pycom05g13070

Transmembrane protein 184 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0011477
Physical Location & Seq
Reverse (-)
16626633 .. 16631157
4525 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g13070.1

Sequence Viewer

Length: 1488 bp
ATGAAGATAGCACCATTTCTCGAATTCATTACCCAGTTGTCCTACACACCTCCTACGTGGGCAAGTCTAGTTTGTGGTGTATTTGTACTCATCACTCTTACCCTTTCAATTTATCTTGTATTTGAGCACCTTTCTGCATACAAAAATCCTGAGGAGCAAAAGTTTTTAATTGGTGTTGTCCTCATGGTTCCGTGCTTTGCAATAGAATCAATTCTAATTTGGTGTTCTTTTCAGTTAGTATCTTTATTGAACCCTTCGATAAGCGTTTATTGCGAGATTCTACGGGATTGCTATGAATCCTTTGCCATGTATTGCTTTGGAAGGTACCTGGTTGCATGCTTGGGTGGGGAAGAGAGGACTGTTGAATTCATGGAAAGGGAAGGACGTGCAAGTTCTAAGACTCCCCTATTAGAACACAGTTCTGAAATGGGAACTGTTAAGCATCCTTTTCCAATGAACTATATCTTGAAGCCATGGAAACTTGGCCAATGGTTGTACCAAGTTGTCAAATTTGGAATTGTTCAGTATATGTTAATTAAGTCTCTCAGTGCTATTGTAGCAGTTATCCTTGAAGCTTTTGGTGTATACTGTGAAGGTGAATTTAAATGGGGATGTGGGTATCTTTATATTGCGGTGGTTCTGAATTTTAGTCAGTCATGGGCTTTGTACTGTCTTGTTCAGTTTTACACTGTTACAAAAGATGAACTAGCTCGCATAAAACCGTTAGCCAAGTTTTTGACATTTAAATCAATTGTGTTTTTGACATGGTGGCAAGGTGTGGCAATTGCTCTTCTCTATGCCTTGGGTTTGTTCAAAAGCCCTATAGCTGAAGGCTTGCAGTTTAAGTCAAGTGTTCAAGACTTCATAATTTCTATAGAGATGGGCATTGCTTCTGTTGTTCACCTATATGTTTTTCCTGCCAAACCTTATGAGATGATGGGAGATCGCTTGCCTGGAACTGTCTCTGTTCTTGGAGACTATGTATCGGCTGACTGTCCTTTGGATCCGGAGGAGGTTAGGGACAGTGAACGCCCCACAAAGCTACGCCTCTCCACTCCTAACATTGATGCCAAGAGCGGCATGACCATCAGAGAGAGTGTTCGGGATGTTTTCATTGGTGGCGGGGGATATATTGTGCAAGATGTGAAGTTCACAGTAACACAGGCAGTGGAGCCGGTAGAGAAGGGGTTCACCAGGTTCAACGAGAAGCTACACAAGATCTCCCAAAACATTAAGAAACATGACAAGGAGAAACGAAAGGCGAAGGATGACAGTTGTATATCAGCATCACCTACACGGAAGGTGATTCGTGGGATAGACGACCCTCTCTTGAATGGAAGCATGAGTGACAGCGGGGTTGCAAGGGTAAAGAGGCCTCATCGCCGCAAATCTGGATATACTAGTGCAGAAAGCGGCGGAGAGAGCAGTAGTGATCAGAGTTATGGTGGGTTTCAGGTAAGAGGCCGTCGGTGGGTAACCAAAGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Solute_trans_a

Protein Analysis

496

Amino Acids

55.77

Weight (kDa)

8.55

Isoelectric Point (pI)

