Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0011477

Physical Location & Seq

Genomic Coordinates Reverse (-)

15377665 .. 15381200

Gene Structure 3536 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g11810.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGTATTGCTTTGGAAGGTACTTGGTTGCATGCTTGGGTGGGGAAGAGAGGACTATTGAGTTTATGGAAAGGGAAGGACGTGCAAGTTCTAAGATTCCCCTATTAGAACACAGTTCTGAAAGGGGAACCGTTAAGCATCCTTTTCCAGTGAACTATATCTTGAAACCATGGAAACTTGGTCAATGGTTTTACCAAGTTGTCAAATTCGGAATTGTTCAGTATATGTTAATTAAGTCTCTCAGTGCTATTGTAGCAGTTATCCTTGAAGCTTTTGATGTATATTGCGAAGGTGACTTTAAATGGGGATGTGGGTATCCTTATATTGCAGTGGTTCTAAATTTTAGTCAGTCATGGGCTTTGTACTGTCTTGTTCAGTTTTACACTGTTACAAAAGATGAACTAGCTCGCATAAAACCATTAGCCAAGTTTTTGACATTTAAATCAATTGTGTTTTTGACATGGTGGCAAGGTGTGGCAATTGCTCTTCTCTATGCCTTGGGTTTGTTCAAAAGCCCTATAGCTCAAGGATTGCAGTTTAAGTCAAGTGTTCAAGACTTCATCATTTGTATAGAGATGGGCATTGCCTCTGTTGTTCACCTATATGTGTTTCCTGCCAAACCTTACGAAATGATGGGAGATCGTTTTCCTGGAACTGTCTCAGTTCTTGGAGACTATGTATCGGCTGACTGTCCTTTGGATCCAGAGGAGGTTAGGGACAGTGAACGCCCCACAAAGCTACGCCTCCCCACTCCTGACATTGATGTCAAGAGCGGCATGACCATCAGAGAAAGTGTTCGAGATGTTTTCATTGGTGGCGGGGAATATATTGTGCAAGATGTGAAGTTCACAGTTACACAGGCAGTAGAGCCAGTGGAGAAGGGGTTCACCAGGTTCAATGAGAAGCTACACAAGATCTCCGAAAACATTAAGAAACATGACAAGGAGAAACGAAAGACGAGGGATGACAGTTGTATATCCACATCACCTACACGGAAGGTGATTCGTGGGATAGATGACCCTCTCTTGAACGGAAGCATGAGTGACAGTGGGGTTGCAAGGGCAAATAGGCATCGCCGCAAATCTGGATATACCAGTGCAGAAAGCGGTGGAGAGAGTGGTAGTGATCAGAGTTATGGTGGGTTTCAGGTCAGAGGCCGTAGGTGGGTAACCAAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Solute_trans_a

Protein Analysis

393

Amino Acids

44.33

Weight (kDa)

8.82

Isoelectric Point (pI)

