AT4G38510

V-type proton ATPase subunit

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Reverse (-)
18010812 .. 18015173
4362 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G38510.5

Sequence Viewer

Length: 1464 bp
ATGGGTGCTGCTGAAAACAACCTTGAAATGGAGGGTACCCTGGAGATCGGCATGGAGTATAGAACTGTTTCTGGTGTTGCGGGACCTCTCGTCATCCTTGAAAAAGTCAAGGGGCCTAAATACCAAGAAATTGTCAATATCCGTCTTGGGGATGGAACTACCCGACGTGGTCAAGTTCTCGAAGTTGATGGAGAGAAAGCTGTTGTTCAGGTATTTGAGGGAACATCTGGAATCGACAACAAGTACACAACTGTGCAATTTACAGGAGAGGTTTTGAAAACTCCTGTTTCTTTGGATATGCTTGGTCGCATCTTCAATGGTTCAGGGAAGCCCATTGACAACGGTCCACCTATATTGCCTGAGGCGTACTTGGATATTTCTGGAAGTTCTATCAATCCCAGTGAGAGAACCTATCCTGAAGAGATGATTCAGACGGGTATATCCACCATTGATGTCATGAACTCTATCGCCAGAGGACAGAAGATTCCCCTCTTTTCTGCCGCAGGTCTTCCCCACAATGAAATTGCTGCTCAGATTTGCCGTCAGGCTGGTTTGGTTAAGCGTTTAGAGAAGTCAGATAATCTTCTCGAGCATCAGGAGGATGATAACTTCGCCATTGTGTTCGCAGCAATGGGTGTGAACATGGAGACTGCACAATTTTTTAAACGTGATTTCGAGGAGAATGGATCGATGGAGAGAGTGACTCTTTTCCTTAACTTGGCAAACGACCCCACTATTGAGCGTATCATCACTCCTCGTATCGCACTTACAACTGCTGAGTACTTGGCATATGAATGTGGCAAGCATGTCCTTGTCATTCTCACAGACATGAGTTCCTACGCCGATGCTCTTCGTGAGGTCTCTGCTGCCCGTGAAGAAGTGCCTGGAAGGCGTGGTTACCCAGGTTACATGTACACCGACTTGGCTACCATATACGAGAGAGCAGGGCGAATTGAAGGGAGGAAAGGTTCCATCACTCAAATTCCCATTTTAACCATGCCAAACGATGATATCACGCATCCCACACCAGATCTGACAGGATACATTACAGAGGGGCAAATCTATATTGACCGACAACTTCACAATAGACAGATCTACCCTCCGATCAATGTCTTGCCATCTCTGTCTCGTCTCATGAAGAGTGCCATTGGTGAGGGTATGACTCGCAGGGACCACTCTGATGTTTCTAATCAATTGTATGCCAATTACGCTATTGGAAAGGACGTGCAGGCCATGAAAGCCGTGGTTGGAGAAGAAGCTCTTTCTTCCGAGGATCTGCTATATCTTGAGTTCTTGGATAAGTTCGAGAGGAAGTTTGTGGCTCAGGGAGCTTATGATACCCGAAACATCTTCCAGTCACTCGACCTGGCATGGACTCTCCTCAGAATCTTCCCCCGTGAGTTACTTCACCGTATACCCGCGAAAACCCTTGATCAGTTTTACAGTCGCGATACCACCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

487

Amino Acids

54.3

Weight (kDa)

5.03

Isoelectric Point (pI)