36.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Solute_trans_a PF03619 23 - 310 8.1e-88 Organic solute transporter Ostalpha
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011477)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38360
fragaria_vesca FvH4_2g16560 FvH4_2g16560
malus_domestica MD05G1133900.v1.1 MD10G1138900.v1.1
prunus_persica Prupe.8G177700_v2.0.a1
pyrus_communis pycom05g13070 pycom10g11810
rosa_chinensis RchiOBHm_Chr6g0280631
rosa_laevigata RLG00000013042
rosa_multiflora Rmu_sc0000976.1_g000001
rosa_roxburghii Rroxscaffold_7G00187860
rosa_rugosa Rorug06G0133000 Rorug06G0133100 Rorug06G0133200
rosa_samantha Rh6AG245600 Rh6BG248000 Rh6CG249400 Rh6DG240600
rosa_wichuraiana Rw6G021260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 324
AccB1I GGYRCC 1 cut(s) 324
AccBSI CCGCTC 1 cut(s) 1077
AccI GTMKAC 1 cut(s) 585
AccIII TCCGGA 1 cut(s) 1006
AciI CCGC 7 cut(s) 632, 1077, 1122, 1353, 1384, 1413, 1416
AclWI GGATC 2 cut(s) 998, 1011
AcoI YGGCCR 1 cut(s) 484
AcsI RAATTY 5 cut(s) 23, 365, 509, 599, 643
AcuI CTGAAG 1 cut(s) 849
AfaI GTAC 4 cut(s) 87, 326, 497, 668
AfiI CCNNNNNNNGG 1 cut(s) 1471
AgsI TTSAA 9 cut(s) 108, 250, 365, 469, 572, 814, 857, 1201, 1333
AhlI ACTAGT 1 cut(s) 1400
AjiI CACGTC 1 cut(s) 386
AjnI CCWGG 3 cut(s) 327, 952, 1193
AluBI AGCT 5 cut(s) 575, 710, 827, 1042, 1210
AluI AGCT 5 cut(s) 575, 710, 827, 1042, 1210
Alw21I GWGCWC 1 cut(s) 129
Alw26I GTCTC 3 cut(s) 546, 967, 969
AlwI GGATC 2 cut(s) 998, 1011
Aor13HI TCCGGA 1 cut(s) 1006
AoxI GGCC 3 cut(s) 484, 1373, 1462
ApoI RAATTY 5 cut(s) 23, 365, 509, 599, 643
Asp700I GAANNNNTTC 2 cut(s) 210, 1187
Asp718I GGTACC 1 cut(s) 324
AsuHPI GGTGA 5 cut(s) 608, 893, 1183, 1281, 1315
AxyI CCTNAGG 1 cut(s) 150
BalI TGGCCA 1 cut(s) 486
BamHI GGATCC 1 cut(s) 1003
BanI GGYRCC 1 cut(s) 324
Bbv12I GWGCWC 1 cut(s) 129
BccI CCATC 3 cut(s) 874, 931, 1094
BceAI ACGGC 1 cut(s) 1449
BciT130I CCWGG 3 cut(s) 329, 954, 1195
BclI TGATCA 1 cut(s) 1432
BcoDI GTCTC 3 cut(s) 546, 967, 969
BcuI ACTAGT 1 cut(s) 1400
BfaI CTAG 3 cut(s) 68, 707, 1401
BfmI CTRYAG 2 cut(s) 822, 873
BglII AGATCT 1 cut(s) 1218
BisI GCNGC 3 cut(s) 1078, 1384, 1414
BlsI GCNGC 3 cut(s) 1079, 1385, 1415
Bme1390I CCNGG 3 cut(s) 329, 954, 1195
BmgBI CACGTC 1 cut(s) 386
BmiI GGNNCC 4 cut(s) 189, 326, 1005, 1173
BmrFI CCNGG 3 cut(s) 329, 954, 1195
BmrI ACTGGG 1 cut(s) 28
BmsI GCATC 3 cut(s) 451, 1057, 1295
BmuI ACTGGG 1 cut(s) 28
BsaAI YACGTR 1 cut(s) 57
BsaJI CCNNGG 2 cut(s) 473, 801
BsaWI WCCGGW 1 cut(s) 1006
