Prupe.8G177700_v2.0.a1

Transmembrane protein 184 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0011477
Physical Location & Seq
Reverse (-)
17914267 .. 17917853
3587 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G177700.1

Sequence Viewer

Length: 1464 bp
ATGAAGATAACACCATTTATCGATCTCATTACCCAGTTGGCCTACACACCTCCTACGTGGGCAAGTCTAGTTTCCGGTGTTTTTGTACTCATCACTCTTACTCTTTCAATATATCTTGTGTTTGAGCACCTTTCTGCATACAAACTTCCTGAGGAGCAAAAGTTTTTAATTGGTGTTGTCCTCATGGTTCCATGCTATGCAGTAGAATCATTAATATCGTTGGTGAACCCATCGATAAGCGTTGATTGCGAGATTCTACGGGATTGCTATGAATCCTTTGCCATGTATTGCTTTGGAAGATACCTGGTTGCATGCTTGGGTGGGGAAGAGAGGACTATCGAGTTTATGGAAAGGGAAGGACGTGCAAGTTCTAAGACTCCCCTATTAGAATATAGTTCTGAAAAGGGAACTGTTAAGCATCCTTTTCCATTGAATTATATCTTGAAACCATGGAAACTTGGTCAATGGTTTTACCAAATTGTCAAATTTGGAATTGTTCAGTATATGTTAATTAAGTCTCTCAGTGCTATTTTAGCTGTTATCCTTGAAGCTTTTGGTGTATATTGTGAAGGAGAATTTAAATGGGGATGTGGGTATCCTTATCTTGCGGTGGTTCTAAATTTTAGTCAGTCATGGGCGTTGTACTGTCTTGTTCAATTTTACGCTGTTACAAAAGATGAACTAGCTCACATAAAACCATTAGCCAAGTTTTTGACATTTAAATCAATTGTTTTTTTGACATGGTGGCAAGGCGTGGCAATTGCTCTTCTTTATGCCCTGGGTTTGTTCAAAAGCCCTATAGCTCAAGGCTTACAGTTTAAGTCAAGTGTTCAGGACTTCATCATTTGTATAGAGATGGGCATTGCTTCTGTTGTTCACCTATATGTGTTTCCTGCAAAGCGTTATGAGCTGATGGGAGATCGTTACACTGGAAGTGTCTCAGTTCTTGGAGACTATGTATCGGCTGACAGTCCTTTGGATCCCGAGGAGGTTAGGGACAGTGAACGCCCCACGAAGCTACGCCTTCCCAATCCTGACATTGATGTCAGGAGCGGAATGACCATAAGAGAAAGTGTTCGGGACGTTTTCGTTGGTGGCGGGGAATATATTGTGAAAGATGTGAGGTTCACAGTAACACAGGCAGTAGAGCCGGTAGAGAAGGGGATCACCAGGTTCAATGAGAAGCTACACAAGATCTCCCAAAACATTAAGAGACATGACAAAGAGAAAAGAAAAACGAAAGATGACAGTTTTATAACGGCATCATCACCAGCACAGAAGTTGATTCGTGGGATAGATGACCCTCTTTTGAATGGAAGCATGAGTGACAGTGGGGTTGCAAGGGGAAAGAAGCATCGTCGAAAATCTGGATATACCAGTGCAGAAAGTGGGGGAGAGAGCAGTAGTGATCAAAGTTACAGTGGGTATCAGGTAACAGGCCGTAGGTGGGTAACCAAAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Solute_trans_a

Protein Analysis

488

Amino Acids

54.89

Weight (kDa)

8.37

Isoelectric Point (pI)

