MD05G1133900.v1.1

Transmembrane protein 184 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0011477
Physical Location & Seq
Reverse (-)
26245712 .. 26251900
6189 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1133900.v1.1.491

Sequence Viewer

Length: 1464 bp
ATGAAGATAACACCATTTCTCGAATTCATTACCCAGTTGGCCTACACACCTCCTACGTGGGCAAGTCTAGTTTGTGGTGTATTTGTACTCATCACTCTCACCCTTTCAATTTATCTTGTATTTGAGCACCTTTCTGCATACAAAAATCCTGAGGAGCAAAAGTTTTTAATTGGTGTTGTCCTCATGGTTCCGTGCTATGCAATAGAATCATTAGTATCTTTATTGAACCCTTCGATAAGCGTTTATTGCGAGATTCTACGGGATTGCTATGAATCCTTTGCCATGTATTGCTTTGGAAGGTACCTGGTTGCATGCTTGGGTGGGGAAGAGAGGACTGTTGAATTCATGGAAAGGGAAGGACGTGCAAGTTCTAAGACTCCCCTATTAGAACACAGTTCTGAAATGAGAACTGTTAAGCATCCTTTTCCAATGAACTATATCTTGAAACCATGGAAACTTGGTCAATGGTTGTACCAAGTTGTCAAATTCGGAATTGTTCAGTATATGTTAATTAAGTCTCTCAGTGCTATTGTAGCAGTTATCCTTGAAGCTTTTGGTGTATACTGTGAAGGTGAATTTAAATGGGGATGTGGGTATCCTTATATTGCGGTGGTTCTGAATTTTAGTCAGTCATGGGCTTTGTACTGTCTTGTTCAGTTTTACGCTGTTACAAAAGATGAACTAGCTCGCATAAAACCATTAGCCAAGTTTTTGACATTTAAATCAATTGTGTTTTTGACATGGTGGCAAGGTGTGGCAATTGCTCTTCTCTATGCCTTGGGTTTGTTCAAAAGCCCTATAGCTGAAGGCTTGCAGTTTAAGACAAGTGTTCAAGACTTCATCGTTTCTATAGAGATGGGCATTGCTTCGGTTGTTCACCTATATGTTTTTCCTGCCAAACCTTATGAGATGATGGGAGATCGTTTCCCTGGAACTGTTTCTGTTCTTGGAGACTATGTATCGGCTGACTGTCCTTTGGATCCGGAGGAGGTTAGGGACAGTGAACGCCCCACAAAGCTACGCCTCCCCACTCCTAACATTGATGTCAAGAGCGGCATGACCATCAGAGAGAGTGTTCGGGACGTTTTTATTGGTGGCGGGGGATATATTGTGCAAGATGTGAAGTTCACAGTAACACAGGCAGTGGAGCCGGTAGAGAAGGGGTTCACCAGGTTCAACGAGAAGCTACACAAGATCTCCCAAAACATTAAGAAACATGACAAGGAGAAACGAAAGACAAGGGATGACAGTTGTATATCCACGTCACCTACACGGAAGGTGATTCGTGGGATAGACGACCCTCTCTTGAATGGAAGCATGAGTGACAGTGGGGTTGCAAGGGTAAAGAGGCCTCATCGCCGCAAATCTGCATCTACTAGTGCAGAAAGCGGTGGAGAGAGCAGTAGTGATCAGAGTTATGGTGGGTTTCAGGTAAGAGGCCGTCGGTGGGTAACCAAAGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Solute_trans_a

Protein Analysis

488

Amino Acids

54.96

Weight (kDa)

8.68

Isoelectric Point (pI)

