Rorug06G0133100

Transmembrane protein 184 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0011477
Physical Location & Seq
Reverse (-)
18845330 .. 18846140
811 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0133100.1

Sequence Viewer

Length: 741 bp
ATGATCAATCATGGAGGAGAGAGATGTCCCCTAGAGACGGAGGAAGAAGTGGCGTCGCTTGAGGGCTCTGGTCAGCCTCCGACAGCGGGGCCTTCCATCCCAGCCCTTGTTTTTAGGGCCAATGTTCAAACTACGGTTCCTTCTTCTCTTTTCCCGGCATTTAAATTACCTAATTTGCTGAAAAGGAGGACAGTGCAGATCCGGTCCTTACCGGAGGAAGTGGAAGTGCCCATATCTGAAGGGACCTCTGCCCAGGGCCAACTTACTGGTGTGCGACGCCAGAGAGAAGAAGAGCTACTGGCTGATGGCAAAAAAGCCAAGCATAGTCTAGCTTTAGTTTTGGTCGGGTTACAGCCGGAGAACCTCGGCTTCGATGTTTCTTCTGAGGGATTGTTTGAAGTGTCCATTACCTCGGCTCTAAAGGTGTACAAGAAACGAGGCAGCCCCCGTGGGAAGAGAAACGCGACTAAGCCGCCTCTGACAGCCTCTGTCTATGCCGACTCTGAATCTGGTATGTCTGTTGTTTCTGAGGGCGGATCTGGGGGTCAACATGCAGTTGGTGGTGGCCTCGGTGATGGAGTCTCTTTCCCGCTCTGGCTAGGAGTAGTAGGCCTACAAACCTTGGGCGAGAGCGGTACTGCTTTGCTTGCTCACGTCGTACACCAAGATGGTCTTAGGCTACAAGAATGGTCATGGCAGGGCTTCAGCTTAGGGTGCAATAAGCATGTTCATGCAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Solute_trans_a

Protein Analysis

246

Amino Acids

25.99

Weight (kDa)

6.39

Isoelectric Point (pI)

