Rorug06G0133000

Transmembrane protein 184 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0011477
Physical Location & Seq
Forward (+)
18794479 .. 18795114
636 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0133000.1

Sequence Viewer

Length: 615 bp
ATGGAACCACAAACCCAGCAACCAACCGAGGATGGAGGAAGCAACAAAGCAGCCGGGAGTAGTGCTAACATGCTTTGTAAGCGGAGCAGGTGGAATCCCACTACAGATCAGATAAGAATCCTCAAGGAGCTTTTCTACAATAAGGGAGTTAGGTCCCCAACTGTAGAGCAGCTGAAATGGTACGGCAAGATCGAGTTCAAGAACGTCTATTTTTGGTTCGTGAACCAAAGGGCTCGGGAGAAGCAGAAGAAGAAGTCCACTTCGGATGTTCATGTGCCCATGCAAAGATCAGGGCTTGTTGGTGATGACAATGTTACCAATTGGAAACATGAGGATCAGTATATTAACTTTGGATCTTCTGCACCTGCTTCTGCTTCTTCCGCTGGTGTGATGATTGCTGTTAACGGGCAGATGGGGAACTATGGTGGTTATGGATCTATGAACATGGAGAAGAGTGCTAGGGATTGTTCAATCTTAGCTGGAGGGGGAACTAGTTCTACTTTCTTTGACATGAATGTAGAACAAACTTTCATGGAACAAAGAGGAGAAGATCACCAGGAGATTGAAACCCTTTCACTGTTTCCCGGCATGGTGAGGACATCTTTGACAACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Solute_trans_a

Protein Analysis

204

Amino Acids

22.79

Weight (kDa)

7.75

Isoelectric Point (pI)

