RLG00000013042

Transmembrane protein 184 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0011477
Physical Location & Seq
Forward (+)
25324219 .. 25327205
2987 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013042

Sequence Viewer

Length: 1122 bp
ATGGAAAGACAAGGACGAGCAAGTAATAAGACTCCCCTATTATTAGACAGTTCTGGAACGGGAACTGTCACGCATCCTTTTCCAATGAACTTAATCTTGAAACCATGGAAACTTGGTCAAGGATTTTACCAACTTGTCAAATTCGGAATCGTTCAGTATATGATATTCAAGTCTCTCAGTGCTATTCTAGCAGTTATCCTTGAAGCTTTTGGTGTATACTGTGATGGAGAATTTAAATGGGGATGTGGGTATCCTTATATTGCAGTGATTCTAAATTTTAGTCAGTCATGGGCTTTGTACTGTCTTGTTCAGTTTTACGCCGTTACAAAAGATGAACTAGCTCATATAAAGCCATTATACAAGTTTCTGACTTTTAAGTCGATTGTGTTCTTGACATGGTGGCAAGGTGTGGCAATTGCTCTTCTCTATGCTCTCGGTTTGTTCAAAAGTCCTATAGCTCAAGGCTTGCAATTTAAGTCAAGTGTTCAAGACTTCATCATTTGTATAGAGATGTGCATTGCTTCTGTTGTTCACCTGTATGTTTTTCCTGCAAAGCCTTATGAACTGATGGGAGATCGCTTCCCCGGGAGTGTCTCGGTTCTTGGAGACTATGTATCTGCTGACTGTCCTTTGGATCCCGATGAAGTAAGGGACAGTGAACGTCCCACAAAGCTACGCCTTCCCACTCCTGACATTGATGTTAGGAGCGGAATGACCATAAGAGAAAGCGTTCGGGATGTTTTTATCGGGGGTGGGGGATATATTGTTAGCGATGTGAAGTTTACCGTAACACAGGCAGTTGAGCCTGTAGAGAAGGGGTTAACAAGGTTCAACGAGAAGCTACACAAGATATCTCAAAACATTAAGAGACATGACAAGGAGAAGAGGAAAACAAAGGATGACAGTTGTATTTCCACATCGTCACCTGTAGGGAAGGTGATTCGTGGTATAGATGACCCTCTCTTGAATGGAGGAAGTATGAGCGATAGTGGTGTATCAAGGGCAAAGAAGCATCGCCGAAAATCAGGTTATACGAGTGCAGAAAGTGGCGGAGAGAGCAGCAGTGACCAAAGTTATGGTGGGTATCAGGTCAGAGGCCGCAGGTGGGTTACCAAAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Solute_trans_a

Protein Analysis

374

Amino Acids

41.6

Weight (kDa)

9.11

Isoelectric Point (pI)