33.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP-synt_ab_N PF02874 30 - 96 1.7e-15 ATP synthase alpha/beta family, beta-barrel domain
ATP-synt_ab PF00006 153 - 383 1.1e-75 ATP synthase alpha/beta family, nucleotide-binding domain
ATP-synt_VA_C PF22919 389 - 488 4.7e-34 C-terminal domain of V and A type ATP synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 494
Acc65I GGTACC 1 cut(s) 35
AccB1I GGYRCC 1 cut(s) 35
AccI GTMKAC 1 cut(s) 1414
AccII CGCG 2 cut(s) 1421, 1449
AciI CCGC 3 cut(s) 80, 501, 1419
AclWI GGATC 2 cut(s) 694, 1281
AcsI RAATTY 1 cut(s) 981
AcuI CTGAAG 1 cut(s) 438
AfaI GTAC 5 cut(s) 37, 245, 368, 782, 914
AfiI CCNNNNNNNGG 3 cut(s) 28, 148, 718
AflIII ACRYGT 1 cut(s) 909
AgsI TTSAA 5 cut(s) 26, 101, 277, 316, 956
AhdI GACNNNNNGTC 1 cut(s) 89
AjiI CACGTC 2 cut(s) 167, 1225
AjnI CCWGG 4 cut(s) 39, 883, 901, 1365
AleI CACNNNNGTG 1 cut(s) 251
AloI GAACNNNNNNTCC 2 cut(s) 952, 984
AluBI AGCT 3 cut(s) 200, 1259, 1331
AluI AGCT 3 cut(s) 200, 1259, 1331
Alw26I GTCTC 4 cut(s) 641, 865, 1131, 1136
AlwI GGATC 2 cut(s) 694, 1281
Ama87I CYCGRG 1 cut(s) 587
AoxI GGCC 2 cut(s) 113, 1230
ApeKI GCWGC 4 cut(s) 8, 527, 626, 866
ApoI RAATTY 1 cut(s) 981
Asp700I GAANNNNTTC 1 cut(s) 67
Asp718I GGTACC 1 cut(s) 35
AspS9I GGNCC 4 cut(s) 83, 113, 344, 1171
AsuHPI GGTGA 2 cut(s) 1163, 1400
AvaI CYCGRG 1 cut(s) 587
AvaII GGWCC 3 cut(s) 83, 344, 1171
AxyI CCTNAGG 1 cut(s) 360
BanI GGYRCC 1 cut(s) 35
BbsI GAAGAC 1 cut(s) 500
BbvI GCAGC 3 cut(s) 514, 638, 853
BccI CCATC 5 cut(s) 146, 182, 685, 980, 1126
BceAI ACGGC 2 cut(s) 525, 1226
BciT130I CCWGG 4 cut(s) 41, 885, 903, 1367
BciVI GTATCC 1 cut(s) 1034
BclI TGATCA 1 cut(s) 1432
BcoDI GTCTC 4 cut(s) 641, 865, 1131, 1136
BfuAI ACCTGC 1 cut(s) 494
BfuI GTATCC 1 cut(s) 1034
BglI GCCNNNNNGGC 1 cut(s) 889
BglII AGATCT 2 cut(s) 1030, 1092
BisI GCNGC 5 cut(s) 9, 501, 528, 627, 867
BlsI GCNGC 5 cut(s) 10, 502, 529, 628, 868
BmcAI AGTACT 1 cut(s) 782
Bme1390I CCNGG 4 cut(s) 41, 885, 903, 1367
Bme18I GGWCC 3 cut(s) 83, 344, 1171
BmeRI GACNNNNNGTC 1 cut(s) 89
BmeT110I CYCGRG 1 cut(s) 587
BmgBI CACGTC 2 cut(s) 167, 1225
BmgT120I GGNCC 4 cut(s) 83, 113, 344, 1171