37.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Solute_trans_a PF03619 23 - 302 1.5e-93 Organic solute transporter Ostalpha
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011477)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38360
fragaria_vesca FvH4_2g16560 FvH4_2g16560
malus_domestica MD05G1133900.v1.1 MD10G1138900.v1.1
prunus_persica Prupe.8G177700_v2.0.a1
pyrus_communis pycom05g13070 pycom10g11810
rosa_chinensis RchiOBHm_Chr6g0280631
rosa_laevigata RLG00000013042
rosa_multiflora Rmu_sc0000976.1_g000001
rosa_roxburghii Rroxscaffold_7G00187860
rosa_rugosa Rorug06G0133000 Rorug06G0133100 Rorug06G0133200
rosa_samantha Rh6AG245600 Rh6BG248000 Rh6CG249400 Rh6DG240600
rosa_wichuraiana Rw6G021260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 300
AccB1I GGYRCC 1 cut(s) 300
AccBSI CCGCTC 1 cut(s) 1053
AccI GTMKAC 1 cut(s) 561
AccIII TCCGGA 1 cut(s) 982
AciI CCGC 5 cut(s) 608, 1053, 1098, 1360, 1389
AclWI GGATC 2 cut(s) 974, 987
AcsI RAATTY 5 cut(s) 23, 341, 485, 575, 619
AcuI CTGAAG 1 cut(s) 825
AfaI GTAC 4 cut(s) 87, 302, 473, 644
AfiI CCNNNNNNNGG 1 cut(s) 1447
AgsI TTSAA 9 cut(s) 108, 226, 341, 445, 548, 790, 833, 1177, 1309
AhlI ACTAGT 1 cut(s) 1376
AjiI CACGTC 2 cut(s) 362, 1263
AjnI CCWGG 3 cut(s) 303, 928, 1169
AluBI AGCT 5 cut(s) 551, 686, 803, 1018, 1186
AluI AGCT 5 cut(s) 551, 686, 803, 1018, 1186
Alw21I GWGCWC 1 cut(s) 129
Alw26I GTCTC 2 cut(s) 522, 945
AlwI GGATC 2 cut(s) 974, 987
Aor13HI TCCGGA 1 cut(s) 982
AoxI GGCC 3 cut(s) 39, 1349, 1438
ApoI RAATTY 5 cut(s) 23, 341, 485, 575, 619
Asp700I GAANNNNTTC 2 cut(s) 937, 1163
Asp718I GGTACC 1 cut(s) 300
AsuHPI GGTGA 6 cut(s) 91, 584, 869, 1159, 1257, 1291
AxyI CCTNAGG 1 cut(s) 150
BamHI GGATCC 1 cut(s) 979
BanI GGYRCC 1 cut(s) 300
Bbv12I GWGCWC 1 cut(s) 129
BccI CCATC 3 cut(s) 850, 907, 1070
BceAI ACGGC 1 cut(s) 1425
BciT130I CCWGG 3 cut(s) 305, 930, 1171
BciVI GTATCC 1 cut(s) 606
BclI TGATCA 1 cut(s) 1408
BcoDI GTCTC 2 cut(s) 522, 945
BcuI ACTAGT 1 cut(s) 1376
BfaI CTAG 3 cut(s) 68, 683, 1377
BfmI CTRYAG 2 cut(s) 798, 849
BfuI GTATCC 1 cut(s) 606
BglII AGATCT 1 cut(s) 1194
BisI GCNGC 2 cut(s) 1054, 1360
BlsI GCNGC 2 cut(s) 1055, 1361
Bme1390I CCNGG 3 cut(s) 305, 930, 1171
BmgBI CACGTC 2 cut(s) 362, 1263
BmiI GGNNCC 4 cut(s) 189, 302, 981, 1149
BmrFI CCNGG 3 cut(s) 305, 930, 1171
BmrI ACTGGG 1 cut(s) 28
BmsI GCATC 2 cut(s) 427, 1379
BmuI ACTGGG 1 cut(s) 28
BsaAI YACGTR 1 cut(s) 57