BsaXI ACNNNNNCTCC 6 cut(s) 146, 176, 966, 996, 1205, 1235
Bsc4I CCNNNNNNNGG 1 cut(s) 1471
Bse118I RCCGGY 1 cut(s) 1174
Bse1I ACTGG 1 cut(s) 34
Bse21I CCTNAGG 1 cut(s) 150
Bse3DI GCAATG 1 cut(s) 885
BseAI TCCGGA 1 cut(s) 1006
BseBI CCWGG 3 cut(s) 329, 954, 1195
BseDI CCNNGG 2 cut(s) 473, 801
BseGI GGATG 4 cut(s) 442, 617, 1111, 1273
BseLI CCNNNNNNNGG 1 cut(s) 1471
BseMI GCAATG 1 cut(s) 885
BseMII CTCAG 2 cut(s) 141, 559
BseNI ACTGG 1 cut(s) 34
BseRI GAGGAG 2 cut(s) 167, 1025
BsgI GTGCAG 1 cut(s) 1425
BshFI GGCC 3 cut(s) 486, 1375, 1464
BshNI GGYRCC 1 cut(s) 324
BsiHKAI GWGCWC 1 cut(s) 129
BsiSI CCGG 2 cut(s) 1007, 1175
BslFI GGGAC 1 cut(s) 1034
BslI CCNNNNNNNGG 1 cut(s) 1471
BsmAI GTCTC 3 cut(s) 546, 967, 969
BsmFI GGGAC 1 cut(s) 1034
BsnI GGCC 3 cut(s) 486, 1375, 1464
Bsp1286I GDGCHC 1 cut(s) 129
Bsp13I TCCGGA 1 cut(s) 1006
Bsp143I GATC 4 cut(s) 943, 1003, 1218, 1432
Bsp19I CCATGG 1 cut(s) 473
BspACI CCGC 7 cut(s) 632, 1077, 1122, 1353, 1384, 1413, 1416
BspANI GGCC 3 cut(s) 486, 1375, 1464
BspCNI CTCAG 2 cut(s) 142, 558
BspEI TCCGGA 1 cut(s) 1006
BspLI GGNNCC 4 cut(s) 189, 326, 1005, 1173
BspPI GGATC 2 cut(s) 998, 1011
BspQI GCTCTTC 1 cut(s) 795
BspT107I GGYRCC 1 cut(s) 324
BsrBI CCGCTC 1 cut(s) 1077
BsrDI GCAATG 1 cut(s) 885
BsrFI RCCGGY 1 cut(s) 1174
BsrI ACTGG 1 cut(s) 34
BssAI RCCGGY 1 cut(s) 1174
BssECI CCNNGG 2 cut(s) 473, 801
BssMI GATC 4 cut(s) 943, 1003, 1218, 1432
BssNAI GTATAC 1 cut(s) 586
BssT1I CCWWGG 2 cut(s) 473, 801
Bst1107I GTATAC 1 cut(s) 586
Bst2UI CCWGG 3 cut(s) 329, 954, 1195
Bst6I CTCTTC 2 cut(s) 345, 795
BstBAI YACGTR 1 cut(s) 57
BstC8I GCNNGC 4 cut(s) 337, 712, 836, 950
BstDEI CTNAG 3 cut(s) 150, 396, 545
BstDSI CCRYGG 1 cut(s) 473
BstEII GGTNACC 1 cut(s) 1474
BstF5I GGATG 4 cut(s) 442, 617, 1111, 1273
BstKTI GATC 4 cut(s) 946, 1006, 1221, 1435
BstMAI GTCTC 3 cut(s) 546, 967, 969
BstMBI GATC 4 cut(s) 943, 1003, 1218, 1432
BstMWI GCNNNNNNNGC 3 cut(s) 270, 557, 1422
BstNI CCWGG 3 cut(s) 329, 954, 1195
BstNSI RCATGY 1 cut(s) 339
BstPI GGTNACC 1 cut(s) 1474
BstSCI CCNGG 3 cut(s) 327, 952, 1193
BstSFI CTRYAG 2 cut(s) 822, 873
BstX2I RGATCY 2 cut(s) 1003, 1218
BstYI RGATCY 2 cut(s) 1003, 1218
BstZ17I GTATAC 1 cut(s) 586
Bsu36I CCTNAGG 1 cut(s) 150
BsuRI GGCC 3 cut(s) 486, 1375, 1464
BtgI CCRYGG 1 cut(s) 473
BtgZI GCGATG 1 cut(s) 1364
BtrI CACGTC 1 cut(s) 386
BtsCI GGATG 4 cut(s) 442, 617, 1111, 1273
BtsI GCAGTG 1 cut(s) 1173
BtsIMutI CAGTG 4 cut(s) 553, 687, 1030, 1173
Cac8I GCNNGC 4 cut(s) 337, 712, 836, 950