BmiI GGNNCC 5 cut(s) 37, 84, 114, 970, 1172
BmrFI CCNGG 4 cut(s) 41, 885, 903, 1367
BmrI ACTGGG 1 cut(s) 393
BmsI GCATC 4 cut(s) 318, 601, 835, 1027
BmuI ACTGGG 1 cut(s) 393
BoxI GACNNNNGTC 1 cut(s) 342
BpiI GAAGAC 1 cut(s) 500
BplI GAGNNNNNCTC 2 cut(s) 688, 720
BpmI CTGGAG 1 cut(s) 62
Bpu10I CCTNAGC 1 cut(s) 1323
BpuEI CTTGAG 1 cut(s) 1307
Bsa29I ATCGAT 1 cut(s) 689
BsaI GGTCTC 1 cut(s) 865
BsaJI CCNNGG 4 cut(s) 39, 901, 1242, 1269
BsaXI ACNNNNNCTCC 2 cut(s) 952, 982
Bsc4I CCNNNNNNNGG 3 cut(s) 28, 148, 718
Bse1I ACTGG 2 cut(s) 399, 1354
Bse21I CCTNAGG 1 cut(s) 360
Bse3DI GCAATG 1 cut(s) 636
BseBI CCWGG 4 cut(s) 41, 885, 903, 1367
BseCI ATCGAT 1 cut(s) 689
BseDI CCNNGG 4 cut(s) 39, 901, 1242, 1269
BseGI GGATG 4 cut(s) 93, 157, 607, 1018
BseLI CCNNNNNNNGG 3 cut(s) 28, 148, 718
BseMI GCAATG 1 cut(s) 636
BseMII CTCAG 5 cut(s) 351, 545, 768, 1337, 1396
BseNI ACTGG 2 cut(s) 399, 1354
BseRI GAGGAG 3 cut(s) 692, 744, 1370
BseXI GCAGC 3 cut(s) 514, 638, 853
BsgI GTGCAG 2 cut(s) 636, 1247
Bsh1236I CGCG 2 cut(s) 1421, 1449
BshFI GGCC 2 cut(s) 115, 1232
BshNI GGYRCC 1 cut(s) 35
BshVI ATCGAT 1 cut(s) 689
BsiHKCI CYCGRG 1 cut(s) 587
BslFI GGGAC 2 cut(s) 96, 1184
BslI CCNNNNNNNGG 3 cut(s) 28, 148, 718
BsmAI GTCTC 4 cut(s) 641, 865, 1131, 1136
BsmBI CGTCTC 1 cut(s) 1136
BsmFI GGGAC 2 cut(s) 96, 1184
BsnI GGCC 2 cut(s) 115, 1232
Bso31I GGTCTC 1 cut(s) 865
BsoBI CYCGRG 1 cut(s) 587
Bsp1407I TGTACA 1 cut(s) 912
Bsp143I GATC 7 cut(s) 45, 686, 1030, 1092, 1104, 1273, 1432
Bsp68I TCGCGA 1 cut(s) 1449
BspACI CCGC 3 cut(s) 80, 501, 1419
BspANI GGCC 2 cut(s) 115, 1232
BspCNI CTCAG 5 cut(s) 352, 544, 769, 1336, 1395
BspDI ATCGAT 1 cut(s) 689
BspFNI CGCG 2 cut(s) 1421, 1449
BspHI TCATGA 2 cut(s) 456, 1134
BspLI GGNNCC 5 cut(s) 37, 84, 114, 970, 1172
BspMI ACCTGC 1 cut(s) 494
BspPI GGATC 2 cut(s) 694, 1281
BspQI GCTCTTC 1 cut(s) 855
BspT107I GGYRCC 1 cut(s) 35
BspTNI GGTCTC 1 cut(s) 865
BsrDI GCAATG 1 cut(s) 636
BsrGI TGTACA 1 cut(s) 912
BsrI ACTGG 2 cut(s) 399, 1354
BssECI CCNNGG 4 cut(s) 39, 901, 1242, 1269
BssMI GATC 7 cut(s) 45, 686, 1030, 1092, 1104, 1273, 1432
BssNAI GTATAC 1 cut(s) 1415