BsaJI CCNNGG 3 cut(s) 449, 777, 928
BsaWI WCCGGW 1 cut(s) 982
BsaXI ACNNNNNCTCC 6 cut(s) 146, 176, 942, 972, 1181, 1211
Bsc4I CCNNNNNNNGG 1 cut(s) 1447
Bse118I RCCGGY 1 cut(s) 1150
Bse1I ACTGG 1 cut(s) 34
Bse21I CCTNAGG 1 cut(s) 150
Bse3DI GCAATG 1 cut(s) 861
BseAI TCCGGA 1 cut(s) 982
BseBI CCWGG 3 cut(s) 305, 930, 1171
BseDI CCNNGG 3 cut(s) 449, 777, 928
BseGI GGATG 3 cut(s) 418, 593, 1249
BseLI CCNNNNNNNGG 1 cut(s) 1447
BseMI GCAATG 1 cut(s) 861
BseMII CTCAG 2 cut(s) 141, 535
BseNI ACTGG 1 cut(s) 34
BseRI GAGGAG 2 cut(s) 167, 1001
BsgI GTGCAG 1 cut(s) 1401
BshFI GGCC 3 cut(s) 41, 1351, 1440
BshNI GGYRCC 1 cut(s) 300
BsiHKAI GWGCWC 1 cut(s) 129
BsiSI CCGG 2 cut(s) 983, 1151
BslFI GGGAC 2 cut(s) 1010, 1094
BslI CCNNNNNNNGG 1 cut(s) 1447
BsmAI GTCTC 2 cut(s) 522, 945
BsmFI GGGAC 2 cut(s) 1010, 1094
BsnI GGCC 3 cut(s) 41, 1351, 1440
Bsp1286I GDGCHC 1 cut(s) 129
Bsp13I TCCGGA 1 cut(s) 982
Bsp143I GATC 4 cut(s) 919, 979, 1194, 1408
Bsp19I CCATGG 1 cut(s) 449
BspACI CCGC 5 cut(s) 608, 1053, 1098, 1360, 1389
BspANI GGCC 3 cut(s) 41, 1351, 1440
BspCNI CTCAG 2 cut(s) 142, 534
BspEI TCCGGA 1 cut(s) 982
BspLI GGNNCC 4 cut(s) 189, 302, 981, 1149
BspPI GGATC 2 cut(s) 974, 987
BspQI GCTCTTC 1 cut(s) 771
BspT107I GGYRCC 1 cut(s) 300
BsrBI CCGCTC 1 cut(s) 1053
BsrDI GCAATG 1 cut(s) 861
BsrFI RCCGGY 1 cut(s) 1150
BsrI ACTGG 1 cut(s) 34
BssAI RCCGGY 1 cut(s) 1150
BssECI CCNNGG 3 cut(s) 449, 777, 928
BssMI GATC 4 cut(s) 919, 979, 1194, 1408
BssNAI GTATAC 1 cut(s) 562
BssT1I CCWWGG 2 cut(s) 449, 777
Bst1107I GTATAC 1 cut(s) 562
Bst2UI CCWGG 3 cut(s) 305, 930, 1171
Bst6I CTCTTC 2 cut(s) 321, 771
BstBAI YACGTR 1 cut(s) 57
BstC8I GCNNGC 3 cut(s) 313, 688, 812
BstDEI CTNAG 3 cut(s) 150, 372, 521
BstDSI CCRYGG 1 cut(s) 449
BstEII GGTNACC 1 cut(s) 1450
BstF5I GGATG 3 cut(s) 418, 593, 1249
BstKTI GATC 4 cut(s) 922, 982, 1197, 1411
BstMAI GTCTC 2 cut(s) 522, 945
BstMBI GATC 4 cut(s) 919, 979, 1194, 1408
BstMWI GCNNNNNNNGC 2 cut(s) 246, 533
BstNI CCWGG 3 cut(s) 305, 930, 1171
BstNSI RCATGY 1 cut(s) 315
BstPI GGTNACC 1 cut(s) 1450
BstSCI CCNGG 3 cut(s) 303, 928, 1169
BstSFI CTRYAG 2 cut(s) 798, 849
BstX2I RGATCY 2 cut(s) 979, 1194
BstYI RGATCY 2 cut(s) 979, 1194
BstZ17I GTATAC 1 cut(s) 562
Bsu36I CCTNAGG 1 cut(s) 150
BsuI GTATCC 1 cut(s) 606
BsuRI GGCC 3 cut(s) 41, 1351, 1440
BtgI CCRYGG 1 cut(s) 449
BtgZI GCGATG 1 cut(s) 1340
BtrI CACGTC 2 cut(s) 362, 1263
BtsCI GGATG 3 cut(s) 418, 593, 1249
BtsI GCAGTG 1 cut(s) 1149