40.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Solute_trans_a PF03619 18 - 187 2.3e-59 Organic solute transporter Ostalpha
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011477)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38360
fragaria_vesca FvH4_2g16560 FvH4_2g16560
malus_domestica MD05G1133900.v1.1 MD10G1138900.v1.1
prunus_persica Prupe.8G177700_v2.0.a1
pyrus_communis pycom05g13070 pycom10g11810
rosa_chinensis RchiOBHm_Chr6g0280631
rosa_laevigata RLG00000013042
rosa_multiflora Rmu_sc0000976.1_g000001
rosa_roxburghii Rroxscaffold_7G00187860
rosa_rugosa Rorug06G0133000 Rorug06G0133100 Rorug06G0133200
rosa_samantha Rh6AG245600 Rh6BG248000 Rh6CG249400 Rh6DG240600
rosa_wichuraiana Rw6G021260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1092
AasI GACNNNNNNGTC 1 cut(s) 376
Acc36I ACCTGC 1 cut(s) 1092
AccBSI CCGCTC 1 cut(s) 708
AccI GTMKAC 1 cut(s) 216
AciI CCGC 3 cut(s) 708, 1050, 1099
AclWI GGATC 2 cut(s) 629, 642
AcsI RAATTY 3 cut(s) 140, 230, 274
AfaI GTAC 1 cut(s) 299
AfiI CCNNNNNNNGG 1 cut(s) 1105
AgsI TTSAA 7 cut(s) 100, 169, 203, 445, 488, 832, 967
AluBI AGCT 5 cut(s) 206, 341, 458, 673, 841
AluI AGCT 5 cut(s) 206, 341, 458, 673, 841
Alw26I GTCTC 4 cut(s) 177, 598, 600, 862
AlwI GGATC 2 cut(s) 629, 642
Ama87I CYCGRG 1 cut(s) 584
AoxI GGCC 1 cut(s) 1096
ApeKI GCWGC 1 cut(s) 1059
ApoI RAATTY 3 cut(s) 140, 230, 274
Asp700I GAANNNNTTC 1 cut(s) 729
AsuC2I CCSGG 2 cut(s) 585, 586
AsuHPI GGTGA 3 cut(s) 524, 915, 949
AvaI CYCGRG 1 cut(s) 584
BamHI GGATCC 1 cut(s) 634
BbvI GCAGC 1 cut(s) 1071
BccI CCATC 2 cut(s) 218, 562
BceAI ACGGC 1 cut(s) 305
BciVI GTATCC 1 cut(s) 261
BcnI CCSGG 2 cut(s) 585, 586
BcoDI GTCTC 4 cut(s) 177, 598, 600, 862
BfaI CTAG 2 cut(s) 188, 338
BfmI CTRYAG 3 cut(s) 453, 807, 927
BfuAI ACCTGC 1 cut(s) 1092
BfuI GTATCC 1 cut(s) 261
BisI GCNGC 2 cut(s) 1060, 1099
BlsI GCNGC 2 cut(s) 1061, 1100
Bme1390I CCNGG 2 cut(s) 585, 586
BmeT110I CYCGRG 1 cut(s) 584
BmiI GGNNCC 1 cut(s) 636
BmrFI CCNGG 2 cut(s) 585, 586
BmsI GCATC 2 cut(s) 82, 1021
BpuEI CTTGAG 1 cut(s) 444
BpuMI CCSGG 2 cut(s) 585, 586
BsaJI CCNNGG 3 cut(s) 104, 583, 584
BsaXI ACNNNNNCTCC 2 cut(s) 597, 627
Bsc4I CCNNNNNNNGG 1 cut(s) 1105
Bse3DI GCAATG 1 cut(s) 516
BseDI CCNNGG 3 cut(s) 104, 583, 584
BseGI GGATG 4 cut(s) 73, 248, 742, 904
BseLI CCNNNNNNNGG 1 cut(s) 1105
BseMI GCAATG 1 cut(s) 516
BseMII CTCAG 1 cut(s) 190
BseXI GCAGC 1 cut(s) 1071
BsgI GTGCAG 1 cut(s) 1059
BshFI GGCC 1 cut(s) 1098
BsiHKCI CYCGRG 1 cut(s) 584
BsiSI CCGG 1 cut(s) 585
BslFI GGGAC 2 cut(s) 648, 665
BslI CCNNNNNNNGG 1 cut(s) 1105
BsmAI GTCTC 4 cut(s) 177, 598, 600, 862
BsmFI GGGAC 2 cut(s) 648, 665
BsnI GGCC 1 cut(s) 1098
BsoBI CYCGRG 1 cut(s) 584
Bsp143I GATC 2 cut(s) 574, 634
Bsp19I CCATGG 1 cut(s) 104
BspACI CCGC 3 cut(s) 708, 1050, 1099
BspANI GGCC 1 cut(s) 1098
