FvH4_2g16560

Transmembrane protein 184 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0011477
Physical Location & Seq
Reverse (-)
14435909 .. 14442099
6191 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g16560.t1

Sequence Viewer

Length: 1464 bp
ATGAAGATCACACCATTTTTCTATCTCACGACCCGGTTGGCCTACACAGCTCCTACATGGGCAACTCTAACTTGTGGAGTGTTTGTACTCATCACGCTTACACTTTCAATTTATCTTCTCTTTGAACACCTTTCTGCATACAAGAATCCTGAGGAACAAAAGTTTTTAATTGGTGTTATCCTCATGGTTCCATGCTATGCAGTAGAGTCATTAGTGTCTTTGGTGAACCCTTCAATAAGTGTTGATTGCGCAATTCTGCGGGATTGTTACGAATCTTTTGCCATGTATTGCTTTGGAAGATACCTCGTTGCATGTTTAGGTGGTGAAGAAAGGACAATCGAGTTTATGGAAAGACAAGGACGAGCAAGTTATAAGACTCCCCTATTAGTAGACAGTTCTGGAAACGGAACTGTCACACATCCTTTTCCAATGAACTTAATCTTGAAACCATGGAAACTTGGTCAAGGATTTTACCAACTTGTCAAATTCGGAATCGTTCAGTATATGATAACCAAGTCTCTCAGTGCTATTTTAGCAGTTATACTTGAAGCTTTTGGTGTATACTGTGATGGAGAATTCAAATGGGGATGTGGGTATCCTTATATCGCAGTGGTTCTAAATTTTAGTCAGTCATGGGCTTTGTACTGTCTAGTTCAGTTTTATACCGTTACGAAAGATGAACTAGCTCATATAAAGCCATTATACAAGTTTCTGACTTTTAAGTCAATTGTGTTCTTAACATGGTGGCAAGGTGTGGCAATTGCTCTTCTGTACGCTCTTGGTTTGTTCAAAAGTCCCATAGCTCAAGGCTTACAATTTAAGTCAAGTGTTCAAGACTTCATCATTTGTATAGAGATGGGCATTGCTTCTGTCGTTCACCTGTATGTTTTTCCTGCGAAGCCATATGAACTGATGGGAGATCGCTTCCCTGGGAGTGTCTCAGTTCTTGGAGACTATGTGTCTGCTGACTGTCCTTTGGATCCTGATGAAGTAAGGGACAGTGAACGTCCTACAAAGCTACGCCTCCCAACTCCTGACATTGATGTTAGGAGTGGAATGACCATAAGAGAAAGCGTTCGGGATGTTTTTATCGGTGGTGGGGGATATATTGTCAGCGATGTGAAGTTTACAGTAACACAGGCAGTTGAGCCTGTAGAGAAGGGGTTCACAAGGTTCAATGAGAAGTTACACAAGATCTCTCAAAACATTAAGAGACAGGACAAGGAGAAAAGGAAAACAAAGGATGACAGTTGTATTTCCACATCATCACCTGTAGGGAAGGTGATTCGTGGGATAGATGACCCTCTCTTGAATGGAAGTACGAGTGATAGTGGTGTATCCAGGGTAAAGAAGCATCGCCGGAAATCAGGTTACACCAGTGCAGAAAGCGGTGGAGAGAGCAGCAGTGACCAAAGTTATGGTGGGTATCAGGTCAGAGGCCGTAGGTGGGTCACAAAAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Solute_trans_a

Protein Analysis

488

Amino Acids

54.55

Weight (kDa)

8.64

Isoelectric Point (pI)