47.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 27 - 82 8.7e-07 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011477)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38360
fragaria_vesca FvH4_2g16560 FvH4_2g16560
malus_domestica MD05G1133900.v1.1 MD10G1138900.v1.1
prunus_persica Prupe.8G177700_v2.0.a1
pyrus_communis pycom05g13070 pycom10g11810
rosa_chinensis RchiOBHm_Chr6g0280631
rosa_laevigata RLG00000013042
rosa_multiflora Rmu_sc0000976.1_g000001
rosa_roxburghii Rroxscaffold_7G00187860
rosa_rugosa Rorug06G0133000 Rorug06G0133100 Rorug06G0133200
rosa_samantha Rh6AG245600 Rh6BG248000 Rh6CG249400 Rh6DG240600
rosa_wichuraiana Rw6G021260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 78, 373
Acc36I ACCTGC 2 cut(s) 78, 373
AciI CCGC 2 cut(s) 82, 381
AclWI GGATC 3 cut(s) 342, 361, 442
AfaI GTAC 1 cut(s) 182
AgsI TTSAA 3 cut(s) 199, 471, 566
AhlI ACTAGT 1 cut(s) 491
AjnI CCWGG 1 cut(s) 555
AluBI AGCT 3 cut(s) 130, 172, 479
AluI AGCT 3 cut(s) 130, 172, 479
AlwI GGATC 3 cut(s) 342, 361, 442
Ama87I CYCGRG 1 cut(s) 234
ApeKI GCWGC 2 cut(s) 50, 169
Asp700I GAANNNNTTC 1 cut(s) 493
AspS9I GGNCC 1 cut(s) 153
AsuC2I CCSGG 2 cut(s) 55, 585
AsuHPI GGTGA 3 cut(s) 314, 545, 604
AvaI CYCGRG 1 cut(s) 234
AvaII GGWCC 1 cut(s) 153
BaeGI GKGCMC 1 cut(s) 279
BanII GRGCYC 1 cut(s) 235
BbvI GCAGC 2 cut(s) 62, 181
BccI CCATC 2 cut(s) 26, 406
BceAI ACGGC 1 cut(s) 199
BciT130I CCWGG 1 cut(s) 557
BcnI CCSGG 2 cut(s) 55, 585
BcuI ACTAGT 1 cut(s) 491
BfaI CTAG 2 cut(s) 459, 492
BfmI CTRYAG 2 cut(s) 102, 162
BfuAI ACCTGC 2 cut(s) 78, 373
BisI GCNGC 2 cut(s) 51, 170
BlsI GCNGC 2 cut(s) 52, 171
Bme1390I CCNGG 3 cut(s) 55, 557, 585
Bme18I GGWCC 1 cut(s) 153
BmeT110I CYCGRG 1 cut(s) 234
BmgT120I GGNCC 1 cut(s) 153
BmiI GGNNCC 2 cut(s) 6, 155
BmrFI CCNGG 3 cut(s) 55, 557, 585
BpmI CTGGAG 1 cut(s) 501
BpuEI CTTGAG 1 cut(s) 107
BpuMI CCSGG 2 cut(s) 55, 585
BsaBI GATNNNNATC 1 cut(s) 116
BsaJI CCNNGG 1 cut(s) 27
Bse8I GATNNNNATC 1 cut(s) 116
BseBI CCWGG 1 cut(s) 557
BseDI CCNNGG 1 cut(s) 27
BseGI GGATG 2 cut(s) 37, 271
BseJI GATNNNNATC 1 cut(s) 116
BseRI GAGGAG 1 cut(s) 558
BseSI GKGCMC 1 cut(s) 279
BseXI GCAGC 2 cut(s) 62, 181
BseYI CCCAGC 1 cut(s) 15
BsgI GTGCAG 1 cut(s) 345
BsiHKCI CYCGRG 1 cut(s) 234
BsiSI CCGG 2 cut(s) 54, 585
BslFI GGGAC 1 cut(s) 139
BsmFI GGGAC 1 cut(s) 139
BsoBI CYCGRG 1 cut(s) 234
Bsp1286I GDGCHC 2 cut(s) 235, 279
Bsp143I GATC 7 cut(s) 106, 189, 287, 334, 353, 434, 550
BspACI CCGC 2 cut(s) 82, 381
BspLI GGNNCC 2 cut(s) 6, 155
BspMI ACCTGC 2 cut(s) 78, 373
BspPI GGATC 3 cut(s) 342, 361, 442
BssECI CCNNGG 1 cut(s) 27
BssMI GATC 7 cut(s) 106, 189, 287, 334, 353, 434, 550
Bst2UI CCWGG 1 cut(s) 557
Bst4CI ACNGT 2 cut(s) 163, 579
Bst6I CTCTTC 1 cut(s) 446
BstDEI CTNAG 1 cut(s) 475
BstF5I GGATG 2 cut(s) 37, 271
BstKTI GATC 7 cut(s) 109, 192, 290, 337, 356, 437, 553
BstMBI GATC 7 cut(s) 106, 189, 287, 334, 353, 434, 550
BstMWI GCNNNNNNNGC 2 cut(s) 79, 380
BstNI CCWGG 1 cut(s) 557
BstNSI RCATGY 1 cut(s) 73
BstSCI CCNGG 3 cut(s) 53, 555, 583
BstSFI CTRYAG 2 cut(s) 102, 162
BstSLI GKGCMC 1 cut(s) 279
BstV1I GCAGC 2 cut(s) 62, 181
BstX2I RGATCY 2 cut(s) 353, 434
BstYI RGATCY 2 cut(s) 353, 434
BtsCI GGATG 2 cut(s) 37, 271
BtsIMutI CAGTG 1 cut(s) 575
BveI ACCTGC 2 cut(s) 78, 373
Cfr13I GGNCC 1 cut(s) 153
Csp6I GTAC 1 cut(s) 181
CviAII CATG 9 cut(s) 70, 272, 280, 329, 445, 511, 532, 589, 612
CviJI RGCY 6 cut(s) 53, 130, 172, 233, 295, 479
CviKI_1 RGCY 6 cut(s) 53, 130, 172, 233, 295, 479
CviQI GTAC 1 cut(s) 181
DdeI CTNAG 1 cut(s) 475
DpnI GATC 7 cut(s) 108, 191, 289, 336, 355, 436, 552
DpnII GATC 7 cut(s) 106, 189, 287, 334, 353, 434, 550
Eam1104I CTCTTC 1 cut(s) 446