BtsIMutI CAGTG 4 cut(s) 529, 1006, 1149, 1333
Cac8I GCNNGC 3 cut(s) 313, 688, 812
Cfr10I RCCGGY 1 cut(s) 1150
CsiI ACCWGGT 2 cut(s) 303, 1169
Csp6I GTAC 4 cut(s) 86, 301, 472, 643
CviQI GTAC 4 cut(s) 86, 301, 472, 643
DdeI CTNAG 3 cut(s) 150, 372, 521
DpnI GATC 4 cut(s) 921, 981, 1196, 1410
DpnII GATC 4 cut(s) 919, 979, 1194, 1408
DraI TTTAAA 2 cut(s) 580, 721
Eam1104I CTCTTC 2 cut(s) 321, 771
EarI CTCTTC 2 cut(s) 321, 771
Eco130I CCWWGG 2 cut(s) 449, 777
Eco147I AGGCCT 1 cut(s) 1351
Eco57I CTGAAG 1 cut(s) 825
Eco81I CCTNAGG 1 cut(s) 150
Eco91I GGTNACC 1 cut(s) 1450
EcoO65I GGTNACC 1 cut(s) 1450
EcoRI GAATTC 2 cut(s) 23, 341
EcoRII CCWGG 3 cut(s) 303, 928, 1169
EcoT14I CCWWGG 2 cut(s) 449, 777
ErhI CCWWGG 2 cut(s) 449, 777
FaqI GGGAC 2 cut(s) 1010, 1094
FauI CCCGC 1 cut(s) 1091
FbaI TGATCA 1 cut(s) 1408
FblI GTMKAC 1 cut(s) 561
Fnu4HI GCNGC 2 cut(s) 1054, 1360
FokI GGATG 3 cut(s) 405, 600, 1256
Fsp4HI GCNGC 2 cut(s) 1054, 1360
FspBI CTAG 3 cut(s) 68, 683, 1377
GluI GCNGC 2 cut(s) 1054, 1360
HaeIII GGCC 3 cut(s) 41, 1351, 1440
HapII CCGG 2 cut(s) 983, 1151
HindIII AAGCTT 1 cut(s) 549
HinfI GANTC 5 cut(s) 206, 253, 272, 376, 1282
HpaII CCGG 2 cut(s) 983, 1151
HphI GGTGA 6 cut(s) 91, 584, 869, 1159, 1257, 1291
Hpy166II GTNNAC 5 cut(s) 562, 877, 1004, 1128, 1167
Hpy188I TCNGA 5 cut(s) 400, 491, 618, 1067, 1413
Hpy188III TCNNGA 8 cut(s) 20, 149, 442, 833, 983, 1048, 1079, 1306
Hpy8I GTNNAC 5 cut(s) 562, 877, 1004, 1128, 1167
Hpy99I CGWCG 1 cut(s) 1446
HpyAV CCTTC 7 cut(s) 240, 291, 350, 563, 800, 1153, 1270
HpyCH4IV ACGT 4 cut(s) 56, 361, 1083, 1262
HpyCH4V TGCA 9 cut(s) 137, 200, 311, 365, 814, 1114, 1337, 1370, 1382
HpyF10VI GCNNNNNNNGC 2 cut(s) 246, 533
HpyF3I CTNAG 3 cut(s) 150, 372, 521
HpySE526I ACGT 4 cut(s) 56, 361, 1083, 1262
Kpn2I TCCGGA 1 cut(s) 982
KpnI GGTACC 1 cut(s) 304
Ksp22I TGATCA 1 cut(s) 1408
Kzo9I GATC 4 cut(s) 919, 979, 1194, 1408
LguI GCTCTTC 1 cut(s) 771
LmnI GCTCC 2 cut(s) 154, 1147
LweI GCATC 2 cut(s) 427, 1379
MabI ACCWGGT 2 cut(s) 303, 1169
MaeI CTAG 3 cut(s) 68, 683, 1377
MaeII ACGT 4 cut(s) 56, 361, 1083, 1262
MaeIII GTNAC 5 cut(s) 667, 1132, 1263, 1322, 1450
MalI GATC 4 cut(s) 921, 981, 1196, 1410
MbiI CCGCTC 1 cut(s) 1053
MboI GATC 4 cut(s) 919, 979, 1194, 1408
MboII GAAGA 3 cut(s) 16, 338, 758
MfeI CAATTG 2 cut(s) 726, 759
MflI RGATCY 2 cut(s) 979, 1194
MhlI GDGCHC 1 cut(s) 129
MlyI GAGTC 1 cut(s) 370
MroI TCCGGA 1 cut(s) 982
MroXI GAANNNNTTC 2 cut(s) 937, 1163