38.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Solute_trans_a PF03619 22 - 302 9.2e-93 Organic solute transporter Ostalpha
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011477)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38360
fragaria_vesca FvH4_2g16560 FvH4_2g16560
malus_domestica MD05G1133900.v1.1 MD10G1138900.v1.1
prunus_persica Prupe.8G177700_v2.0.a1
pyrus_communis pycom05g13070 pycom10g11810
rosa_chinensis RchiOBHm_Chr6g0280631
rosa_laevigata RLG00000013042
rosa_multiflora Rmu_sc0000976.1_g000001
rosa_roxburghii Rroxscaffold_7G00187860
rosa_rugosa Rorug06G0133000 Rorug06G0133100 Rorug06G0133200
rosa_samantha Rh6AG245600 Rh6BG248000 Rh6CG249400 Rh6DG240600
rosa_wichuraiana Rw6G021260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 372
AasI GACNNNNNNGTC 1 cut(s) 721
Acc16I TGCGCA 1 cut(s) 250
AccI GTMKAC 2 cut(s) 390, 561
AciI CCGC 2 cut(s) 259, 1389
AclWI GGATC 2 cut(s) 974, 987
AcsI RAATTY 3 cut(s) 485, 575, 619
AfaI GTAC 4 cut(s) 87, 644, 773, 1321
AfiI CCNNNNNNNGG 1 cut(s) 1447
AhdI GACNNNNNGTC 1 cut(s) 958
AjnI CCWGG 2 cut(s) 928, 1340
AluBI AGCT 5 cut(s) 50, 551, 686, 803, 1018
AluI AGCT 5 cut(s) 50, 551, 686, 803, 1018
Alw26I GTCTC 4 cut(s) 522, 943, 945, 1207
AlwI GGATC 2 cut(s) 974, 987
AoxI GGCC 2 cut(s) 39, 1438
ApeKI GCWGC 1 cut(s) 1401
ApoI RAATTY 3 cut(s) 485, 575, 619
Asp700I GAANNNNTTC 2 cut(s) 1074, 1163
AspLEI GCGC 1 cut(s) 251
AsuC2I CCSGG 1 cut(s) 34
AsuHPI GGTGA 5 cut(s) 235, 335, 869, 1260, 1294
AxyI CCTNAGG 1 cut(s) 150
BamHI GGATCC 1 cut(s) 979
BbvI GCAGC 1 cut(s) 1413
BccI CCATC 3 cut(s) 563, 850, 907
BceAI ACGGC 1 cut(s) 1425
BcgI CGANNNNNNTGC 2 cut(s) 260, 294
BciT130I CCWGG 2 cut(s) 930, 1342
BciVI GTATCC 2 cut(s) 606, 1348
BcnI CCSGG 1 cut(s) 34
BcoDI GTCTC 4 cut(s) 522, 943, 945, 1207
BfaI CTAG 2 cut(s) 650, 683
BfmI CTRYAG 2 cut(s) 1152, 1272
BfuI GTATCC 2 cut(s) 606, 1348
BglII AGATCT 1 cut(s) 1194
BisI GCNGC 1 cut(s) 1402
BlsI GCNGC 1 cut(s) 1403
Bme1390I CCNGG 3 cut(s) 34, 930, 1342
BmeRI GACNNNNNGTC 1 cut(s) 958
BmiI GGNNCC 2 cut(s) 189, 981
BmrFI CCNGG 3 cut(s) 34, 930, 1342
BmsI GCATC 1 cut(s) 1363
BpuEI CTTGAG 1 cut(s) 789
BpuMI CCSGG 1 cut(s) 34
BsaJI CCNNGG 4 cut(s) 449, 928, 929, 1341
BsaXI ACNNNNNCTCC 4 cut(s) 69, 99, 942, 972
Bsc4I CCNNNNNNNGG 1 cut(s) 1447
Bse1I ACTGG 1 cut(s) 1377
Bse21I CCTNAGG 1 cut(s) 150