56.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011477)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38360
fragaria_vesca FvH4_2g16560 FvH4_2g16560
malus_domestica MD05G1133900.v1.1 MD10G1138900.v1.1
prunus_persica Prupe.8G177700_v2.0.a1
pyrus_communis pycom05g13070 pycom10g11810
rosa_chinensis RchiOBHm_Chr6g0280631
rosa_laevigata RLG00000013042
rosa_multiflora Rmu_sc0000976.1_g000001
rosa_roxburghii Rroxscaffold_7G00187860
rosa_rugosa Rorug06G0133000 Rorug06G0133100 Rorug06G0133200
rosa_samantha Rh6AG245600 Rh6BG248000 Rh6CG249400 Rh6DG240600
rosa_wichuraiana Rw6G021260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 592, 633
AccII CGCG 1 cut(s) 464
AciI CCGC 5 cut(s) 86, 473, 534, 590, 633
AclWI GGATC 2 cut(s) 193, 544
AcuI CTGAAG 2 cut(s) 258, 688
AcyI GRCGYC 2 cut(s) 53, 277
AfaI GTAC 3 cut(s) 428, 637, 660
AfiI CCNNNNNNNGG 2 cut(s) 37, 86
AgsI TTSAA 2 cut(s) 128, 398
AjiI CACGTC 1 cut(s) 655
AjnI CCWGG 1 cut(s) 252
AluBI AGCT 3 cut(s) 295, 332, 708
AluI AGCT 3 cut(s) 295, 332, 708
Alw26I GTCTC 2 cut(s) 29, 586
AlwI GGATC 2 cut(s) 193, 544
AlwNI CAGNNNCTG 1 cut(s) 488
AoxI GGCC 5 cut(s) 89, 117, 256, 565, 610
ApeKI GCWGC 1 cut(s) 441
AspS9I GGNCC 5 cut(s) 89, 117, 204, 243, 256
AsuC2I CCSGG 1 cut(s) 155
AsuHPI GGTGA 1 cut(s) 584
AvaII GGWCC 2 cut(s) 204, 243
BaeGI GKGCMC 1 cut(s) 231
BanII GRGCYC 1 cut(s) 68
BarI GAAGNNNNNNTAC 2 cut(s) 279, 311
BbvI GCAGC 1 cut(s) 453
BccI CCATC 4 cut(s) 104, 299, 569, 662
BciT130I CCWGG 1 cut(s) 254
BclI TGATCA 1 cut(s) 3
BcnI CCSGG 1 cut(s) 155
BcoDI GTCTC 2 cut(s) 29, 586
BfaI CTAG 3 cut(s) 32, 329, 599
BisI GCNGC 2 cut(s) 442, 473
BlsI GCNGC 2 cut(s) 443, 474
Bme1390I CCNGG 2 cut(s) 155, 254
Bme18I GGWCC 2 cut(s) 204, 243
BmgBI CACGTC 1 cut(s) 655
BmgT120I GGNCC 5 cut(s) 89, 117, 204, 243, 256
BmiI GGNNCC 3 cut(s) 90, 138, 244
BmrFI CCNGG 2 cut(s) 155, 254
Bpu10I CCTNAGC 1 cut(s) 709
BpuEI CTTGAG 1 cut(s) 80
BpuMI CCSGG 1 cut(s) 155
BsaHI GRCGYC 2 cut(s) 53, 277
BsaJI CCNNGG 7 cut(s) 252, 253, 364, 411, 448, 568, 621
BsaWI WCCGGW 2 cut(s) 201, 211
Bsc4I CCNNNNNNNGG 2 cut(s) 37, 86
Bse1I ACTGG 2 cut(s) 271, 303
BseBI CCWGG 1 cut(s) 254
BseDI CCNNGG 7 cut(s) 252, 253, 364, 411, 448, 568, 621
BseGI GGATG 1 cut(s) 96
BseLI CCNNNNNNNGG 2 cut(s) 37, 86
BseMII CTCAG 2 cut(s) 375, 519
BseNI ACTGG 2 cut(s) 271, 303
BseRI GAGGAG 1 cut(s) 30
BseSI GKGCMC 1 cut(s) 231
BseXI GCAGC 1 cut(s) 453
BseYI CCCAGC 1 cut(s) 100
BsgI GTGCAG 1 cut(s) 215
Bsh1236I CGCG 1 cut(s) 464
BshFI GGCC 5 cut(s) 91, 119, 258, 567, 612
BsiSI CCGG 4 cut(s) 155, 202, 212, 356
BslFI GGGAC 2 cut(s) 12, 256
BslI CCNNNNNNNGG 2 cut(s) 37, 86
BsmAI GTCTC 2 cut(s) 29, 586
BsmBI CGTCTC 1 cut(s) 29
BsmFI GGGAC 2 cut(s) 12, 256
BsnI GGCC 5 cut(s) 91, 119, 258, 567, 612
Bsp1286I GDGCHC 2 cut(s) 68, 231
Bsp1407I TGTACA 1 cut(s) 426
Bsp143I GATC 3 cut(s) 3, 198, 536
BspACI CCGC 5 cut(s) 86, 473, 534, 590, 633
BspANI GGCC 5 cut(s) 91, 119, 258, 567, 612
BspCNI CTCAG 2 cut(s) 376, 520