38.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011477)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38360
fragaria_vesca FvH4_2g16560 FvH4_2g16560
malus_domestica MD05G1133900.v1.1 MD10G1138900.v1.1
prunus_persica Prupe.8G177700_v2.0.a1
pyrus_communis pycom05g13070 pycom10g11810
rosa_chinensis RchiOBHm_Chr6g0280631
rosa_laevigata RLG00000013042
rosa_multiflora Rmu_sc0000976.1_g000001
rosa_roxburghii Rroxscaffold_7G00187860
rosa_rugosa Rorug06G0133000 Rorug06G0133100 Rorug06G0133200
rosa_samantha Rh6AG245600 Rh6BG248000 Rh6CG249400 Rh6DG240600
rosa_wichuraiana Rw6G021260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1256
AasI GACNNNNNNGTC 1 cut(s) 1043
AccBSI CCGCTC 1 cut(s) 1053
AciI CCGC 3 cut(s) 608, 1053, 1098
AclWI GGATC 3 cut(s) 974, 987, 1172
AcsI RAATTY 3 cut(s) 485, 575, 619
AfaI GTAC 2 cut(s) 87, 644
AfiI CCNNNNNNNGG 1 cut(s) 1447
AgsI TTSAA 8 cut(s) 108, 433, 445, 548, 656, 790, 1177, 1312
AjiI CACGTC 1 cut(s) 362
AjnI CCWGG 3 cut(s) 303, 777, 1169
AluBI AGCT 7 cut(s) 536, 551, 686, 803, 910, 1018, 1186
AluI AGCT 7 cut(s) 536, 551, 686, 803, 910, 1018, 1186
Alw21I GWGCWC 1 cut(s) 129
Alw26I GTCTC 4 cut(s) 522, 943, 945, 1207
AlwI GGATC 3 cut(s) 974, 987, 1172
Ama87I CYCGRG 1 cut(s) 983
AoxI GGCC 2 cut(s) 39, 1438
ApoI RAATTY 3 cut(s) 485, 575, 619
AseI ATTAAT 1 cut(s) 212
Asp700I GAANNNNTTC 1 cut(s) 1074
AsuHPI GGTGA 4 cut(s) 235, 869, 1159, 1260
AvaI CYCGRG 1 cut(s) 983
AxyI CCTNAGG 1 cut(s) 150
BamHI GGATCC 1 cut(s) 979
Bbv12I GWGCWC 1 cut(s) 129
BccI CCATC 3 cut(s) 238, 850, 907
BceAI ACGGC 2 cut(s) 1275, 1425
BciT130I CCWGG 3 cut(s) 305, 779, 1171
BciVI GTATCC 1 cut(s) 606
BclI TGATCA 1 cut(s) 1408
BcoDI GTCTC 4 cut(s) 522, 943, 945, 1207
BfaI CTAG 2 cut(s) 68, 683
BfmI CTRYAG 1 cut(s) 798
BfuI GTATCC 1 cut(s) 606
BglII AGATCT 1 cut(s) 1194
Bme1390I CCNGG 3 cut(s) 305, 779, 1171
BmeT110I CYCGRG 1 cut(s) 983
BmgBI CACGTC 1 cut(s) 362
BmiI GGNNCC 2 cut(s) 189, 981
BmrFI CCNGG 3 cut(s) 305, 779, 1171
BmrI ACTGGG 1 cut(s) 28
BmsI GCATC 3 cut(s) 427, 1271, 1363
BmuI ACTGGG 1 cut(s) 28
BpuEI CTTGAG 1 cut(s) 789
Bsa29I ATCGAT 2 cut(s) 21, 233
BsaAI YACGTR 1 cut(s) 57
BsaJI CCNNGG 4 cut(s) 449, 777, 778, 984
BsaWI WCCGGW 1 cut(s) 74
BsaXI ACNNNNNCTCC 6 cut(s) 146, 176, 942, 972, 1181, 1211
Bsc4I CCNNNNNNNGG 1 cut(s) 1447
Bse118I RCCGGY 1 cut(s) 1150
Bse1I ACTGG 3 cut(s) 34, 934, 1377
Bse21I CCTNAGG 1 cut(s) 150
Bse3DI GCAATG 1 cut(s) 861