Bst1107I GTATAC 1 cut(s) 1415
Bst2UI CCWGG 4 cut(s) 41, 885, 903, 1367
Bst4CI ACNGT 5 cut(s) 67, 253, 344, 1412, 1445
Bst6I CTCTTC 3 cut(s) 414, 855, 1133
BstAUI TGTACA 1 cut(s) 912
BstC8I GCNNGC 2 cut(s) 803, 1230
BstDEI CTNAG 5 cut(s) 360, 531, 777, 1323, 1382
BstDSI CCRYGG 1 cut(s) 1242
BstEII GGTNACC 1 cut(s) 896
BstF5I GGATG 4 cut(s) 93, 157, 607, 1018
BstFNI CGCG 2 cut(s) 1421, 1449
BstKTI GATC 7 cut(s) 48, 689, 1033, 1095, 1107, 1276, 1435
BstMAI GTCTC 4 cut(s) 641, 865, 1131, 1136
BstMBI GATC 7 cut(s) 45, 686, 1030, 1092, 1104, 1273, 1432
BstMWI GCNNNNNNNGC 4 cut(s) 889, 1208, 1238, 1328
BstNI CCWGG 4 cut(s) 41, 885, 903, 1367
BstNSI RCATGY 2 cut(s) 809, 913
BstPAI GACNNNNGTC 1 cut(s) 342
BstPI GGTNACC 1 cut(s) 896
BstSCI CCNGG 4 cut(s) 39, 883, 901, 1365
BstUI CGCG 2 cut(s) 1421, 1449
BstV1I GCAGC 3 cut(s) 514, 638, 853
BstV2I GAAGAC 1 cut(s) 500
BstX2I RGATCY 3 cut(s) 1030, 1092, 1273
BstYI RGATCY 3 cut(s) 1030, 1092, 1273
BstZ17I GTATAC 1 cut(s) 1415
Bsu15I ATCGAT 1 cut(s) 689
Bsu36I CCTNAGG 1 cut(s) 360
BsuI GTATCC 1 cut(s) 1034
BsuRI GGCC 2 cut(s) 115, 1232
BsuTUI ATCGAT 1 cut(s) 689
BtgI CCRYGG 1 cut(s) 1242
BtrI CACGTC 2 cut(s) 167, 1225
BtsCI GGATG 4 cut(s) 93, 157, 607, 1018
BtsIMutI CAGTG 1 cut(s) 406
BtuMI TCGCGA 1 cut(s) 1449
BveI ACCTGC 1 cut(s) 494
Cac8I GCNNGC 2 cut(s) 803, 1230
CciI TCATGA 2 cut(s) 456, 1134
Cfr13I GGNCC 4 cut(s) 83, 113, 344, 1171
ClaI ATCGAT 1 cut(s) 689
Csp6I GTAC 5 cut(s) 36, 244, 367, 781, 913
CspCI CAANNNNNGTGG 2 cut(s) 336, 371
CviQI GTAC 5 cut(s) 36, 244, 367, 781, 913
DdeI CTNAG 5 cut(s) 360, 531, 777, 1323, 1382
DpnI GATC 7 cut(s) 47, 688, 1032, 1094, 1106, 1275, 1434
DpnII GATC 7 cut(s) 45, 686, 1030, 1092, 1104, 1273, 1432
DraI TTTAAA 1 cut(s) 664
DriI GACNNNNNGTC 1 cut(s) 89
Eam1104I CTCTTC 3 cut(s) 414, 855, 1133
Eam1105I GACNNNNNGTC 1 cut(s) 89
EarI CTCTTC 3 cut(s) 414, 855, 1133
Eco31I GGTCTC 1 cut(s) 865
Eco32I GATATC 1 cut(s) 1012
Eco47I GGWCC 3 cut(s) 83, 344, 1171
Eco57I CTGAAG 1 cut(s) 438
Eco81I CCTNAGG 1 cut(s) 360
Eco88I CYCGRG 1 cut(s) 587
Eco91I GGTNACC 1 cut(s) 896
EcoO109I RGGNCCY 2 cut(s) 83, 113
EcoO65I GGTNACC 1 cut(s) 896