36.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011477)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38360
fragaria_vesca	FvH4_2g16560 FvH4_2g16560
malus_domestica	MD05G1133900.v1.1 MD10G1138900.v1.1
prunus_persica	Prupe.8G177700_v2.0.a1
pyrus_communis	pycom05g13070 pycom10g11810
rosa_chinensis	RchiOBHm_Chr6g0280631
rosa_laevigata	RLG00000013042
rosa_multiflora	Rmu_sc0000976.1_g000001
rosa_roxburghii	Rroxscaffold_7G00187860
rosa_rugosa	Rorug06G0133000 Rorug06G0133100 Rorug06G0133200
rosa_samantha	Rh6AG245600 Rh6BG248000 Rh6CG249400 Rh6DG240600
rosa_wichuraiana	Rw6G021260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	761
AccBSI	CCGCTC	1 cut(s)	771
AciI	CCGC	4 cut(s)	771, 816, 1075, 1104
AclWI	GGATC	2 cut(s)	692, 705
AcsI	RAATTY	2 cut(s)	203, 337
AfaI	GTAC	2 cut(s)	20, 362
AfiI	CCNNNNNNNGG	1 cut(s)	1162
AgsI	TTSAA	6 cut(s)	163, 266, 508, 551, 895, 1027
AjiI	CACGTC	1 cut(s)	80
AjnI	CCWGG	2 cut(s)	646, 887
AloI	GAACNNNNNNTCC	2 cut(s)	866, 898
AluBI	AGCT	5 cut(s)	269, 404, 521, 736, 904
AluI	AGCT	5 cut(s)	269, 404, 521, 736, 904
Alw26I	GTCTC	3 cut(s)	240, 661, 663
AlwI	GGATC	2 cut(s)	692, 705
AoxI	GGCC	1 cut(s)	1153
ApoI	RAATTY	2 cut(s)	203, 337
Asp700I	GAANNNNTTC	2 cut(s)	792, 881
AsuHPI	GGTGA	5 cut(s)	302, 587, 877, 975, 1009
BamHI	GGATCC	1 cut(s)	697
BccI	CCATC	3 cut(s)	568, 625, 788
BceAI	ACGGC	1 cut(s)	1140
BciT130I	CCWGG	2 cut(s)	648, 889
BciVI	GTATCC	1 cut(s)	324
BclI	TGATCA	1 cut(s)	1123
BcoDI	GTCTC	3 cut(s)	240, 661, 663
BfaI	CTAG	1 cut(s)	401
BfmI	CTRYAG	1 cut(s)	516
BfuI	GTATCC	1 cut(s)	324
BglII	AGATCT	1 cut(s)	912
BisI	GCNGC	2 cut(s)	772, 1075
BlsI	GCNGC	2 cut(s)	773, 1076
Bme1390I	CCNGG	2 cut(s)	648, 889
BmgBI	CACGTC	1 cut(s)	80
BmiI	GGNNCC	2 cut(s)	127, 699
BmrFI	CCNGG	2 cut(s)	648, 889
BmsI	GCATC	2 cut(s)	145, 1078
BpuEI	CTTGAG	1 cut(s)	507
BsaJI	CCNNGG	2 cut(s)	167, 495
BsaXI	ACNNNNNCTCC	6 cut(s)	660, 690, 866, 896, 899, 929
Bsc4I	CCNNNNNNNGG	1 cut(s)	1162
Bse1I	ACTGG	3 cut(s)	146, 869, 1092
Bse3DI	GCAATG	1 cut(s)	579
BseBI	CCWGG	2 cut(s)	648, 889
BseDI	CCNNGG	2 cut(s)	167, 495
BseGI	GGATG	3 cut(s)	136, 311, 967
BseLI	CCNNNNNNNGG	1 cut(s)	1162
BseMI	GCAATG	1 cut(s)	579
BseMII	CTCAG	2 cut(s)	253, 672
BseNI	ACTGG	3 cut(s)	146, 869, 1092
BseRI	GAGGAG	1 cut(s)	719
BsgI	GTGCAG	1 cut(s)	1116
BshFI	GGCC	1 cut(s)	1155
BslFI	GGGAC	1 cut(s)	728
BslI	CCNNNNNNNGG	1 cut(s)	1162
BsmAI	GTCTC	3 cut(s)	240, 661, 663
BsmFI	GGGAC	1 cut(s)	728
BsnI	GGCC	1 cut(s)	1155
Bsp143I	GATC	4 cut(s)	637, 697, 912, 1123
Bsp19I	CCATGG	1 cut(s)	167
BspACI	CCGC	4 cut(s)	771, 816, 1075, 1104
BspANI	GGCC	1 cut(s)	1155
BspCNI	CTCAG	2 cut(s)	252, 671
BspLI	GGNNCC	2 cut(s)	127, 699
BspPI	GGATC	2 cut(s)	692, 705
BspQI	GCTCTTC	1 cut(s)	489