BseBI CCWGG 3 cut(s) 305, 779, 1171
BseCI ATCGAT 2 cut(s) 21, 233
BseDI CCNNGG 4 cut(s) 449, 777, 778, 984
BseGI GGATG 2 cut(s) 418, 593
BseLI CCNNNNNNNGG 1 cut(s) 1447
BseMI GCAATG 1 cut(s) 861
BseMII CTCAG 3 cut(s) 141, 535, 954
BseNI ACTGG 3 cut(s) 34, 934, 1377
BseRI GAGGAG 2 cut(s) 167, 1001
BsgI GTGCAG 1 cut(s) 1401
BshFI GGCC 2 cut(s) 41, 1440
BshVI ATCGAT 2 cut(s) 21, 233
BsiHKAI GWGCWC 1 cut(s) 129
BsiHKCI CYCGRG 1 cut(s) 983
BsiSI CCGG 2 cut(s) 75, 1151
BslFI GGGAC 2 cut(s) 1010, 1094
BslI CCNNNNNNNGG 1 cut(s) 1447
BsmAI GTCTC 4 cut(s) 522, 943, 945, 1207
BsmFI GGGAC 2 cut(s) 1010, 1094
BsnI GGCC 2 cut(s) 41, 1440
BsoBI CYCGRG 1 cut(s) 983
Bsp1286I GDGCHC 1 cut(s) 129
Bsp143I GATC 6 cut(s) 22, 919, 979, 1164, 1194, 1408
Bsp19I CCATGG 1 cut(s) 449
BspACI CCGC 3 cut(s) 608, 1053, 1098
BspANI GGCC 2 cut(s) 41, 1440
BspCNI CTCAG 3 cut(s) 142, 534, 953
BspDI ATCGAT 2 cut(s) 21, 233
BspLI GGNNCC 2 cut(s) 189, 981
BspPI GGATC 3 cut(s) 974, 987, 1172
BspQI GCTCTTC 1 cut(s) 771
BsrBI CCGCTC 1 cut(s) 1053
BsrDI GCAATG 1 cut(s) 861
BsrFI RCCGGY 1 cut(s) 1150
BsrI ACTGG 3 cut(s) 34, 934, 1377
BssAI RCCGGY 1 cut(s) 1150
BssECI CCNNGG 4 cut(s) 449, 777, 778, 984
BssMI GATC 6 cut(s) 22, 919, 979, 1164, 1194, 1408
BssT1I CCWWGG 1 cut(s) 449
Bst2UI CCWGG 3 cut(s) 305, 779, 1171
Bst4CI ACNGT 9 cut(s) 412, 647, 816, 971, 1001, 1132, 1250, 1331, 1421
Bst6I CTCTTC 2 cut(s) 321, 771
BstBAI YACGTR 1 cut(s) 57
BstC8I GCNNGC 1 cut(s) 313
BstDEI CTNAG 4 cut(s) 150, 372, 521, 940
BstDSI CCRYGG 1 cut(s) 449
BstEII GGTNACC 1 cut(s) 1450
BstF5I GGATG 2 cut(s) 418, 593
BstKTI GATC 6 cut(s) 25, 922, 982, 1167, 1197, 1411
BstMAI GTCTC 4 cut(s) 522, 943, 945, 1207
BstMBI GATC 6 cut(s) 22, 919, 979, 1164, 1194, 1408
BstMWI GCNNNNNNNGC 3 cut(s) 246, 533, 907
BstNI CCWGG 3 cut(s) 305, 779, 1171
BstNSI RCATGY 1 cut(s) 315
BstPI GGTNACC 1 cut(s) 1450
BstSCI CCNGG 3 cut(s) 303, 777, 1169
BstSFI CTRYAG 1 cut(s) 798
BstX2I RGATCY 2 cut(s) 979, 1194
BstYI RGATCY 2 cut(s) 979, 1194
Bsu15I ATCGAT 2 cut(s) 21, 233
Bsu36I CCTNAGG 1 cut(s) 150
BsuI GTATCC 1 cut(s) 606
BsuRI GGCC 2 cut(s) 41, 1440
BsuTUI ATCGAT 2 cut(s) 21, 233
BtgI CCRYGG 1 cut(s) 449
BtrI CACGTC 1 cut(s) 362
BtsCI GGATG 2 cut(s) 418, 593
BtsIMutI CAGTG 6 cut(s) 529, 927, 1006, 1336, 1384, 1426
Cac8I GCNNGC 1 cut(s) 313
Cfr10I RCCGGY 1 cut(s) 1150
ClaI ATCGAT 2 cut(s) 21, 233
CsiI ACCWGGT 2 cut(s) 303, 1169
Csp6I GTAC 2 cut(s) 86, 643