BspCNI CTCAG 1 cut(s) 189
BspLI GGNNCC 1 cut(s) 636
BspMI ACCTGC 1 cut(s) 1092
BspPI GGATC 2 cut(s) 629, 642
BspQI GCTCTTC 1 cut(s) 426
BsrBI CCGCTC 1 cut(s) 708
BsrDI GCAATG 1 cut(s) 516
BssECI CCNNGG 3 cut(s) 104, 583, 584
BssMI GATC 2 cut(s) 574, 634
BssNAI GTATAC 1 cut(s) 217
BssT1I CCWWGG 1 cut(s) 104
Bst1107I GTATAC 1 cut(s) 217
Bst4CI ACNGT 8 cut(s) 50, 67, 221, 302, 626, 656, 787, 905
Bst6I CTCTTC 2 cut(s) 426, 878
BstC8I GCNNGC 1 cut(s) 467
BstDEI CTNAG 1 cut(s) 176
BstDSI CCRYGG 1 cut(s) 104
BstEII GGTNACC 1 cut(s) 1108
BstF5I GGATG 4 cut(s) 73, 248, 742, 904
BstKTI GATC 2 cut(s) 577, 637
BstMAI GTCTC 4 cut(s) 177, 598, 600, 862
BstMBI GATC 2 cut(s) 574, 634
BstMWI GCNNNNNNNGC 2 cut(s) 188, 1056
BstPI GGTNACC 1 cut(s) 1108
BstSCI CCNGG 2 cut(s) 583, 584
BstSFI CTRYAG 3 cut(s) 453, 807, 927
BstV1I GCAGC 1 cut(s) 1071
BstX2I RGATCY 1 cut(s) 634
BstXI CCANNNNNNTGG 1 cut(s) 1076
BstYI RGATCY 1 cut(s) 634
BstZ17I GTATAC 1 cut(s) 217
BsuI GTATCC 1 cut(s) 261
BsuRI GGCC 1 cut(s) 1098
BtgI CCRYGG 1 cut(s) 104
BtgZI GCGATG 2 cut(s) 786, 998
BtsCI GGATG 4 cut(s) 73, 248, 742, 904
BtsI GCAGTG 2 cut(s) 270, 1069
BtsIMutI CAGTG 4 cut(s) 184, 270, 661, 1069
BveI ACCTGC 1 cut(s) 1092
Cac8I GCNNGC 1 cut(s) 467
Cfr9I CCCGGG 1 cut(s) 584
Csp6I GTAC 1 cut(s) 298
CviAII CATG 4 cut(s) 105, 288, 396, 872
CviQI GTAC 1 cut(s) 298
DdeI CTNAG 1 cut(s) 176
DpnI GATC 2 cut(s) 576, 636
DpnII GATC 2 cut(s) 574, 634
DraI TTTAAA 1 cut(s) 235
DrdI GACNNNNNNGTC 1 cut(s) 376
DseDI GACNNNNNNGTC 1 cut(s) 376
Eam1104I CTCTTC 2 cut(s) 426, 878
EarI CTCTTC 2 cut(s) 426, 878
EciI GGCGGA 1 cut(s) 1065
Eco130I CCWWGG 1 cut(s) 104
Eco32I GATATC 1 cut(s) 852
Eco88I CYCGRG 1 cut(s) 584
Eco91I GGTNACC 1 cut(s) 1108
EcoO65I GGTNACC 1 cut(s) 1108
EcoRV GATATC 1 cut(s) 852
EcoT14I CCWWGG 1 cut(s) 104
ErhI CCWWGG 1 cut(s) 104
FaeI CATG 4 cut(s) 108, 291, 399, 875
FaqI GGGAC 2 cut(s) 648, 665
FatI CATG 4 cut(s) 104, 287, 395, 871
FblI GTMKAC 1 cut(s) 216
Fnu4HI GCNGC 2 cut(s) 1060, 1099
FokI GGATG 4 cut(s) 60, 255, 749, 911
Fsp4HI GCNGC 2 cut(s) 1060, 1099
FspBI CTAG 2 cut(s) 188, 338
GluI GCNGC 2 cut(s) 1060, 1099
HaeIII GGCC 1 cut(s) 1098
HapII CCGG 1 cut(s) 585
Hin1II CATG 4 cut(s) 108, 291, 399, 875
HincII GTYRAC 1 cut(s) 822
HindII GTYRAC 1 cut(s) 822
HindIII AAGCTT 1 cut(s) 204
HinfI GANTC 4 cut(s) 31, 147, 268, 940
HpaI GTTAAC 1 cut(s) 822
HpaII CCGG 1 cut(s) 585
HphI GGTGA 3 cut(s) 524, 915, 949
Hpy166II GTNNAC 5 cut(s) 217, 532, 659, 783, 822
Hpy188I TCNGA 3 cut(s) 146, 369, 1094
Hpy188III TCNNGA 8 cut(s) 54, 97, 391, 488, 638, 689, 734, 964
Hpy8I GTNNAC 5 cut(s) 217, 532, 659, 783, 822
HpyAV CCTTC 3 cut(s) 689, 808, 928
HpyCH4III ACNGT 8 cut(s) 50, 67, 221, 302, 626, 656, 787, 905
HpyCH4IV ACGT 1 cut(s) 661
HpyCH4V TGCA 5 cut(s) 263, 469, 516, 551, 1040
HpyF10VI GCNNNNNNNGC 2 cut(s) 188, 1056