Cfr10I RCCGGY 1 cut(s) 1174
CsiI ACCWGGT 2 cut(s) 327, 1193
Csp6I GTAC 4 cut(s) 86, 325, 496, 667
CviQI GTAC 4 cut(s) 86, 325, 496, 667
DdeI CTNAG 3 cut(s) 150, 396, 545
DpnI GATC 4 cut(s) 945, 1005, 1220, 1434
DpnII GATC 4 cut(s) 943, 1003, 1218, 1432
DraI TTTAAA 2 cut(s) 604, 745
EaeI YGGCCR 1 cut(s) 484
Eam1104I CTCTTC 2 cut(s) 345, 795
EarI CTCTTC 2 cut(s) 345, 795
EciI GGCGGA 1 cut(s) 1431
Eco130I CCWWGG 2 cut(s) 473, 801
Eco147I AGGCCT 1 cut(s) 1375
Eco57I CTGAAG 1 cut(s) 849
Eco81I CCTNAGG 1 cut(s) 150
Eco91I GGTNACC 1 cut(s) 1474
EcoO65I GGTNACC 1 cut(s) 1474
EcoRI GAATTC 2 cut(s) 23, 365
EcoRII CCWGG 3 cut(s) 327, 952, 1193
EcoT14I CCWWGG 2 cut(s) 473, 801
ErhI CCWWGG 2 cut(s) 473, 801
FaqI GGGAC 1 cut(s) 1034
FauI CCCGC 2 cut(s) 1115, 1346
FbaI TGATCA 1 cut(s) 1432
FblI GTMKAC 1 cut(s) 585
Fnu4HI GCNGC 3 cut(s) 1078, 1384, 1414
FokI GGATG 4 cut(s) 429, 624, 1118, 1280
Fsp4HI GCNGC 3 cut(s) 1078, 1384, 1414
FspBI CTAG 3 cut(s) 68, 707, 1401
GluI GCNGC 3 cut(s) 1078, 1384, 1414
HaeIII GGCC 3 cut(s) 486, 1375, 1464
HapII CCGG 2 cut(s) 1007, 1175
HindIII AAGCTT 1 cut(s) 573
HinfI GANTC 5 cut(s) 206, 277, 296, 400, 1306
HpaII CCGG 2 cut(s) 1007, 1175
HphI GGTGA 5 cut(s) 608, 893, 1183, 1281, 1315
Hpy166II GTNNAC 5 cut(s) 586, 901, 1028, 1152, 1191
Hpy188I TCNGA 4 cut(s) 424, 642, 1091, 1437
Hpy188III TCNNGA 8 cut(s) 20, 149, 466, 857, 1007, 1103, 1330, 1392
Hpy8I GTNNAC 5 cut(s) 586, 901, 1028, 1152, 1191
Hpy99I CGWCG 1 cut(s) 1470
HpyAV CCTTC 8 cut(s) 264, 315, 374, 587, 824, 1177, 1258, 1294
HpyCH4IV ACGT 2 cut(s) 56, 385
HpyCH4V TGCA 8 cut(s) 137, 200, 335, 389, 838, 1138, 1361, 1406
HpyF10VI GCNNNNNNNGC 3 cut(s) 270, 557, 1422
HpyF3I CTNAG 3 cut(s) 150, 396, 545
HpySE526I ACGT 2 cut(s) 56, 385
Kpn2I TCCGGA 1 cut(s) 1006
KpnI GGTACC 1 cut(s) 328
Ksp22I TGATCA 1 cut(s) 1432
Kzo9I GATC 4 cut(s) 943, 1003, 1218, 1432
LguI GCTCTTC 1 cut(s) 795
LmnI GCTCC 2 cut(s) 154, 1171
LweI GCATC 3 cut(s) 451, 1057, 1295
MabI ACCWGGT 2 cut(s) 327, 1193
MaeI CTAG 3 cut(s) 68, 707, 1401
MaeII ACGT 2 cut(s) 56, 385
MaeIII GTNAC 4 cut(s) 691, 1156, 1346, 1474
MalI GATC 4 cut(s) 945, 1005, 1220, 1434
MbiI CCGCTC 1 cut(s) 1077
MboI GATC 4 cut(s) 943, 1003, 1218, 1432
MboII GAAGA 3 cut(s) 16, 362, 782
MfeI CAATTG 2 cut(s) 750, 783
MflI RGATCY 2 cut(s) 1003, 1218
MhlI GDGCHC 1 cut(s) 129
MlsI TGGCCA 1 cut(s) 486
MluNI TGGCCA 1 cut(s) 486
MlyI GAGTC 1 cut(s) 394
Mox20I TGGCCA 1 cut(s) 486
MroI TCCGGA 1 cut(s) 1006
MroXI GAANNNNTTC 2 cut(s) 210, 1187
MscI TGGCCA 1 cut(s) 486