Bse3DI GCAATG 1 cut(s) 861
BseBI CCWGG 2 cut(s) 930, 1342
BseDI CCNNGG 4 cut(s) 449, 928, 929, 1341
BseGI GGATG 4 cut(s) 418, 593, 1087, 1249
BseLI CCNNNNNNNGG 1 cut(s) 1447
BseMI GCAATG 1 cut(s) 861
BseMII CTCAG 3 cut(s) 141, 535, 954
BseNI ACTGG 1 cut(s) 1377
BseXI GCAGC 1 cut(s) 1413
BsgI GTGCAG 1 cut(s) 1401
BshFI GGCC 2 cut(s) 41, 1440
BsiSI CCGG 2 cut(s) 34, 1360
BslFI GGGAC 2 cut(s) 780, 1010
BslI CCNNNNNNNGG 1 cut(s) 1447
BsmAI GTCTC 4 cut(s) 522, 943, 945, 1207
BsmFI GGGAC 2 cut(s) 780, 1010
BsnI GGCC 2 cut(s) 41, 1440
Bsp143I GATC 4 cut(s) 6, 919, 979, 1194
Bsp19I CCATGG 1 cut(s) 449
BspACI CCGC 2 cut(s) 259, 1389
BspANI GGCC 2 cut(s) 41, 1440
BspCNI CTCAG 3 cut(s) 142, 534, 953
BspLI GGNNCC 2 cut(s) 189, 981
BspPI GGATC 2 cut(s) 974, 987
BspQI GCTCTTC 1 cut(s) 771
BsrDI GCAATG 1 cut(s) 861
BsrI ACTGG 1 cut(s) 1377
BssECI CCNNGG 4 cut(s) 449, 928, 929, 1341
BssMI GATC 4 cut(s) 6, 919, 979, 1194
BssNAI GTATAC 1 cut(s) 562
BssT1I CCWWGG 1 cut(s) 449
Bst1107I GTATAC 1 cut(s) 562
Bst2UI CCWGG 2 cut(s) 930, 1342
Bst4CI ACNGT 9 cut(s) 395, 412, 566, 647, 667, 971, 1001, 1132, 1250
Bst6I CTCTTC 1 cut(s) 771
BstDEI CTNAG 3 cut(s) 150, 521, 940
BstDSI CCRYGG 1 cut(s) 449
BstF5I GGATG 4 cut(s) 418, 593, 1087, 1249
BstHHI GCGC 1 cut(s) 251
BstKTI GATC 4 cut(s) 9, 922, 982, 1197
BstMAI GTCTC 4 cut(s) 522, 943, 945, 1207
BstMBI GATC 4 cut(s) 6, 919, 979, 1194
BstMWI GCNNNNNNNGC 2 cut(s) 47, 533
BstNI CCWGG 2 cut(s) 930, 1342
BstNSI RCATGY 1 cut(s) 315
BstSCI CCNGG 3 cut(s) 32, 928, 1340
BstSFI CTRYAG 2 cut(s) 1152, 1272
BstV1I GCAGC 1 cut(s) 1413
BstX2I RGATCY 2 cut(s) 979, 1194
BstXI CCANNNNNNTGG 1 cut(s) 1418
BstYI RGATCY 2 cut(s) 979, 1194
BstZ17I GTATAC 1 cut(s) 562
Bsu36I CCTNAGG 1 cut(s) 150
BsuI GTATCC 2 cut(s) 606, 1348
BsuRI GGCC 2 cut(s) 41, 1440
BtgI CCRYGG 1 cut(s) 449
BtgZI GCGATG 2 cut(s) 1131, 1340
BtsCI GGATG 4 cut(s) 418, 593, 1087, 1249
BtsI GCAGTG 2 cut(s) 615, 1411
BtsIMutI CAGTG 5 cut(s) 529, 615, 1006, 1384, 1411
CfoI GCGC 1 cut(s) 251
Csp6I GTAC 4 cut(s) 86, 643, 772, 1320
CviAII CATG 8 cut(s) 57, 184, 192, 283, 312, 450, 633, 741
CviQI GTAC 4 cut(s) 86, 643, 772, 1320
DdeI CTNAG 3 cut(s) 150, 521, 940
DpnI GATC 4 cut(s) 8, 921, 981, 1196
DpnII GATC 4 cut(s) 6, 919, 979, 1194
DrdI GACNNNNNNGTC 1 cut(s) 721
DriI GACNNNNNGTC 1 cut(s) 958
DseDI GACNNNNNNGTC 1 cut(s) 721