BsrBI	CCGCTC	1 cut(s)	771
BsrDI	GCAATG	1 cut(s)	579
BsrI	ACTGG	3 cut(s)	146, 869, 1092
BssECI	CCNNGG	2 cut(s)	167, 495
BssMI	GATC	4 cut(s)	637, 697, 912, 1123
BssT1I	CCWWGG	2 cut(s)	167, 495
Bst2UI	CCWGG	2 cut(s)	648, 889
Bst6I	CTCTTC	2 cut(s)	39, 489
BstC8I	GCNNGC	2 cut(s)	31, 406
BstDEI	CTNAG	3 cut(s)	90, 239, 658
BstDSI	CCRYGG	1 cut(s)	167
BstEII	GGTNACC	1 cut(s)	1165
BstF5I	GGATG	3 cut(s)	136, 311, 967
BstKTI	GATC	4 cut(s)	640, 700, 915, 1126
BstMAI	GTCTC	3 cut(s)	240, 661, 663
BstMBI	GATC	4 cut(s)	637, 697, 912, 1123
BstMWI	GCNNNNNNNGC	1 cut(s)	251
BstNI	CCWGG	2 cut(s)	648, 889
BstNSI	RCATGY	1 cut(s)	33
BstPI	GGTNACC	1 cut(s)	1165
BstSCI	CCNGG	2 cut(s)	646, 887
BstSFI	CTRYAG	1 cut(s)	516
BstX2I	RGATCY	2 cut(s)	697, 912
BstYI	RGATCY	2 cut(s)	697, 912
BsuI	GTATCC	1 cut(s)	324
BsuRI	GGCC	1 cut(s)	1155
BtgI	CCRYGG	1 cut(s)	167
BtgZI	GCGATG	1 cut(s)	1055
BtrI	CACGTC	1 cut(s)	80
BtsCI	GGATG	3 cut(s)	136, 311, 967
BtsI	GCAGTG	1 cut(s)	333
BtsIMutI	CAGTG	8 cut(s)	153, 247, 333, 381, 724, 876, 1051, 1099
Cac8I	GCNNGC	2 cut(s)	31, 406
CsiI	ACCWGGT	1 cut(s)	887
Csp6I	GTAC	2 cut(s)	19, 361
CviAII	CATG	7 cut(s)	30, 168, 351, 459, 775, 935, 1036
CviQI	GTAC	2 cut(s)	19, 361
DdeI	CTNAG	3 cut(s)	90, 239, 658
DpnI	GATC	4 cut(s)	639, 699, 914, 1125
DpnII	GATC	4 cut(s)	637, 697, 912, 1123
DraI	TTTAAA	2 cut(s)	298, 439
DrdI	GACNNNNNNGTC	1 cut(s)	761
DseDI	GACNNNNNNGTC	1 cut(s)	761
Eam1104I	CTCTTC	2 cut(s)	39, 489
EarI	CTCTTC	2 cut(s)	39, 489
Eco130I	CCWWGG	2 cut(s)	167, 495
Eco91I	GGTNACC	1 cut(s)	1165
EcoO65I	GGTNACC	1 cut(s)	1165
EcoRII	CCWGG	2 cut(s)	646, 887
EcoT14I	CCWWGG	2 cut(s)	167, 495
ErhI	CCWWGG	2 cut(s)	167, 495
FaeI	CATG	7 cut(s)	33, 171, 354, 462, 778, 938, 1039
FaqI	GGGAC	1 cut(s)	728
FatI	CATG	7 cut(s)	29, 167, 350, 458, 774, 934, 1035
FauI	CCCGC	1 cut(s)	809
FbaI	TGATCA	1 cut(s)	1123
Fnu4HI	GCNGC	2 cut(s)	772, 1075
FokI	GGATG	3 cut(s)	123, 318, 974
Fsp4HI	GCNGC	2 cut(s)	772, 1075
FspBI	CTAG	1 cut(s)	401
GluI	GCNGC	2 cut(s)	772, 1075
HaeIII	GGCC	1 cut(s)	1155
Hin1II	CATG	7 cut(s)	33, 171, 354, 462, 778, 938, 1039
HindIII	AAGCTT	1 cut(s)	267
HinfI	GANTC	2 cut(s)	94, 1000
HphI	GGTGA	5 cut(s)	302, 587, 877, 975, 1009
Hpy166II	GTNNAC	5 cut(s)	151, 595, 722, 846, 885
Hpy188I	TCNGA	6 cut(s)	118, 209, 785, 919, 1128, 1151
Hpy188III	TCNNGA	8 cut(s)	160, 551, 701, 752, 766, 797, 1024, 1083
Hpy8I	GTNNAC	5 cut(s)	151, 595, 722, 846, 885
HpyAV	CCTTC	5 cut(s)	9, 68, 281, 871, 988
HpyCH4IV	ACGT	1 cut(s)	79
HpyCH4V	TGCA	7 cut(s)	29, 83, 326, 532, 832, 1055, 1097
HpyF10VI	GCNNNNNNNGC	1 cut(s)	251
HpyF3I	CTNAG	3 cut(s)	90, 239, 658
HpySE526I	ACGT	1 cut(s)	79
Hsp92II	CATG	7 cut(s)	33, 171, 354, 462, 778, 938, 1039
Ksp22I	TGATCA	1 cut(s)	1123