MseI TTAA 8 cut(s) 167, 414, 509, 513, 579, 720, 819, 1209
MslI CAYNNNNRTG 1 cut(s) 882
MspI CCGG 2 cut(s) 983, 1151
MspR9I CCNGG 3 cut(s) 305, 930, 1171
MunI CAATTG 2 cut(s) 726, 759
MvaI CCWGG 3 cut(s) 305, 930, 1171
MwoI GCNNNNNNNGC 2 cut(s) 246, 533
NcoI CCATGG 1 cut(s) 449
NdeII GATC 4 cut(s) 919, 979, 1194, 1408
NlaIV GGNNCC 4 cut(s) 189, 302, 981, 1149
NmuCI GTSAC 2 cut(s) 1263, 1322
NspI RCATGY 1 cut(s) 315
PacI TTAATTAA 1 cut(s) 513
PaeI GCATGC 1 cut(s) 315
PceI AGGCCT 1 cut(s) 1351
PciSI GCTCTTC 1 cut(s) 771
PdmI GAANNNNTTC 2 cut(s) 937, 1163
PfeI GAWTC 4 cut(s) 206, 253, 272, 1282
PkrI GCNGC 2 cut(s) 1055, 1361
PleI GAGTC 1 cut(s) 370
PpsI GAGTC 1 cut(s) 370
Ppu21I YACGTR 1 cut(s) 57
Psp6I CCWGG 3 cut(s) 303, 928, 1169
PspEI GGTNACC 1 cut(s) 1450
PspGI CCWGG 3 cut(s) 303, 928, 1169
PspN4I GGNNCC 4 cut(s) 189, 302, 981, 1149
PsuI RGATCY 2 cut(s) 979, 1194
RsaI GTAC 4 cut(s) 87, 302, 473, 644
RsaNI GTAC 4 cut(s) 86, 301, 472, 643
RseI CAYNNNNRTG 1 cut(s) 882
SapI GCTCTTC 1 cut(s) 771
SaqAI TTAA 8 cut(s) 167, 414, 509, 513, 579, 720, 819, 1209
SatI GCNGC 2 cut(s) 1054, 1360
Sau3AI GATC 4 cut(s) 919, 979, 1194, 1408
SchI GAGTC 1 cut(s) 370
ScrFI CCNGG 3 cut(s) 305, 930, 1171
SduI GDGCHC 1 cut(s) 129
SexAI ACCWGGT 2 cut(s) 303, 1169
SfaNI GCATC 2 cut(s) 427, 1379
SfcI CTRYAG 2 cut(s) 798, 849
SmiI ATTTAAAT 2 cut(s) 580, 721
SmiMI CAYNNNNRTG 1 cut(s) 882
SpeI ACTAGT 1 cut(s) 1376
SphI GCATGC 1 cut(s) 315
SseBI AGGCCT 1 cut(s) 1351
SsiI CCGC 5 cut(s) 608, 1053, 1098, 1360, 1389
SspMI CTAG 3 cut(s) 68, 683, 1377
StuI AGGCCT 1 cut(s) 1351
StyD4I CCNGG 3 cut(s) 303, 928, 1169
StyI CCWWGG 2 cut(s) 449, 777
SwaI ATTTAAAT 2 cut(s) 580, 721
TaiI ACGT 4 cut(s) 59, 364, 1086, 1265
TaqI TCGA 2 cut(s) 21, 233
TatI WGTACW 2 cut(s) 85, 642
TauI GCSGC 2 cut(s) 1056, 1362
TfiI GAWTC 4 cut(s) 206, 253, 272, 1282
Tru1I TTAA 8 cut(s) 167, 414, 509, 513, 579, 720, 819, 1209
Tru9I TTAA 8 cut(s) 167, 414, 509, 513, 579, 720, 819, 1209
TscAI CASTG 4 cut(s) 529, 1006, 1149, 1333
TseFI GTSAC 2 cut(s) 1263, 1322
Tsp45I GTSAC 2 cut(s) 1263, 1322
TspDTI ATGAA 7 cut(s) 16, 17, 285, 334, 446, 693, 829
TspGWI ACGGA 2 cut(s) 180, 1288
TspRI CASTG 4 cut(s) 529, 1006, 1149, 1333
XapI RAATTY 5 cut(s) 23, 341, 485, 575, 619
XceI RCATGY 1 cut(s) 315
XmiI GTMKAC 1 cut(s) 561
XmnI GAANNNNTTC 2 cut(s) 937, 1163
XspI CTAG 3 cut(s) 68, 683, 1377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.