Rh6BG248000

Transmembrane protein 184 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0011477
Physical Location & Seq
Reverse (-)
45929033 .. 45935534
6502 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG248000.1

Sequence Viewer

Length: 1281 bp
ATGGTTCCATGCTATGCAGTAGAGTCATTAGTGTCTTTGGTGAACCCATCAATAAGTGTTGATTGCGCAATTCTACGGGATTGTTACGAATCTTTTGCCATGTATTGCTTTGGAAGATACCTGGTTGCATGTTTAGGTGGGGAAGAAAGGACAATCGAGTTTATGGAAAGACAAGGACGAGCAAGTTATAAGACTCCCCTATTAGTAGACAGTTCCGGAAATGGAACTGTCACGCATCCTTTTCCAATGAACTTAATCTTGAAACCATGGAAACTTGGTCAAGGATTTTACCAACTTGTCAAATTCGGAATCGTTCAGTATATGATATTCAAGTCTCTCAGTGCTATTCTAGCAGTTATCCTTGAAGCCTTTGGTGTATACTGTGATGGAGAATTTAAATGGGGATGTGGGTATCCTTATATTGCAGTGATTCTAAATTTTAGTCAGTCATGGGCTTTGTACTGTCTAGTTCAGTTTTACGCCGTTACAAAAGATGAACTAGCTCATATAAAGCCATTATACAAGTTTCTGACTTTTAAGTCGATTGTGTTCTTGACATGGTGGCAAGGTGTGGCAATTGCTCTTCTCTATGCTCTTGGTTTGTTCAAAAGTCCTATAGCTCAAGGCTTACAATTTAAGTCAAGTGTTCAAGACTTCGTCATTTGTATAGAGATGTGCATTGCTTCTGTTGTTCACCTGTATGTTTTTCCTGCAAAGCCTTATGAACTGATGGGAGATCGCTTCCCCGGGAGTGTCTCAGTTCTTGGAGACTATGTATCTGCTGACTGTCCTTTGGATCCCGATGAAGTAAGGGACAGTGAACGTCCCACAAAGCTACGCCTTCCCACTCCTGGCATTGATGTTAGGAGCGGAATGACCATAAGAGAAAGCGTTCGGGATGTTTTTATCGGTGGTGGGGGATATATTGTTAGCGATGTGAAGTTTACAGTAACACAGGCAGTTGAGCCTGTAGAGAAGGGGTTAACAAGGTTCAATGAGAAGCTACACAAGATATCTCAAAACATTAAGAGACATGACAAGGAGAAGAGGAAAACAAAGGATGACAGTTGTATTTCCACATCGTCACCTGTAGGGAAGGTGATTCGTGGGATAGATGACCCTCTCTTGAATGGAAGTATGAGCGACAGTGGTGTATCAAGGGCAAAGAAGCATCGCCGAAAATCAGGTTATACGAGTGCAGAAAGCGGTGGAGAGAGCAGCAGTGACCAAAGTTATGGTGGGTATCAGGTCAGAGGCCGCAGGTGGGTTACCAAAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Solute_trans_a

Protein Analysis

426

Amino Acids

47.53

Weight (kDa)

8.67

Isoelectric Point (pI)