EcoRII CCWGG 4 cut(s) 39, 883, 901, 1365
EcoRV GATATC 1 cut(s) 1012
Esp3I CGTCTC 1 cut(s) 1136
FalI AAGNNNNNCTT 2 cut(s) 1245, 1277
FaqI GGGAC 2 cut(s) 96, 1184
FauI CCCGC 2 cut(s) 73, 1426
FauNDI CATATG 1 cut(s) 790
FbaI TGATCA 1 cut(s) 1432
FblI GTMKAC 1 cut(s) 1414
Fnu4HI GCNGC 5 cut(s) 9, 501, 528, 627, 867
FokI GGATG 4 cut(s) 80, 164, 614, 1005
Fsp4HI GCNGC 5 cut(s) 9, 501, 528, 627, 867
GluI GCNGC 5 cut(s) 9, 501, 528, 627, 867
GsuI CTGGAG 1 cut(s) 62
HaeIII GGCC 2 cut(s) 115, 1232
HinfI GANTC 7 cut(s) 231, 427, 484, 703, 1162, 1375, 1386
HphI GGTGA 2 cut(s) 1163, 1400
Hpy166II GTNNAC 5 cut(s) 246, 347, 640, 915, 1415
Hpy188I TCNGA 8 cut(s) 432, 534, 577, 1035, 1104, 1180, 1270, 1385
Hpy8I GTNNAC 5 cut(s) 246, 347, 640, 915, 1415
Hpy99I CGWCG 1 cut(s) 168
HpyAV CCTTC 2 cut(s) 882, 950
HpyCH4III ACNGT 5 cut(s) 67, 253, 344, 1412, 1445
HpyCH4IV ACGT 3 cut(s) 166, 667, 1224
HpyCH4V TGCA 3 cut(s) 256, 653, 1228
HpyF10VI GCNNNNNNNGC 4 cut(s) 889, 1208, 1238, 1328
HpyF3I CTNAG 5 cut(s) 360, 531, 777, 1323, 1382
HpySE526I ACGT 3 cut(s) 166, 667, 1224
KpnI GGTACC 1 cut(s) 39
Ksp22I TGATCA 1 cut(s) 1432
Kzo9I GATC 7 cut(s) 45, 686, 1030, 1092, 1104, 1273, 1432
LguI GCTCTTC 1 cut(s) 855
LmnI GCTCC 1 cut(s) 1328
Lsp1109I GCAGC 3 cut(s) 514, 638, 853
LweI GCATC 4 cut(s) 318, 601, 835, 1027
MaeII ACGT 3 cut(s) 166, 667, 1224
MaeIII GTNAC 5 cut(s) 700, 896, 905, 1356, 1401
MalI GATC 7 cut(s) 47, 688, 1032, 1094, 1106, 1275, 1434
MboI GATC 7 cut(s) 45, 686, 1030, 1092, 1104, 1273, 1432
MfeI CAATTG 1 cut(s) 1193
MflI RGATCY 3 cut(s) 1030, 1092, 1273
MluCI AATT 8 cut(s) 129, 257, 522, 656, 951, 981, 1193, 1204
MlyI GAGTC 3 cut(s) 697, 1156, 1369
MmeI TCCRAC 1 cut(s) 1228
MroXI GAANNNNTTC 1 cut(s) 67
MseI TTAA 4 cut(s) 558, 663, 714, 992
MslI CAYNNNNRTG 4 cut(s) 251, 793, 827, 1179
MspR9I CCNGG 4 cut(s) 41, 885, 903, 1367
MunI CAATTG 1 cut(s) 1193
MvaI CCWGG 4 cut(s) 41, 885, 903, 1367
MvnI CGCG 2 cut(s) 1421, 1449
MwoI GCNNNNNNNGC 4 cut(s) 889, 1208, 1238, 1328
NdeI CATATG 1 cut(s) 790
NdeII GATC 7 cut(s) 45, 686, 1030, 1092, 1104, 1273, 1432
NlaIV GGNNCC 5 cut(s) 37, 84, 114, 970, 1172