CviAII CATG 9 cut(s) 184, 192, 283, 312, 450, 633, 741, 1217, 1321
CviQI GTAC 2 cut(s) 86, 643
DdeI CTNAG 4 cut(s) 150, 372, 521, 940
DpnI GATC 6 cut(s) 24, 921, 981, 1166, 1196, 1410
DpnII GATC 6 cut(s) 22, 919, 979, 1164, 1194, 1408
DraI TTTAAA 2 cut(s) 580, 721
DrdI GACNNNNNNGTC 1 cut(s) 1043
DseDI GACNNNNNNGTC 1 cut(s) 1043
Eam1104I CTCTTC 2 cut(s) 321, 771
EarI CTCTTC 2 cut(s) 321, 771
Eco130I CCWWGG 1 cut(s) 449
Eco81I CCTNAGG 1 cut(s) 150
Eco88I CYCGRG 1 cut(s) 983
Eco91I GGTNACC 1 cut(s) 1450
EcoO65I GGTNACC 1 cut(s) 1450
EcoRII CCWGG 3 cut(s) 303, 777, 1169
EcoT14I CCWWGG 1 cut(s) 449
ErhI CCWWGG 1 cut(s) 449
FaeI CATG 9 cut(s) 187, 195, 286, 315, 453, 636, 744, 1220, 1324
FaqI GGGAC 2 cut(s) 1010, 1094
FatI CATG 9 cut(s) 183, 191, 282, 311, 449, 632, 740, 1216, 1320
FauI CCCGC 1 cut(s) 1091
FbaI TGATCA 1 cut(s) 1408
FokI GGATG 2 cut(s) 405, 600
FspBI CTAG 2 cut(s) 68, 683
HaeIII GGCC 2 cut(s) 41, 1440
HapII CCGG 2 cut(s) 75, 1151
Hin1II CATG 9 cut(s) 187, 195, 286, 315, 453, 636, 744, 1220, 1324
HindIII AAGCTT 1 cut(s) 549
HinfI GANTC 5 cut(s) 206, 253, 272, 376, 1285
HpaII CCGG 2 cut(s) 75, 1151
HphI GGTGA 4 cut(s) 235, 869, 1159, 1260
Hpy166II GTNNAC 4 cut(s) 226, 877, 1004, 1128
Hpy188I TCNGA 1 cut(s) 400
Hpy188III TCNNGA 8 cut(s) 149, 442, 833, 983, 1034, 1048, 1079, 1368
Hpy8I GTNNAC 4 cut(s) 226, 877, 1004, 1128
Hpy99I CGWCG 1 cut(s) 1362
HpyAV CCTTC 4 cut(s) 350, 563, 1034, 1153
HpyCH4III ACNGT 9 cut(s) 412, 647, 816, 971, 1001, 1132, 1250, 1331, 1421
HpyCH4IV ACGT 3 cut(s) 56, 361, 1083
HpyCH4V TGCA 7 cut(s) 137, 200, 311, 365, 896, 1340, 1382
HpyF10VI GCNNNNNNNGC 3 cut(s) 246, 533, 907
HpyF3I CTNAG 4 cut(s) 150, 372, 521, 940
HpySE526I ACGT 3 cut(s) 56, 361, 1083
Hsp92II CATG 9 cut(s) 187, 195, 286, 315, 453, 636, 744, 1220, 1324
Ksp22I TGATCA 1 cut(s) 1408
Kzo9I GATC 6 cut(s) 22, 919, 979, 1164, 1194, 1408
LguI GCTCTTC 1 cut(s) 771
LmnI GCTCC 2 cut(s) 154, 1050
LweI GCATC 3 cut(s) 427, 1271, 1363
MabI ACCWGGT 2 cut(s) 303, 1169
MaeI CTAG 2 cut(s) 68, 683
MaeII ACGT 3 cut(s) 56, 361, 1083
MaeIII GTNAC 7 cut(s) 667, 923, 1132, 1325, 1415, 1432, 1450
MalI GATC 6 cut(s) 24, 921, 981, 1166, 1196, 1410
MbiI CCGCTC 1 cut(s) 1053
MboI GATC 6 cut(s) 22, 919, 979, 1164, 1194, 1408
MboII GAAGA 4 cut(s) 16, 309, 338, 758
MfeI CAATTG 2 cut(s) 726, 759
MflI RGATCY 2 cut(s) 979, 1194
MhlI GDGCHC 1 cut(s) 129
MlyI GAGTC 1 cut(s) 370
MnlI CCTC 8 cut(s) 60, 145, 191, 324, 979, 982, 1116, 1314