BspFNI CGCG 1 cut(s) 464
BspLI GGNNCC 3 cut(s) 90, 138, 244
BspPI GGATC 2 cut(s) 193, 544
BspQI GCTCTTC 1 cut(s) 285
BsrBI CCGCTC 2 cut(s) 592, 633
BsrGI TGTACA 1 cut(s) 426
BsrI ACTGG 2 cut(s) 271, 303
BssECI CCNNGG 7 cut(s) 252, 253, 364, 411, 448, 568, 621
BssMI GATC 3 cut(s) 3, 198, 536
BssNI GRCGYC 2 cut(s) 53, 277
BssT1I CCWWGG 1 cut(s) 621
Bst2UI CCWGG 1 cut(s) 254
Bst4CI ACNGT 2 cut(s) 136, 193
Bst6I CTCTTC 2 cut(s) 285, 449
BstACI GRCGYC 2 cut(s) 53, 277
BstAUI TGTACA 1 cut(s) 426
BstC8I GCNNGC 1 cut(s) 648
BstDEI CTNAG 5 cut(s) 384, 468, 528, 674, 709
BstDSI CCRYGG 1 cut(s) 448
BstF5I GGATG 1 cut(s) 96
BstFNI CGCG 1 cut(s) 464
BstKTI GATC 3 cut(s) 6, 201, 539
BstMAI GTCTC 2 cut(s) 29, 586
BstMBI GATC 3 cut(s) 3, 198, 536
BstMWI GCNNNNNNNGC 2 cut(s) 647, 714
BstNI CCWGG 1 cut(s) 254
BstNSI RCATGY 2 cut(s) 554, 728
BstSCI CCNGG 2 cut(s) 153, 252
BstSLI GKGCMC 1 cut(s) 231
BstUI CGCG 1 cut(s) 464
BstV1I GCAGC 1 cut(s) 453
BstX2I RGATCY 2 cut(s) 198, 536
BstXI CCANNNNNNTGG 1 cut(s) 266
BstYI RGATCY 2 cut(s) 198, 536
BsuRI GGCC 5 cut(s) 91, 119, 258, 567, 612
BtgI CCRYGG 1 cut(s) 448
BtrI CACGTC 1 cut(s) 655
BtsCI GGATG 1 cut(s) 96
BtsIMutI CAGTG 1 cut(s) 198
Cac8I GCNNGC 1 cut(s) 648
CaiI CAGNNNCTG 1 cut(s) 488
Cfr13I GGNCC 5 cut(s) 89, 117, 204, 243, 256
CseI GACGC 2 cut(s) 42, 285
Csp6I GTAC 3 cut(s) 427, 636, 659
CviAII CATG 5 cut(s) 11, 551, 693, 725, 731
CviQI GTAC 3 cut(s) 427, 636, 659
DdeI CTNAG 5 cut(s) 384, 468, 528, 674, 709
DpnI GATC 3 cut(s) 5, 200, 538
DpnII GATC 3 cut(s) 3, 198, 536
DraI TTTAAA 1 cut(s) 163
Eam1104I CTCTTC 2 cut(s) 285, 449
EarI CTCTTC 2 cut(s) 285, 449
EciI GGCGGA 1 cut(s) 549
Eco130I CCWWGG 1 cut(s) 621
Eco147I AGGCCT 1 cut(s) 612
Eco24I GRGCYC 1 cut(s) 68
Eco47I GGWCC 2 cut(s) 204, 243
Eco57I CTGAAG 2 cut(s) 258, 688
EcoO109I RGGNCCY 2 cut(s) 89, 243
EcoRII CCWGG 1 cut(s) 252
EcoT14I CCWWGG 1 cut(s) 621
EcoT38I GRGCYC 1 cut(s) 68
ErhI CCWWGG 1 cut(s) 621
Esp3I CGTCTC 1 cut(s) 29
FaeI CATG 5 cut(s) 14, 554, 696, 728, 734
FaiI YATR 9 cut(s) 12, 233, 324, 495, 515, 552, 694, 726, 732
FalI AAGNNNNNCTT 2 cut(s) 657, 689
FaqI GGGAC 2 cut(s) 12, 256
FatI CATG 5 cut(s) 10, 550, 692, 724, 730
FauI CCCGC 2 cut(s) 79, 597
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 2 cut(s) 442, 473
FokI GGATG 1 cut(s) 83
FriOI GRGCYC 1 cut(s) 68
Fsp4HI GCNGC 2 cut(s) 442, 473
FspBI CTAG 3 cut(s) 32, 329, 599
GluI GCNGC 2 cut(s) 442, 473
GsaI CCCAGC 1 cut(s) 104
HaeIII GGCC 5 cut(s) 91, 119, 258, 567, 612
HapII CCGG 4 cut(s) 155, 202, 212, 356
HgaI GACGC 2 cut(s) 42, 285
Hin1I GRCGYC 2 cut(s) 53, 277
Hin1II CATG 5 cut(s) 14, 554, 696, 728, 734
HincII GTYRAC 1 cut(s) 548
HindII GTYRAC 1 cut(s) 548
HinfI GANTC 3 cut(s) 500, 506, 579
HpaII CCGG 4 cut(s) 155, 202, 212, 356
HphI GGTGA 1 cut(s) 584
Hpy166II GTNNAC 3 cut(s) 427, 548, 661
Hpy188I TCNGA 6 cut(s) 81, 238, 385, 480, 505, 529
Hpy8I GTNNAC 3 cut(s) 427, 548, 661
Hpy99I CGWCG 3 cut(s) 58, 279, 659