HpyF3I CTNAG 1 cut(s) 176
HpySE526I ACGT 1 cut(s) 661
Hsp92II CATG 4 cut(s) 108, 291, 399, 875
KspAI GTTAAC 1 cut(s) 822
Kzo9I GATC 2 cut(s) 574, 634
LguI GCTCTTC 1 cut(s) 426
LmnI GCTCC 1 cut(s) 705
Lsp1109I GCAGC 1 cut(s) 1071
LweI GCATC 2 cut(s) 82, 1021
MaeI CTAG 2 cut(s) 188, 338
MaeII ACGT 1 cut(s) 661
MaeIII GTNAC 6 cut(s) 67, 322, 787, 921, 1064, 1108
MalI GATC 2 cut(s) 576, 636
MbiI CCGCTC 1 cut(s) 708
MboI GATC 2 cut(s) 574, 634
MboII GAAGA 2 cut(s) 413, 895
MfeI CAATTG 1 cut(s) 414
MflI RGATCY 1 cut(s) 634
MluCI AATT 5 cut(s) 140, 230, 274, 414, 470
MlyI GAGTC 1 cut(s) 25
MnlI CCTC 4 cut(s) 879, 965, 969, 1088
MroXI GAANNNNTTC 1 cut(s) 729
MseI TTAA 7 cut(s) 92, 234, 375, 474, 821, 864, 1120
MslI CAYNNNNRTG 1 cut(s) 537
MspI CCGG 1 cut(s) 585
MspR9I CCNGG 2 cut(s) 585, 586
MunI CAATTG 1 cut(s) 414
MwoI GCNNNNNNNGC 2 cut(s) 188, 1056
NciI CCSGG 2 cut(s) 585, 586
NcoI CCATGG 1 cut(s) 104
NdeII GATC 2 cut(s) 574, 634
NlaIII CATG 4 cut(s) 108, 291, 399, 875
NlaIV GGNNCC 1 cut(s) 636
NmuCI GTSAC 3 cut(s) 67, 921, 1064
PaqCI CACCTGC 1 cut(s) 1092
PciSI GCTCTTC 1 cut(s) 426
PdmI GAANNNNTTC 1 cut(s) 729
PfeI GAWTC 3 cut(s) 147, 268, 940
PkrI GCNGC 2 cut(s) 1061, 1100
PleI GAGTC 1 cut(s) 25
PpsI GAGTC 1 cut(s) 25
PspEI GGTNACC 1 cut(s) 1108
PspN4I GGNNCC 1 cut(s) 636
PsuI RGATCY 1 cut(s) 634
RsaI GTAC 1 cut(s) 299
RsaNI GTAC 1 cut(s) 298
RseI CAYNNNNRTG 1 cut(s) 537
SapI GCTCTTC 1 cut(s) 426
SaqAI TTAA 7 cut(s) 92, 234, 375, 474, 821, 864, 1120
SatI GCNGC 2 cut(s) 1060, 1099
Sau3AI GATC 2 cut(s) 574, 634
SchI GAGTC 1 cut(s) 25
ScrFI CCNGG 2 cut(s) 585, 586
SfaNI GCATC 2 cut(s) 82, 1021
SfcI CTRYAG 3 cut(s) 453, 807, 927
SmaI CCCGGG 1 cut(s) 586
SmiI ATTTAAAT 1 cut(s) 235
SmiMI CAYNNNNRTG 1 cut(s) 537
SmlI CTYRAG 1 cut(s) 459
SmoI CTYRAG 1 cut(s) 459
Sse9I AATT 5 cut(s) 140, 230, 274, 414, 470
SsiI CCGC 3 cut(s) 708, 1050, 1099
SspMI CTAG 2 cut(s) 188, 338
StyD4I CCNGG 2 cut(s) 583, 584
StyI CCWWGG 1 cut(s) 104
SwaI ATTTAAAT 1 cut(s) 235
TaaI ACNGT 8 cut(s) 50, 67, 221, 302, 626, 656, 787, 905
TaiI ACGT 1 cut(s) 664
TaqI TCGA 1 cut(s) 380
TasI AATT 5 cut(s) 140, 230, 274, 414, 470
TatI WGTACW 1 cut(s) 297
TauI GCSGC 1 cut(s) 1101
TfiI GAWTC 3 cut(s) 147, 268, 940
Tru1I TTAA 7 cut(s) 92, 234, 375, 474, 821, 864, 1120
Tru9I TTAA 7 cut(s) 92, 234, 375, 474, 821, 864, 1120
TscAI CASTG 4 cut(s) 184, 270, 661, 1069
TseFI GTSAC 3 cut(s) 67, 921, 1064
TseI GCWGC 1 cut(s) 1059
Tsp45I GTSAC 3 cut(s) 67, 921, 1064
TspDTI ATGAA 5 cut(s) 101, 348, 484, 576, 657
TspMI CCCGGG 1 cut(s) 584
TspRI CASTG 4 cut(s) 184, 270, 661, 1069
XapI RAATTY 3 cut(s) 140, 230, 274
XcmI CCANNNNNNNNNTGG 1 cut(s) 1076
XmaI CCCGGG 1 cut(s) 584
XmiI GTMKAC 1 cut(s) 216
XmnI GAANNNNTTC 1 cut(s) 729
XspI CTAG 2 cut(s) 188, 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.