MseI TTAA 8 cut(s) 167, 438, 533, 537, 603, 744, 843, 1233
MslI CAYNNNNRTG 1 cut(s) 906
Msp20I TGGCCA 1 cut(s) 486
MspA1I CMGCKG 1 cut(s) 1353
MspI CCGG 2 cut(s) 1007, 1175
MspR9I CCNGG 3 cut(s) 329, 954, 1195
MunI CAATTG 2 cut(s) 750, 783
MvaI CCWGG 3 cut(s) 329, 954, 1195
MwoI GCNNNNNNNGC 3 cut(s) 270, 557, 1422
NcoI CCATGG 1 cut(s) 473
NdeII GATC 4 cut(s) 943, 1003, 1218, 1432
NlaIV GGNNCC 4 cut(s) 189, 326, 1005, 1173
NmuCI GTSAC 1 cut(s) 1346
NspI RCATGY 1 cut(s) 339
PacI TTAATTAA 1 cut(s) 537
PaeI GCATGC 1 cut(s) 339
PceI AGGCCT 1 cut(s) 1375
PciSI GCTCTTC 1 cut(s) 795
PdmI GAANNNNTTC 2 cut(s) 210, 1187
PfeI GAWTC 4 cut(s) 206, 277, 296, 1306
PkrI GCNGC 3 cut(s) 1079, 1385, 1415
PleI GAGTC 1 cut(s) 394
PpsI GAGTC 1 cut(s) 394
Ppu21I YACGTR 1 cut(s) 57
Psp6I CCWGG 3 cut(s) 327, 952, 1193
PspEI GGTNACC 1 cut(s) 1474
PspGI CCWGG 3 cut(s) 327, 952, 1193
PspN4I GGNNCC 4 cut(s) 189, 326, 1005, 1173
PsuI RGATCY 2 cut(s) 1003, 1218
RsaI GTAC 4 cut(s) 87, 326, 497, 668
RsaNI GTAC 4 cut(s) 86, 325, 496, 667
RseI CAYNNNNRTG 1 cut(s) 906
SapI GCTCTTC 1 cut(s) 795
SaqAI TTAA 8 cut(s) 167, 438, 533, 537, 603, 744, 843, 1233
SatI GCNGC 3 cut(s) 1078, 1384, 1414
Sau3AI GATC 4 cut(s) 943, 1003, 1218, 1432
SchI GAGTC 1 cut(s) 394
ScrFI CCNGG 3 cut(s) 329, 954, 1195
SduI GDGCHC 1 cut(s) 129
SexAI ACCWGGT 2 cut(s) 327, 1193
SfaNI GCATC 3 cut(s) 451, 1057, 1295
SfcI CTRYAG 2 cut(s) 822, 873
SmiI ATTTAAAT 2 cut(s) 604, 745
SmiMI CAYNNNNRTG 1 cut(s) 906
SpeI ACTAGT 1 cut(s) 1400
SphI GCATGC 1 cut(s) 339
SseBI AGGCCT 1 cut(s) 1375
SsiI CCGC 7 cut(s) 632, 1077, 1122, 1353, 1384, 1413, 1416
SspMI CTAG 3 cut(s) 68, 707, 1401
StuI AGGCCT 1 cut(s) 1375
StyD4I CCNGG 3 cut(s) 327, 952, 1193
StyI CCWWGG 2 cut(s) 473, 801
SwaI ATTTAAAT 2 cut(s) 604, 745
TaiI ACGT 2 cut(s) 59, 388
TaqI TCGA 2 cut(s) 21, 257
TatI WGTACW 2 cut(s) 85, 666
TauI GCSGC 3 cut(s) 1080, 1386, 1416
TfiI GAWTC 4 cut(s) 206, 277, 296, 1306
Tru1I TTAA 8 cut(s) 167, 438, 533, 537, 603, 744, 843, 1233
Tru9I TTAA 8 cut(s) 167, 438, 533, 537, 603, 744, 843, 1233
TscAI CASTG 4 cut(s) 553, 694, 1030, 1173
TseFI GTSAC 1 cut(s) 1346
Tsp45I GTSAC 1 cut(s) 1346
TspDTI ATGAA 8 cut(s) 16, 17, 309, 358, 470, 717, 853, 1102
TspGWI ACGGA 2 cut(s) 180, 1312
TspRI CASTG 4 cut(s) 553, 694, 1030, 1173
XapI RAATTY 5 cut(s) 23, 365, 509, 599, 643
XceI RCATGY 1 cut(s) 339
XmiI GTMKAC 1 cut(s) 585
XmnI GAANNNNTTC 2 cut(s) 210, 1187
XspI CTAG 3 cut(s) 68, 707, 1401
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.