EarI CTCTTC 1 cut(s) 446
Eco24I GRGCYC 1 cut(s) 235
Eco47I GGWCC 1 cut(s) 153
Eco88I CYCGRG 1 cut(s) 234
EcoO109I RGGNCCY 1 cut(s) 153
EcoRII CCWGG 1 cut(s) 555
EcoT38I GRGCYC 1 cut(s) 235
FaeI CATG 9 cut(s) 73, 275, 283, 332, 448, 514, 535, 592, 615
FaqI GGGAC 1 cut(s) 139
FatI CATG 9 cut(s) 69, 271, 279, 328, 444, 510, 531, 588, 611
Fnu4HI GCNGC 2 cut(s) 51, 170
FokI GGATG 2 cut(s) 44, 278
FriOI GRGCYC 1 cut(s) 235
Fsp4HI GCNGC 2 cut(s) 51, 170
FspBI CTAG 2 cut(s) 459, 492
GluI GCNGC 2 cut(s) 51, 170
GsaI CCCAGC 1 cut(s) 19
GsuI CTGGAG 1 cut(s) 501
HapII CCGG 2 cut(s) 54, 585
Hin1II CATG 9 cut(s) 73, 275, 283, 332, 448, 514, 535, 592, 615
HincII GTYRAC 1 cut(s) 403
HindII GTYRAC 1 cut(s) 403
HinfI GANTC 2 cut(s) 94, 117
HpaI GTTAAC 1 cut(s) 403
HpaII CCGG 2 cut(s) 54, 585
HphI GGTGA 3 cut(s) 314, 545, 604
Hpy166II GTNNAC 3 cut(s) 223, 258, 403
Hpy188I TCNGA 2 cut(s) 111, 265
Hpy188III TCNNGA 3 cut(s) 199, 220, 236
Hpy8I GTNNAC 3 cut(s) 223, 258, 403
HpyCH4III ACNGT 2 cut(s) 163, 579
HpyCH4IV ACGT 1 cut(s) 204
HpyCH4V TGCA 2 cut(s) 283, 362
HpyF10VI GCNNNNNNNGC 2 cut(s) 79, 380
HpyF3I CTNAG 1 cut(s) 475
HpySE526I ACGT 1 cut(s) 204
Hsp92II CATG 9 cut(s) 73, 275, 283, 332, 448, 514, 535, 592, 615
KspAI GTTAAC 1 cut(s) 403
Kzo9I GATC 7 cut(s) 106, 189, 287, 334, 353, 434, 550
LmnI GCTCC 2 cut(s) 84, 127
Lsp1109I GCAGC 2 cut(s) 62, 181
MaeI CTAG 2 cut(s) 459, 492
MaeII ACGT 1 cut(s) 204
MaeIII GTNAC 1 cut(s) 313
MalI GATC 7 cut(s) 108, 191, 289, 336, 355, 436, 552
MboI GATC 7 cut(s) 106, 189, 287, 334, 353, 434, 550
MboII GAAGA 6 cut(s) 259, 262, 348, 369, 463, 560
MfeI CAATTG 1 cut(s) 319
MflI RGATCY 2 cut(s) 353, 434
MhlI GDGCHC 2 cut(s) 235, 279
MluCI AATT 1 cut(s) 319
MnlI CCTC 7 cut(s) 22, 29, 131, 325, 476, 536, 588
MroXI GAANNNNTTC 1 cut(s) 493
MseI TTAA 2 cut(s) 345, 402
MspA1I CMGCKG 2 cut(s) 172, 383
MspI CCGG 2 cut(s) 54, 585
MspR9I CCNGG 3 cut(s) 55, 557, 585
MunI CAATTG 1 cut(s) 319
MvaI CCWGG 1 cut(s) 557
MwoI GCNNNNNNNGC 2 cut(s) 79, 380
NciI CCSGG 2 cut(s) 55, 585
NdeII GATC 7 cut(s) 106, 189, 287, 334, 353, 434, 550
NlaIII CATG 9 cut(s) 73, 275, 283, 332, 448, 514, 535, 592, 615
NlaIV GGNNCC 2 cut(s) 6, 155
NspI RCATGY 1 cut(s) 73
PaqCI CACCTGC 2 cut(s) 78, 373
PcsI WCGNNNNNNNCGW 1 cut(s) 189
PdmI GAANNNNTTC 1 cut(s) 493
PfeI GAWTC 2 cut(s) 94, 117
PkrI GCNGC 2 cut(s) 52, 171
PpuMI RGGWCCY 1 cut(s) 153
Psp5II RGGWCCY 1 cut(s) 153
Psp6I CCWGG 1 cut(s) 555
PspFI CCCAGC 1 cut(s) 15
PspGI CCWGG 1 cut(s) 555
PspN4I GGNNCC 2 cut(s) 6, 155
PspPI GGNCC 1 cut(s) 153
PspPPI RGGWCCY 1 cut(s) 153
PsrI GAACNNNNNNTAC 2 cut(s) 481, 513
PsuI RGATCY 2 cut(s) 353, 434
PvuII CAGCTG 1 cut(s) 172
RsaI GTAC 1 cut(s) 182
RsaNI GTAC 1 cut(s) 181
SaqAI TTAA 2 cut(s) 345, 402
SatI GCNGC 2 cut(s) 51, 170
Sau3AI GATC 7 cut(s) 106, 189, 287, 334, 353, 434, 550
Sau96I GGNCC 1 cut(s) 153
ScrFI CCNGG 3 cut(s) 55, 557, 585
SduI GDGCHC 2 cut(s) 235, 279
SetI ASST 7 cut(s) 92, 132, 155, 174, 207, 367, 481
SfcI CTRYAG 2 cut(s) 102, 162
SinI GGWCC 1 cut(s) 153
SmlI CTYRAG 1 cut(s) 122
SmoI CTYRAG 1 cut(s) 122
SpeI ACTAGT 1 cut(s) 491
Sse9I AATT 1 cut(s) 319
SsiI CCGC 2 cut(s) 82, 381
SspMI CTAG 2 cut(s) 459, 492
StyD4I CCNGG 3 cut(s) 53, 555, 583
TaaI ACNGT 2 cut(s) 163, 579
TaiI ACGT 1 cut(s) 207
TaqI TCGA 1 cut(s) 192
TasI AATT 1 cut(s) 319
TfiI GAWTC 2 cut(s) 94, 117
Tru1I TTAA 2 cut(s) 345, 402
Tru9I TTAA 2 cut(s) 345, 402
TscAI CASTG 1 cut(s) 582
TseI GCWGC 2 cut(s) 50, 169
TspDTI ATGAA 4 cut(s) 260, 455, 520, 527
TspRI CASTG 1 cut(s) 582
VpaK11BI GGWCC 1 cut(s) 153
XceI RCATGY 1 cut(s) 73
XmnI GAANNNNTTC 1 cut(s) 493
XspI CTAG 2 cut(s) 459, 492
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.