
BstMAI	GTCTC	1 cut(s)	252
BstMBI	GATC	2 cut(s)	121, 385
BstMWI	GCNNNNNNNGC	3 cut(s)	44, 530, 852
BstNI	CCWGG	1 cut(s)	463
BstSCI	CCNGG	1 cut(s)	461
BstV1I	GCAGC	2 cut(s)	19, 22
BstV2I	GAAGAC	2 cut(s)	109, 824
Bsu36I	CCTNAGG	1 cut(s)	147
BsuRI	GGCC	1 cut(s)	71
BtgI	CCRYGG	1 cut(s)	446
BtsCI	GGATG	6 cut(s)	174, 227, 400, 415, 590, 687
BtsIMutI	CAGTG	2 cut(s)	241, 695
Cac8I	GCNNGC	5 cut(s)	61, 310, 681, 809, 827
CaiI	CAGNNNCTG	1 cut(s)	462
Cfr10I	RCCGGY	1 cut(s)	71
Cfr13I	GGNCC	1 cut(s)	184
CseI	GACGC	1 cut(s)	382
Csp6I	GTAC	3 cut(s)	283, 559, 592
CviAII	CATG	3 cut(s)	181, 280, 630
CviQI	GTAC	3 cut(s)	283, 559, 592
DdeI	CTNAG	3 cut(s)	147, 382, 455
DpnI	GATC	2 cut(s)	123, 387
DpnII	GATC	2 cut(s)	121, 385
DraI	TTTAAA	1 cut(s)	577
DraIII	CACNNNGTG	1 cut(s)	741
EaeI	YGGCCR	1 cut(s)	69
Eam1104I	CTCTTC	1 cut(s)	775
EarI	CTCTTC	1 cut(s)	775
Eco47I	GGWCC	1 cut(s)	184
Eco81I	CCTNAGG	1 cut(s)	147
EcoRII	CCWGG	1 cut(s)	461
FaeI	CATG	3 cut(s)	184, 283, 633
FalI	AAGNNNNNCTT	2 cut(s)	663, 695
FaqI	GGGAC	2 cut(s)	170, 444
FatI	CATG	3 cut(s)	180, 279, 629
Fnu4HI	GCNGC	2 cut(s)	33, 36
FokI	GGATG	6 cut(s)	161, 214, 402, 407, 597, 674
Fsp4HI	GCNGC	2 cut(s)	33, 36
FspBI	CTAG	2 cut(s)	29, 822
GluI	GCNGC	2 cut(s)	33, 36
GsaI	CCCAGC	1 cut(s)	898
HaeIII	GGCC	1 cut(s)	71
HapII	CCGG	1 cut(s)	72
HgaI	GACGC	1 cut(s)	382
Hin1I	GRCGYC	1 cut(s)	374
Hin1II	CATG	3 cut(s)	184, 283, 633
HincII	GTYRAC	1 cut(s)	241
HindII	GTYRAC	1 cut(s)	241
HindIII	AAGCTT	2 cut(s)	61, 805
HinfI	GANTC	6 cut(s)	171, 203, 250, 269, 405, 538
HpaII	CCGG	1 cut(s)	72
HphI	GGTGA	3 cut(s)	82, 116, 871
Hpy166II	GTNNAC	3 cut(s)	241, 559, 879
Hpy188I	TCNGA	1 cut(s)	537
Hpy188III	TCNNGA	2 cut(s)	257, 542
Hpy8I	GTNNAC	3 cut(s)	241, 559, 879
HpyAV	CCTTC	2 cut(s)	559, 560
HpyCH4III	ACNGT	5 cut(s)	245, 287, 447, 563, 644
HpyCH4V	TGCA	9 cut(s)	212, 312, 665, 683, 800, 811, 829, 846, 855
HpyF10VI	GCNNNNNNNGC	3 cut(s)	44, 530, 852
HpyF3I	CTNAG	3 cut(s)	147, 382, 455
Hsp92I	GRCGYC	1 cut(s)	374
Hsp92II	CATG	3 cut(s)	184, 283, 633
KpnI	GGTACC	1 cut(s)	595
Kzo9I	GATC	2 cut(s)	121, 385
LmnI	GCTCC	2 cut(s)	52, 151
Lsp1109I	GCAGC	2 cut(s)	19, 22
LweI	GCATC	1 cut(s)	221
MaeI	CTAG	2 cut(s)	29, 822
MalI	GATC	2 cut(s)	123, 387