HpyAV CCTTC 3 cut(s) 102, 150, 233
HpyCH4III ACNGT 2 cut(s) 136, 193
HpyCH4IV ACGT 1 cut(s) 654
HpyCH4V TGCA 4 cut(s) 196, 554, 717, 734
HpyF10VI GCNNNNNNNGC 2 cut(s) 647, 714
HpyF3I CTNAG 5 cut(s) 384, 468, 528, 674, 709
HpySE526I ACGT 1 cut(s) 654
Hsp92I GRCGYC 2 cut(s) 53, 277
Hsp92II CATG 5 cut(s) 14, 554, 696, 728, 734
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 3 cut(s) 3, 198, 536
LguI GCTCTTC 1 cut(s) 285
Lsp1109I GCAGC 1 cut(s) 453
MaeI CTAG 3 cut(s) 32, 329, 599
MaeII ACGT 1 cut(s) 654
MaeIII GTNAC 1 cut(s) 348
MalI GATC 3 cut(s) 5, 200, 538
MbiI CCGCTC 2 cut(s) 592, 633
MboI GATC 3 cut(s) 3, 198, 536
MboII GAAGA 6 cut(s) 56, 135, 299, 302, 372, 466
MflI RGATCY 2 cut(s) 198, 536
MhlI GDGCHC 2 cut(s) 68, 231
MluCI AATT 2 cut(s) 164, 172
MlyI GAGTC 2 cut(s) 494, 588
MmeI TCCRAC 1 cut(s) 104
MseI TTAA 1 cut(s) 162
MslI CAYNNNNRTG 2 cut(s) 666, 729
MspA1I CMGCKG 1 cut(s) 86
MspI CCGG 4 cut(s) 155, 202, 212, 356
MspR9I CCNGG 2 cut(s) 155, 254
MvaI CCWGG 1 cut(s) 254
MvnI CGCG 1 cut(s) 464
MwoI GCNNNNNNNGC 2 cut(s) 647, 714
NciI CCSGG 1 cut(s) 155
NdeII GATC 3 cut(s) 3, 198, 536
NlaIII CATG 5 cut(s) 14, 554, 696, 728, 734
NlaIV GGNNCC 3 cut(s) 90, 138, 244
NmeAIII GCCGAG 2 cut(s) 345, 392
NspI RCATGY 2 cut(s) 554, 728
PasI CCCWGGG 1 cut(s) 253
PceI AGGCCT 1 cut(s) 612
PciSI GCTCTTC 1 cut(s) 285
PfeI GAWTC 1 cut(s) 506
PkrI GCNGC 2 cut(s) 443, 474
PleI GAGTC 2 cut(s) 494, 587
PpsI GAGTC 2 cut(s) 494, 587
PpuMI RGGWCCY 1 cut(s) 243
Psp5II RGGWCCY 1 cut(s) 243
Psp6I CCWGG 1 cut(s) 252
PspFI CCCAGC 1 cut(s) 100
PspGI CCWGG 1 cut(s) 252
PspN4I GGNNCC 3 cut(s) 90, 138, 244
PspPI GGNCC 5 cut(s) 89, 117, 204, 243, 256
PspPPI RGGWCCY 1 cut(s) 243
PstNI CAGNNNCTG 1 cut(s) 488
PsuI RGATCY 2 cut(s) 198, 536
RsaI GTAC 3 cut(s) 428, 637, 660
RsaNI GTAC 3 cut(s) 427, 636, 659
RseI CAYNNNNRTG 2 cut(s) 666, 729
SapI GCTCTTC 1 cut(s) 285
SaqAI TTAA 1 cut(s) 162
SatI GCNGC 2 cut(s) 442, 473
Sau3AI GATC 3 cut(s) 3, 198, 536
Sau96I GGNCC 5 cut(s) 89, 117, 204, 243, 256
SchI GAGTC 2 cut(s) 494, 588
ScrFI CCNGG 2 cut(s) 155, 254
SduI GDGCHC 2 cut(s) 68, 231
SinI GGWCC 2 cut(s) 204, 243
SmiI ATTTAAAT 1 cut(s) 163
SmiMI CAYNNNNRTG 2 cut(s) 666, 729
SmlI CTYRAG 1 cut(s) 59
SmoI CTYRAG 1 cut(s) 59
Sse9I AATT 2 cut(s) 164, 172
SseBI AGGCCT 1 cut(s) 612
SsiI CCGC 5 cut(s) 86, 473, 534, 590, 633
SspMI CTAG 3 cut(s) 32, 329, 599
StuI AGGCCT 1 cut(s) 612
StyD4I CCNGG 2 cut(s) 153, 252
StyI CCWWGG 1 cut(s) 621
SwaI ATTTAAAT 1 cut(s) 163
TaaI ACNGT 2 cut(s) 136, 193
TaiI ACGT 1 cut(s) 657
TaqI TCGA 1 cut(s) 372
TasI AATT 2 cut(s) 164, 172
TatI WGTACW 1 cut(s) 426
TauI GCSGC 1 cut(s) 475
TfiI GAWTC 1 cut(s) 506
Tru1I TTAA 1 cut(s) 162
Tru9I TTAA 1 cut(s) 162
TscAI CASTG 1 cut(s) 198
TseI GCWGC 1 cut(s) 441
TspDTI ATGAA 1 cut(s) 719
TspGWI ACGGA 1 cut(s) 53
TspRI CASTG 1 cut(s) 198
VpaK11BI GGWCC 2 cut(s) 204, 243
XceI RCATGY 2 cut(s) 554, 728
XspI CTAG 3 cut(s) 32, 329, 599
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.