Eam1104I CTCTTC 1 cut(s) 771
Eam1105I GACNNNNNGTC 1 cut(s) 958
EarI CTCTTC 1 cut(s) 771
Eco130I CCWWGG 1 cut(s) 449
Eco81I CCTNAGG 1 cut(s) 150
EcoRI GAATTC 1 cut(s) 575
EcoRII CCWGG 2 cut(s) 928, 1340
EcoT14I CCWWGG 1 cut(s) 449
ErhI CCWWGG 1 cut(s) 449
FaeI CATG 8 cut(s) 60, 187, 195, 286, 315, 453, 636, 744
FaqI GGGAC 2 cut(s) 780, 1010
FatI CATG 8 cut(s) 56, 183, 191, 282, 311, 449, 632, 740
FauI CCCGC 1 cut(s) 252
FauNDI CATATG 1 cut(s) 904
FblI GTMKAC 2 cut(s) 390, 561
Fnu4HI GCNGC 1 cut(s) 1402
FokI GGATG 4 cut(s) 405, 600, 1094, 1256
Fsp4HI GCNGC 1 cut(s) 1402
FspBI CTAG 2 cut(s) 650, 683
FspI TGCGCA 1 cut(s) 250
GlaI GCGC 1 cut(s) 250
GluI GCNGC 1 cut(s) 1402
HaeIII GGCC 2 cut(s) 41, 1440
HapII CCGG 2 cut(s) 34, 1360
HhaI GCGC 1 cut(s) 251
Hin1II CATG 8 cut(s) 60, 187, 195, 286, 315, 453, 636, 744
Hin6I GCGC 1 cut(s) 249
HinP1I GCGC 1 cut(s) 249
HindIII AAGCTT 1 cut(s) 549
HinfI GANTC 6 cut(s) 145, 206, 272, 376, 492, 1285
HpaII CCGG 2 cut(s) 34, 1360
HphI GGTGA 5 cut(s) 235, 335, 869, 1260, 1294
Hpy166II GTNNAC 7 cut(s) 226, 391, 562, 877, 1004, 1128, 1167
Hpy188I TCNGA 3 cut(s) 491, 714, 1436
Hpy188III TCNNGA 9 cut(s) 28, 149, 399, 442, 833, 983, 1034, 1079, 1309
Hpy8I GTNNAC 7 cut(s) 226, 391, 562, 877, 1004, 1128, 1167
HpyAV CCTTC 3 cut(s) 240, 1153, 1273
HpyCH4III ACNGT 9 cut(s) 395, 412, 566, 647, 667, 971, 1001, 1132, 1250
HpyCH4IV ACGT 1 cut(s) 1006
HpyCH4V TGCA 4 cut(s) 137, 200, 311, 1382
HpyF10VI GCNNNNNNNGC 2 cut(s) 47, 533
HpyF3I CTNAG 3 cut(s) 150, 521, 940
HpySE526I ACGT 1 cut(s) 1006
Hsp92II CATG 8 cut(s) 60, 187, 195, 286, 315, 453, 636, 744
HspAI GCGC 1 cut(s) 249
Kzo9I GATC 4 cut(s) 6, 919, 979, 1194
LguI GCTCTTC 1 cut(s) 771
LmnI GCTCC 1 cut(s) 55
Lsp1109I GCAGC 1 cut(s) 1413
LweI GCATC 1 cut(s) 1363
MaeI CTAG 2 cut(s) 650, 683
MaeII ACGT 1 cut(s) 1006
MaeIII GTNAC 8 cut(s) 266, 412, 667, 1132, 1185, 1370, 1406, 1450
MalI GATC 4 cut(s) 8, 921, 981, 1196
MboI GATC 4 cut(s) 6, 919, 979, 1194
MboII GAAGA 5 cut(s) 16, 107, 309, 338, 758
MfeI CAATTG 2 cut(s) 726, 759
MflI RGATCY 2 cut(s) 979, 1194
MluCI AATT 9 cut(s) 108, 168, 252, 485, 575, 619, 726, 759, 815
MlyI GAGTC 2 cut(s) 215, 370
MnlI CCTC 6 cut(s) 145, 191, 314, 1034, 1314, 1430
MroXI GAANNNNTTC 2 cut(s) 1074, 1163
MseI TTAA 7 cut(s) 167, 437, 720, 737, 819, 1209, 1462
MslI CAYNNNNRTG 1 cut(s) 882