MboI	GATC	2 cut(s)	121, 385
MboII	GAAGA	5 cut(s)	109, 245, 335, 762, 829
MfeI	CAATTG	1 cut(s)	795
MluCI	AATT	4 cut(s)	430, 616, 704, 795
MlyI	GAGTC	1 cut(s)	180
MmeI	TCCRAC	1 cut(s)	715
MnlI	CCTC	7 cut(s)	104, 142, 188, 444, 536, 776, 785
MroXI	GAANNNNTTC	1 cut(s)	434
MseI	TTAA	8 cut(s)	11, 222, 369, 440, 480, 518, 576, 717
MslI	CAYNNNNRTG	3 cut(s)	179, 393, 884
MspI	CCGG	1 cut(s)	72
MspR9I	CCNGG	1 cut(s)	463
MunI	CAATTG	1 cut(s)	795
MvaI	CCWGG	1 cut(s)	463
MwoI	GCNNNNNNNGC	3 cut(s)	44, 530, 852
NdeII	GATC	2 cut(s)	121, 385
NlaIII	CATG	3 cut(s)	184, 283, 633
NlaIV	GGNNCC	3 cut(s)	48, 186, 593
NmeAIII	GCCGAG	2 cut(s)	23, 756
PcsI	WCGNNNNNNNCGW	1 cut(s)	50
PdmI	GAANNNNTTC	1 cut(s)	434
PfeI	GAWTC	5 cut(s)	203, 250, 269, 405, 538
PflMI	CCANNNNNTGG	1 cut(s)	697
PkrI	GCNGC	2 cut(s)	34, 37
PleI	GAGTC	1 cut(s)	179
PpsI	GAGTC	1 cut(s)	179
Psp6I	CCWGG	1 cut(s)	461
PspFI	CCCAGC	1 cut(s)	894
PspGI	CCWGG	1 cut(s)	461
PspN4I	GGNNCC	3 cut(s)	48, 186, 593
PspPI	GGNCC	1 cut(s)	184
PstNI	CAGNNNCTG	1 cut(s)	462
RsaI	GTAC	3 cut(s)	284, 560, 593
RsaNI	GTAC	3 cut(s)	283, 559, 592
RseI	CAYNNNNRTG	3 cut(s)	179, 393, 884
SaqAI	TTAA	8 cut(s)	11, 222, 369, 440, 480, 518, 576, 717
SatI	GCNGC	2 cut(s)	33, 36
Sau3AI	GATC	2 cut(s)	121, 385
Sau96I	GGNCC	1 cut(s)	184
SchI	GAGTC	1 cut(s)	180
ScrFI	CCNGG	1 cut(s)	463
SfaNI	GCATC	1 cut(s)	221
SinI	GGWCC	1 cut(s)	184
SmiMI	CAYNNNNRTG	3 cut(s)	179, 393, 884
Sse9I	AATT	4 cut(s)	430, 616, 704, 795
SspMI	CTAG	2 cut(s)	29, 822
StyD4I	CCNGG	1 cut(s)	461
TaaI	ACNGT	5 cut(s)	245, 287, 447, 563, 644
TaqI	TCGA	4 cut(s)	120, 256, 336, 722
TasI	AATT	4 cut(s)	430, 616, 704, 795
TatI	WGTACW	2 cut(s)	282, 558
TfiI	GAWTC	5 cut(s)	203, 250, 269, 405, 538
Tru1I	TTAA	8 cut(s)	11, 222, 369, 440, 480, 518, 576, 717
Tru9I	TTAA	8 cut(s)	11, 222, 369, 440, 480, 518, 576, 717
TscAI	CASTG	2 cut(s)	241, 702
TseI	GCWGC	2 cut(s)	32, 35
TspDTI	ATGAA	4 cut(s)	282, 411, 443, 826
TspGWI	ACGGA	1 cut(s)	861
TspRI	CASTG	2 cut(s)	241, 702
Van91I	CCANNNNNTGG	1 cut(s)	697
VpaK11BI	GGWCC	1 cut(s)	184
XapI	RAATTY	3 cut(s)	430, 616, 704
XmnI	GAANNNNTTC	1 cut(s)	434
XspI	CTAG	2 cut(s)	29, 822

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.