41.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Solute_trans_a PF03619 1 - 241 5.6e-78 Organic solute transporter Ostalpha
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011477)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38360
fragaria_vesca FvH4_2g16560 FvH4_2g16560
malus_domestica MD05G1133900.v1.1 MD10G1138900.v1.1
prunus_persica Prupe.8G177700_v2.0.a1
pyrus_communis pycom05g13070 pycom10g11810
rosa_chinensis RchiOBHm_Chr6g0280631
rosa_laevigata RLG00000013042
rosa_multiflora Rmu_sc0000976.1_g000001
rosa_roxburghii Rroxscaffold_7G00187860
rosa_rugosa Rorug06G0133000 Rorug06G0133100 Rorug06G0133200
rosa_samantha Rh6AG245600 Rh6BG248000 Rh6CG249400 Rh6DG240600
rosa_wichuraiana Rw6G021260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 189
AarI CACCTGC 1 cut(s) 1251
AasI GACNNNNNNGTC 1 cut(s) 538
Acc16I TGCGCA 1 cut(s) 67
Acc36I ACCTGC 1 cut(s) 1251
AccBSI CCGCTC 1 cut(s) 870
AccI GTMKAC 2 cut(s) 207, 378
AccIII TCCGGA 1 cut(s) 215
AciI CCGC 3 cut(s) 870, 1206, 1258
AclWI GGATC 2 cut(s) 791, 804
AcsI RAATTY 3 cut(s) 302, 392, 436
AfaI GTAC 1 cut(s) 461
AfiI CCNNNNNNNGG 2 cut(s) 851, 1264
AgsI TTSAA 7 cut(s) 262, 331, 365, 607, 650, 994, 1129
AjnI CCWGG 2 cut(s) 120, 850
AluBI AGCT 4 cut(s) 503, 620, 835, 1003
AluI AGCT 4 cut(s) 503, 620, 835, 1003
Alw26I GTCTC 4 cut(s) 339, 760, 762, 1024
AlwI GGATC 2 cut(s) 791, 804
Ama87I CYCGRG 1 cut(s) 746
Aor13HI TCCGGA 1 cut(s) 215
AoxI GGCC 1 cut(s) 1255
ApeKI GCWGC 1 cut(s) 1218
ApoI RAATTY 3 cut(s) 302, 392, 436
Asp700I GAANNNNTTC 1 cut(s) 891
AspLEI GCGC 1 cut(s) 68
AsuC2I CCSGG 2 cut(s) 747, 748
AsuHPI GGTGA 4 cut(s) 52, 686, 1077, 1111
AvaI CYCGRG 1 cut(s) 746
BamHI GGATCC 1 cut(s) 796
BbvI GCAGC 1 cut(s) 1230
BccI CCATC 3 cut(s) 55, 380, 724
BceAI ACGGC 1 cut(s) 467
BcgI CGANNNNNNTGC 2 cut(s) 77, 111
BciT130I CCWGG 2 cut(s) 122, 852
BciVI GTATCC 1 cut(s) 423
BcnI CCSGG 2 cut(s) 747, 748
BcoDI GTCTC 4 cut(s) 339, 760, 762, 1024
BfaI CTAG 3 cut(s) 350, 467, 500
BfmI CTRYAG 3 cut(s) 615, 969, 1089
BfuAI ACCTGC 1 cut(s) 1251
BfuI GTATCC 1 cut(s) 423
BisI GCNGC 2 cut(s) 1219, 1258
BlsI GCNGC 2 cut(s) 1220, 1259
Bme1390I CCNGG 4 cut(s) 122, 747, 748, 852
BmeT110I CYCGRG 1 cut(s) 746
BmiI GGNNCC 2 cut(s) 6, 798
BmrFI CCNGG 4 cut(s) 122, 747, 748, 852
BmsI GCATC 2 cut(s) 244, 1180
BpuEI CTTGAG 1 cut(s) 606
BpuMI CCSGG 2 cut(s) 747, 748
BsaJI CCNNGG 3 cut(s) 266, 745, 746
BsaWI WCCGGW 1 cut(s) 215
BsaXI ACNNNNNCTCC 2 cut(s) 759, 789