MroXI GAANNNNTTC 1 cut(s) 1074
MseI TTAA 9 cut(s) 167, 212, 414, 509, 513, 579, 720, 819, 1209
MslI CAYNNNNRTG 1 cut(s) 882
MspI CCGG 2 cut(s) 75, 1151
MspR9I CCNGG 3 cut(s) 305, 779, 1171
MunI CAATTG 2 cut(s) 726, 759
MvaI CCWGG 3 cut(s) 305, 779, 1171
MwoI GCNNNNNNNGC 3 cut(s) 246, 533, 907
NcoI CCATGG 1 cut(s) 449
NdeII GATC 6 cut(s) 22, 919, 979, 1164, 1194, 1408
NlaIII CATG 9 cut(s) 187, 195, 286, 315, 453, 636, 744, 1220, 1324
NlaIV GGNNCC 2 cut(s) 189, 981
NmuCI GTSAC 1 cut(s) 1325
NspI RCATGY 1 cut(s) 315
PacI TTAATTAA 1 cut(s) 513
PaeI GCATGC 1 cut(s) 315
PasI CCCWGGG 1 cut(s) 778
PciSI GCTCTTC 1 cut(s) 771
PdmI GAANNNNTTC 1 cut(s) 1074
PfeI GAWTC 4 cut(s) 206, 253, 272, 1285
PleI GAGTC 1 cut(s) 370
PpsI GAGTC 1 cut(s) 370
Ppu21I YACGTR 1 cut(s) 57
PshBI ATTAAT 1 cut(s) 212
PsiI TTATAA 1 cut(s) 1256
Psp6I CCWGG 3 cut(s) 303, 777, 1169
PspEI GGTNACC 1 cut(s) 1450
PspGI CCWGG 3 cut(s) 303, 777, 1169
PspN4I GGNNCC 2 cut(s) 189, 981
PsuI RGATCY 2 cut(s) 979, 1194
RsaI GTAC 2 cut(s) 87, 644
RsaNI GTAC 2 cut(s) 86, 643
RseI CAYNNNNRTG 1 cut(s) 882
SapI GCTCTTC 1 cut(s) 771
SaqAI TTAA 9 cut(s) 167, 212, 414, 509, 513, 579, 720, 819, 1209
Sau3AI GATC 6 cut(s) 22, 919, 979, 1164, 1194, 1408
SchI GAGTC 1 cut(s) 370
ScrFI CCNGG 3 cut(s) 305, 779, 1171
SduI GDGCHC 1 cut(s) 129
SexAI ACCWGGT 2 cut(s) 303, 1169
SfaNI GCATC 3 cut(s) 427, 1271, 1363
SfcI CTRYAG 1 cut(s) 798
SmiI ATTTAAAT 2 cut(s) 580, 721
SmiMI CAYNNNNRTG 1 cut(s) 882
SmlI CTYRAG 1 cut(s) 804
SmoI CTYRAG 1 cut(s) 804
SphI GCATGC 1 cut(s) 315
SsiI CCGC 3 cut(s) 608, 1053, 1098
SspMI CTAG 2 cut(s) 68, 683
StyD4I CCNGG 3 cut(s) 303, 777, 1169
StyI CCWWGG 1 cut(s) 449
SwaI ATTTAAAT 2 cut(s) 580, 721
TaaI ACNGT 9 cut(s) 412, 647, 816, 971, 1001, 1132, 1250, 1331, 1421
TaiI ACGT 3 cut(s) 59, 364, 1086
TaqI TCGA 4 cut(s) 21, 233, 339, 1360
TatI WGTACW 2 cut(s) 85, 642
TfiI GAWTC 4 cut(s) 206, 253, 272, 1285
Tru1I TTAA 9 cut(s) 167, 212, 414, 509, 513, 579, 720, 819, 1209
Tru9I TTAA 9 cut(s) 167, 212, 414, 509, 513, 579, 720, 819, 1209
TscAI CASTG 6 cut(s) 529, 934, 1006, 1336, 1384, 1426
TseFI GTSAC 1 cut(s) 1325
Tsp45I GTSAC 1 cut(s) 1325
TspDTI ATGAA 4 cut(s) 17, 285, 693, 829
TspRI CASTG 6 cut(s) 529, 934, 1006, 1336, 1384, 1426
VspI ATTAAT 1 cut(s) 212
XapI RAATTY 3 cut(s) 485, 575, 619
XceI RCATGY 1 cut(s) 315
XmnI GAANNNNTTC 1 cut(s) 1074
XspI CTAG 2 cut(s) 68, 683
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.