MspI CCGG 2 cut(s) 34, 1360
MspR9I CCNGG 3 cut(s) 34, 930, 1342
MunI CAATTG 2 cut(s) 726, 759
MvaI CCWGG 2 cut(s) 930, 1342
MwoI GCNNNNNNNGC 2 cut(s) 47, 533
NciI CCSGG 1 cut(s) 34
NcoI CCATGG 1 cut(s) 449
NdeI CATATG 1 cut(s) 904
NdeII GATC 4 cut(s) 6, 919, 979, 1194
NlaIII CATG 8 cut(s) 60, 187, 195, 286, 315, 453, 636, 744
NlaIV GGNNCC 2 cut(s) 189, 981
NmuCI GTSAC 3 cut(s) 412, 1406, 1450
NsbI TGCGCA 1 cut(s) 250
NspI RCATGY 1 cut(s) 315
PasI CCCWGGG 1 cut(s) 929
PciSI GCTCTTC 1 cut(s) 771
PdmI GAANNNNTTC 2 cut(s) 1074, 1163
PfeI GAWTC 4 cut(s) 145, 272, 492, 1285
PkrI GCNGC 1 cut(s) 1403
PleI GAGTC 2 cut(s) 214, 370
PpsI GAGTC 2 cut(s) 214, 370
PsiI TTATAA 1 cut(s) 372
Psp6I CCWGG 2 cut(s) 928, 1340
PspGI CCWGG 2 cut(s) 928, 1340
PspN4I GGNNCC 2 cut(s) 189, 981
PsuI RGATCY 2 cut(s) 979, 1194
RsaI GTAC 4 cut(s) 87, 644, 773, 1321
RsaNI GTAC 4 cut(s) 86, 643, 772, 1320
RseI CAYNNNNRTG 1 cut(s) 882
SapI GCTCTTC 1 cut(s) 771
SaqAI TTAA 7 cut(s) 167, 437, 720, 737, 819, 1209, 1462
SatI GCNGC 1 cut(s) 1402
Sau3AI GATC 4 cut(s) 6, 919, 979, 1194
SchI GAGTC 2 cut(s) 215, 370
ScrFI CCNGG 3 cut(s) 34, 930, 1342
SfaNI GCATC 1 cut(s) 1363
SfcI CTRYAG 2 cut(s) 1152, 1272
SmiMI CAYNNNNRTG 1 cut(s) 882
SmlI CTYRAG 1 cut(s) 804
SmoI CTYRAG 1 cut(s) 804
Sse9I AATT 9 cut(s) 108, 168, 252, 485, 575, 619, 726, 759, 815
SsiI CCGC 2 cut(s) 259, 1389
SspMI CTAG 2 cut(s) 650, 683
StyD4I CCNGG 3 cut(s) 32, 928, 1340
StyI CCWWGG 1 cut(s) 449
TaaI ACNGT 9 cut(s) 395, 412, 566, 647, 667, 971, 1001, 1132, 1250
TaiI ACGT 1 cut(s) 1009
TaqI TCGA 1 cut(s) 339
TasI AATT 9 cut(s) 108, 168, 252, 485, 575, 619, 726, 759, 815
TatI WGTACW 2 cut(s) 85, 642
TfiI GAWTC 4 cut(s) 145, 272, 492, 1285
Tru1I TTAA 7 cut(s) 167, 437, 720, 737, 819, 1209, 1462
Tru9I TTAA 7 cut(s) 167, 437, 720, 737, 819, 1209, 1462
TscAI CASTG 5 cut(s) 529, 615, 1006, 1384, 1411
TseFI GTSAC 3 cut(s) 412, 1406, 1450
TseI GCWGC 1 cut(s) 1401
Tsp45I GTSAC 3 cut(s) 412, 1406, 1450
TspDTI ATGAA 6 cut(s) 17, 446, 693, 829, 921, 1002
TspGWI ACGGA 1 cut(s) 420
TspRI CASTG 5 cut(s) 529, 615, 1006, 1384, 1411
XapI RAATTY 3 cut(s) 485, 575, 619
XceI RCATGY 1 cut(s) 315
XcmI CCANNNNNNNNNTGG 1 cut(s) 1418
XmiI GTMKAC 2 cut(s) 390, 561
XmnI GAANNNNTTC 2 cut(s) 1074, 1163
XspI CTAG 2 cut(s) 650, 683
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.