Bsc4I CCNNNNNNNGG 2 cut(s) 851, 1264
Bse3DI GCAATG 1 cut(s) 678
BseAI TCCGGA 1 cut(s) 215
BseBI CCWGG 2 cut(s) 122, 852
BseDI CCNNGG 3 cut(s) 266, 745, 746
BseGI GGATG 4 cut(s) 235, 410, 904, 1066
BseLI CCNNNNNNNGG 2 cut(s) 851, 1264
BseMI GCAATG 1 cut(s) 678
BseMII CTCAG 2 cut(s) 352, 771
BseXI GCAGC 1 cut(s) 1230
BsgI GTGCAG 1 cut(s) 1218
BshFI GGCC 1 cut(s) 1257
BsiHKCI CYCGRG 1 cut(s) 746
BsiSI CCGG 2 cut(s) 216, 747
BslFI GGGAC 2 cut(s) 810, 827
BslI CCNNNNNNNGG 2 cut(s) 851, 1264
BsmAI GTCTC 4 cut(s) 339, 760, 762, 1024
BsmFI GGGAC 2 cut(s) 810, 827
BsnI GGCC 1 cut(s) 1257
BsoBI CYCGRG 1 cut(s) 746
Bsp13I TCCGGA 1 cut(s) 215
Bsp143I GATC 2 cut(s) 736, 796
Bsp19I CCATGG 1 cut(s) 266
BspACI CCGC 3 cut(s) 870, 1206, 1258
BspANI GGCC 1 cut(s) 1257
BspCNI CTCAG 2 cut(s) 351, 770
BspEI TCCGGA 1 cut(s) 215
BspLI GGNNCC 2 cut(s) 6, 798
BspMI ACCTGC 1 cut(s) 1251
BspPI GGATC 2 cut(s) 791, 804
BspQI GCTCTTC 1 cut(s) 588
BsrBI CCGCTC 1 cut(s) 870
BsrDI GCAATG 1 cut(s) 678
BssECI CCNNGG 3 cut(s) 266, 745, 746
BssMI GATC 2 cut(s) 736, 796
BssNAI GTATAC 1 cut(s) 379
BssT1I CCWWGG 1 cut(s) 266
Bst1107I GTATAC 1 cut(s) 379
Bst2UI CCWGG 2 cut(s) 122, 852
Bst4CI ACNGT 9 cut(s) 212, 229, 383, 464, 788, 818, 949, 1067, 1148
Bst6I CTCTTC 2 cut(s) 588, 1040
BstDEI CTNAG 2 cut(s) 338, 757
BstDSI CCRYGG 1 cut(s) 266
BstEII GGTNACC 1 cut(s) 1267
BstF5I GGATG 4 cut(s) 235, 410, 904, 1066
BstHHI GCGC 1 cut(s) 68
BstKTI GATC 2 cut(s) 739, 799
BstMAI GTCTC 4 cut(s) 339, 760, 762, 1024
BstMBI GATC 2 cut(s) 736, 796
BstMWI GCNNNNNNNGC 1 cut(s) 350
BstNI CCWGG 2 cut(s) 122, 852
BstNSI RCATGY 1 cut(s) 132
BstPI GGTNACC 1 cut(s) 1267
BstSCI CCNGG 4 cut(s) 120, 745, 746, 850
BstSFI CTRYAG 3 cut(s) 615, 969, 1089
BstV1I GCAGC 1 cut(s) 1230
BstX2I RGATCY 1 cut(s) 796
BstXI CCANNNNNNTGG 1 cut(s) 1235
BstYI RGATCY 1 cut(s) 796
BstZ17I GTATAC 1 cut(s) 379
BsuI GTATCC 1 cut(s) 423
BsuRI GGCC 1 cut(s) 1257
BtgI CCRYGG 1 cut(s) 266
BtgZI GCGATG 2 cut(s) 948, 1157
BtsCI GGATG 4 cut(s) 235, 410, 904, 1066
BtsI GCAGTG 2 cut(s) 432, 1228
BtsIMutI CAGTG 5 cut(s) 346, 432, 823, 1153, 1228
BveI ACCTGC 1 cut(s) 1251
CfoI GCGC 1 cut(s) 68
Cfr9I CCCGGG 1 cut(s) 746
CsiI ACCWGGT 1 cut(s) 120
Csp6I GTAC 1 cut(s) 460
CviAII CATG 7 cut(s) 9, 100, 129, 267, 450, 558, 1034
CviQI GTAC 1 cut(s) 460
DdeI CTNAG 2 cut(s) 338, 757
DpnI GATC 2 cut(s) 738, 798
DpnII GATC 2 cut(s) 736, 796
DraI TTTAAA 1 cut(s) 397
DrdI GACNNNNNNGTC 1 cut(s) 538
DseDI GACNNNNNNGTC 1 cut(s) 538