Kzo9I	GATC	4 cut(s)	637, 697, 912, 1123
LguI	GCTCTTC	1 cut(s)	489
LweI	GCATC	2 cut(s)	145, 1078
MabI	ACCWGGT	1 cut(s)	887
MaeI	CTAG	1 cut(s)	401
MaeII	ACGT	1 cut(s)	79
MaeIII	GTNAC	5 cut(s)	290, 385, 850, 1040, 1165
MalI	GATC	4 cut(s)	639, 699, 914, 1125
MbiI	CCGCTC	1 cut(s)	771
MboI	GATC	4 cut(s)	637, 697, 912, 1123
MboII	GAAGA	2 cut(s)	56, 476
MfeI	CAATTG	2 cut(s)	444, 477
MflI	RGATCY	2 cut(s)	697, 912
MluCI	AATT	6 cut(s)	203, 210, 228, 337, 444, 477
MnlI	CCTC	8 cut(s)	42, 595, 697, 700, 752, 951, 1029, 1145
MroXI	GAANNNNTTC	2 cut(s)	792, 881
MseI	TTAA	7 cut(s)	132, 227, 231, 297, 438, 537, 927
MslI	CAYNNNNRTG	1 cut(s)	600
MspR9I	CCNGG	2 cut(s)	648, 889
MunI	CAATTG	2 cut(s)	444, 477
MvaI	CCWGG	2 cut(s)	648, 889
MwoI	GCNNNNNNNGC	1 cut(s)	251
NcoI	CCATGG	1 cut(s)	167
NdeII	GATC	4 cut(s)	637, 697, 912, 1123
NlaIII	CATG	7 cut(s)	33, 171, 354, 462, 778, 938, 1039
NlaIV	GGNNCC	2 cut(s)	127, 699
NmuCI	GTSAC	2 cut(s)	290, 1040
NspI	RCATGY	1 cut(s)	33
PacI	TTAATTAA	1 cut(s)	231
PaeI	GCATGC	1 cut(s)	33
PciSI	GCTCTTC	1 cut(s)	489
PdmI	GAANNNNTTC	2 cut(s)	792, 881
PfeI	GAWTC	2 cut(s)	94, 1000
PfoI	TCCNGGA	1 cut(s)	646
PkrI	GCNGC	2 cut(s)	773, 1076
Psp6I	CCWGG	2 cut(s)	646, 887
PspEI	GGTNACC	1 cut(s)	1165
PspGI	CCWGG	2 cut(s)	646, 887
PspN4I	GGNNCC	2 cut(s)	127, 699
PsuI	RGATCY	2 cut(s)	697, 912
RsaI	GTAC	2 cut(s)	20, 362
RsaNI	GTAC	2 cut(s)	19, 361
RseI	CAYNNNNRTG	1 cut(s)	600
SapI	GCTCTTC	1 cut(s)	489
SaqAI	TTAA	7 cut(s)	132, 227, 231, 297, 438, 537, 927
SatI	GCNGC	2 cut(s)	772, 1075
Sau3AI	GATC	4 cut(s)	637, 697, 912, 1123
ScrFI	CCNGG	2 cut(s)	648, 889
SexAI	ACCWGGT	1 cut(s)	887
SfaNI	GCATC	2 cut(s)	145, 1078
SfcI	CTRYAG	1 cut(s)	516
SmiI	ATTTAAAT	1 cut(s)	439
SmiMI	CAYNNNNRTG	1 cut(s)	600
SmlI	CTYRAG	1 cut(s)	522
SmoI	CTYRAG	1 cut(s)	522
SphI	GCATGC	1 cut(s)	33
Sse9I	AATT	6 cut(s)	203, 210, 228, 337, 444, 477
SsiI	CCGC	4 cut(s)	771, 816, 1075, 1104
SspMI	CTAG	1 cut(s)	401
StyD4I	CCNGG	2 cut(s)	646, 887
StyI	CCWWGG	2 cut(s)	167, 495
SwaI	ATTTAAAT	1 cut(s)	439
TaiI	ACGT	1 cut(s)	82
TaqI	TCGA	1 cut(s)	796
TasI	AATT	6 cut(s)	203, 210, 228, 337, 444, 477
TatI	WGTACW	1 cut(s)	360
TauI	GCSGC	2 cut(s)	774, 1077
TfiI	GAWTC	2 cut(s)	94, 1000
Tru1I	TTAA	7 cut(s)	132, 227, 231, 297, 438, 537, 927
Tru9I	TTAA	7 cut(s)	132, 227, 231, 297, 438, 537, 927
TscAI	CASTG	8 cut(s)	153, 247, 333, 388, 724, 876, 1051, 1099
TseFI	GTSAC	2 cut(s)	290, 1040
Tsp45I	GTSAC	2 cut(s)	290, 1040
TspDTI	ATGAA	3 cut(s)	411, 547, 796
TspGWI	ACGGA	2 cut(s)	1006, 1044
TspRI	CASTG	8 cut(s)	153, 247, 333, 388, 724, 876, 1051, 1099
XapI	RAATTY	2 cut(s)	203, 337
XceI	RCATGY	1 cut(s)	33
XmnI	GAANNNNTTC	2 cut(s)	792, 881
XspI	CTAG	1 cut(s)	401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.