Eam1104I CTCTTC 2 cut(s) 588, 1040
EarI CTCTTC 2 cut(s) 588, 1040
Eco130I CCWWGG 1 cut(s) 266
Eco32I GATATC 1 cut(s) 1014
Eco88I CYCGRG 1 cut(s) 746
Eco91I GGTNACC 1 cut(s) 1267
EcoO65I GGTNACC 1 cut(s) 1267
EcoRII CCWGG 2 cut(s) 120, 850
EcoRV GATATC 1 cut(s) 1014
EcoT14I CCWWGG 1 cut(s) 266
ErhI CCWWGG 1 cut(s) 266
FaeI CATG 7 cut(s) 12, 103, 132, 270, 453, 561, 1037
FaqI GGGAC 2 cut(s) 810, 827
FatI CATG 7 cut(s) 8, 99, 128, 266, 449, 557, 1033
FblI GTMKAC 2 cut(s) 207, 378
Fnu4HI GCNGC 2 cut(s) 1219, 1258
FokI GGATG 4 cut(s) 222, 417, 911, 1073
Fsp4HI GCNGC 2 cut(s) 1219, 1258
FspBI CTAG 3 cut(s) 350, 467, 500
FspI TGCGCA 1 cut(s) 67
GlaI GCGC 1 cut(s) 67
GluI GCNGC 2 cut(s) 1219, 1258
HaeIII GGCC 1 cut(s) 1257
HapII CCGG 2 cut(s) 216, 747
HhaI GCGC 1 cut(s) 68
Hin1II CATG 7 cut(s) 12, 103, 132, 270, 453, 561, 1037
Hin6I GCGC 1 cut(s) 66
HinP1I GCGC 1 cut(s) 66
HincII GTYRAC 1 cut(s) 984
HindII GTYRAC 1 cut(s) 984
HinfI GANTC 6 cut(s) 23, 89, 193, 309, 430, 1102
HpaI GTTAAC 1 cut(s) 984
HpaII CCGG 2 cut(s) 216, 747
HphI GGTGA 4 cut(s) 52, 686, 1077, 1111
Hpy166II GTNNAC 7 cut(s) 43, 208, 379, 694, 821, 945, 984
Hpy188I TCNGA 3 cut(s) 308, 531, 1253
Hpy188III TCNNGA 7 cut(s) 216, 259, 553, 650, 800, 896, 1126
Hpy8I GTNNAC 7 cut(s) 43, 208, 379, 694, 821, 945, 984
HpyAV CCTTC 3 cut(s) 851, 970, 1090
HpyCH4III ACNGT 9 cut(s) 212, 229, 383, 464, 788, 818, 949, 1067, 1148
HpyCH4IV ACGT 1 cut(s) 823
HpyCH4V TGCA 6 cut(s) 17, 128, 425, 678, 713, 1199
HpyF10VI GCNNNNNNNGC 1 cut(s) 350
HpyF3I CTNAG 2 cut(s) 338, 757
HpySE526I ACGT 1 cut(s) 823
Hsp92II CATG 7 cut(s) 12, 103, 132, 270, 453, 561, 1037
HspAI GCGC 1 cut(s) 66
Kpn2I TCCGGA 1 cut(s) 215
KspAI GTTAAC 1 cut(s) 984
Kzo9I GATC 2 cut(s) 736, 796
LguI GCTCTTC 1 cut(s) 588
LmnI GCTCC 1 cut(s) 867
Lsp1109I GCAGC 1 cut(s) 1230
LweI GCATC 2 cut(s) 244, 1180
MabI ACCWGGT 1 cut(s) 120
MaeI CTAG 3 cut(s) 350, 467, 500
MaeII ACGT 1 cut(s) 823
MaeIII GTNAC 7 cut(s) 83, 229, 484, 949, 1083, 1223, 1267
MalI GATC 2 cut(s) 738, 798
MbiI CCGCTC 1 cut(s) 870
MboI GATC 2 cut(s) 736, 796
MboII GAAGA 4 cut(s) 126, 155, 575, 1057
MfeI CAATTG 1 cut(s) 576
MflI RGATCY 1 cut(s) 796
MluCI AATT 6 cut(s) 69, 302, 392, 436, 576, 632
MlyI GAGTC 2 cut(s) 32, 187
MnlI CCTC 3 cut(s) 1041, 1131, 1247
MroI TCCGGA 1 cut(s) 215
MroXI GAANNNNTTC 1 cut(s) 891
MseI TTAA 7 cut(s) 254, 396, 537, 636, 983, 1026, 1279
MslI CAYNNNNRTG 1 cut(s) 699
MspI CCGG 2 cut(s) 216, 747
MspR9I CCNGG 4 cut(s) 122, 747, 748, 852
MunI CAATTG 1 cut(s) 576
MvaI CCWGG 2 cut(s) 122, 852
MwoI GCNNNNNNNGC 1 cut(s) 350
NciI CCSGG 2 cut(s) 747, 748
NcoI CCATGG 1 cut(s) 266
NdeII GATC 2 cut(s) 736, 796
NlaIII CATG 7 cut(s) 12, 103, 132, 270, 453, 561, 1037
NlaIV GGNNCC 2 cut(s) 6, 798
NmuCI GTSAC 3 cut(s) 229, 1083, 1223
NsbI TGCGCA 1 cut(s) 67
NspI RCATGY 1 cut(s) 132
PaqCI CACCTGC 1 cut(s) 1251
PciSI GCTCTTC 1 cut(s) 588
PdmI GAANNNNTTC 1 cut(s) 891
PfeI GAWTC 4 cut(s) 89, 309, 430, 1102
PflFI GACNNNGTC 1 cut(s) 656
PkrI GCNGC 2 cut(s) 1220, 1259
PleI GAGTC 2 cut(s) 31, 187
PpsI GAGTC 2 cut(s) 31, 187
PsiI TTATAA 1 cut(s) 189
Psp6I CCWGG 2 cut(s) 120, 850
PspEI GGTNACC 1 cut(s) 1267
PspGI CCWGG 2 cut(s) 120, 850
PspN4I GGNNCC 2 cut(s) 6, 798
PsuI RGATCY 1 cut(s) 796
PsyI GACNNNGTC 1 cut(s) 656
RsaI GTAC 1 cut(s) 461
RsaNI GTAC 1 cut(s) 460
RseI CAYNNNNRTG 1 cut(s) 699
SapI GCTCTTC 1 cut(s) 588
SaqAI TTAA 7 cut(s) 254, 396, 537, 636, 983, 1026, 1279
SatI GCNGC 2 cut(s) 1219, 1258
Sau3AI GATC 2 cut(s) 736, 796
SchI GAGTC 2 cut(s) 32, 187
ScrFI CCNGG 4 cut(s) 122, 747, 748, 852
SexAI ACCWGGT 1 cut(s) 120
SfaNI GCATC 2 cut(s) 244, 1180
SfcI CTRYAG 3 cut(s) 615, 969, 1089
SmaI CCCGGG 1 cut(s) 748
SmiI ATTTAAAT 1 cut(s) 397
SmiMI CAYNNNNRTG 1 cut(s) 699
SmlI CTYRAG 1 cut(s) 621
SmoI CTYRAG 1 cut(s) 621
Sse9I AATT 6 cut(s) 69, 302, 392, 436, 576, 632
SsiI CCGC 3 cut(s) 870, 1206, 1258
SspMI CTAG 3 cut(s) 350, 467, 500
StyD4I CCNGG 4 cut(s) 120, 745, 746, 850
StyI CCWWGG 1 cut(s) 266
SwaI ATTTAAAT 1 cut(s) 397
TaaI ACNGT 9 cut(s) 212, 229, 383, 464, 788, 818, 949, 1067, 1148
TaiI ACGT 1 cut(s) 826
TaqI TCGA 2 cut(s) 156, 542
TasI AATT 6 cut(s) 69, 302, 392, 436, 576, 632
TatI WGTACW 1 cut(s) 459
TauI GCSGC 1 cut(s) 1260
TfiI GAWTC 4 cut(s) 89, 309, 430, 1102
Tru1I TTAA 7 cut(s) 254, 396, 537, 636, 983, 1026, 1279
Tru9I TTAA 7 cut(s) 254, 396, 537, 636, 983, 1026, 1279
TscAI CASTG 5 cut(s) 346, 432, 823, 1153, 1228
TseFI GTSAC 3 cut(s) 229, 1083, 1223
TseI GCWGC 1 cut(s) 1218
Tsp45I GTSAC 3 cut(s) 229, 1083, 1223
TspDTI ATGAA 4 cut(s) 263, 510, 738, 819
TspMI CCCGGG 1 cut(s) 746
TspRI CASTG 5 cut(s) 346, 432, 823, 1153, 1228
Tth111I GACNNNGTC 1 cut(s) 656
XapI RAATTY 3 cut(s) 302, 392, 436
XceI RCATGY 1 cut(s) 132
XcmI CCANNNNNNNNNTGG 1 cut(s) 1235
XmaI CCCGGG 1 cut(s) 746
XmiI GTMKAC 2 cut(s) 207, 378
XmnI GAANNNNTTC 1 cut(s) 891
XspI CTAG 3 cut(s) 350, 467, 500
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.