NmuCI GTSAC 2 cut(s) 700, 1356
NruI TCGCGA 1 cut(s) 1449
NspI RCATGY 2 cut(s) 809, 913
OliI CACNNNNGTG 1 cut(s) 251
PaeR7I CTCGAG 1 cut(s) 587
PagI TCATGA 2 cut(s) 456, 1134
PciI ACATGT 1 cut(s) 909
PciSI GCTCTTC 1 cut(s) 855
PdmI GAANNNNTTC 1 cut(s) 67
PfeI GAWTC 4 cut(s) 231, 427, 484, 1386
PflFI GACNNNGTC 1 cut(s) 168
PkrI GCNGC 5 cut(s) 10, 502, 529, 628, 868
PleI GAGTC 3 cut(s) 697, 1156, 1369
PpsI GAGTC 3 cut(s) 697, 1156, 1369
PpuMI RGGWCCY 1 cut(s) 83
PscI ACATGT 1 cut(s) 909
PshAI GACNNNNGTC 1 cut(s) 342
Psp5II RGGWCCY 1 cut(s) 83
Psp6I CCWGG 4 cut(s) 39, 883, 901, 1365
PspEI GGTNACC 1 cut(s) 896
PspGI CCWGG 4 cut(s) 39, 883, 901, 1365
PspN4I GGNNCC 5 cut(s) 37, 84, 114, 970, 1172
PspPI GGNCC 4 cut(s) 83, 113, 344, 1171
PspPPI RGGWCCY 1 cut(s) 83
PsuI RGATCY 3 cut(s) 1030, 1092, 1273
PsyI GACNNNGTC 1 cut(s) 168
RruI TCGCGA 1 cut(s) 1449
RsaI GTAC 5 cut(s) 37, 245, 368, 782, 914
RsaNI GTAC 5 cut(s) 36, 244, 367, 781, 913
RseI CAYNNNNRTG 4 cut(s) 251, 793, 827, 1179
SapI GCTCTTC 1 cut(s) 855
SaqAI TTAA 4 cut(s) 558, 663, 714, 992
SatI GCNGC 5 cut(s) 9, 501, 528, 627, 867
Sau3AI GATC 7 cut(s) 45, 686, 1030, 1092, 1104, 1273, 1432
Sau96I GGNCC 4 cut(s) 83, 113, 344, 1171
ScaI AGTACT 1 cut(s) 782
SchI GAGTC 3 cut(s) 697, 1156, 1369
ScrFI CCNGG 4 cut(s) 41, 885, 903, 1367
SfaNI GCATC 4 cut(s) 318, 601, 835, 1027
Sfr274I CTCGAG 1 cut(s) 587
SinI GGWCC 3 cut(s) 83, 344, 1171
SlaI CTCGAG 1 cut(s) 587
SmiMI CAYNNNNRTG 4 cut(s) 251, 793, 827, 1179
SmlI CTYRAG 2 cut(s) 587, 1286
SmoI CTYRAG 2 cut(s) 587, 1286
Sse9I AATT 8 cut(s) 129, 257, 522, 656, 951, 981, 1193, 1204
SsiI CCGC 3 cut(s) 80, 501, 1419
StyD4I CCNGG 4 cut(s) 39, 883, 901, 1365
TaaI ACNGT 5 cut(s) 67, 253, 344, 1412, 1445
TaiI ACGT 3 cut(s) 169, 670, 1227
TaqI TCGA 7 cut(s) 180, 234, 588, 675, 689, 1305, 1362
TaqII GACCGA 1 cut(s) 1086
TasI AATT 8 cut(s) 129, 257, 522, 656, 951, 981, 1193, 1204
TatI WGTACW 3 cut(s) 243, 780, 912
TauI GCSGC 1 cut(s) 503
TfiI GAWTC 4 cut(s) 231, 427, 484, 1386
Tru1I TTAA 4 cut(s) 558, 663, 714, 992
Tru9I TTAA 4 cut(s) 558, 663, 714, 992
TscAI CASTG 1 cut(s) 406
TseFI GTSAC 2 cut(s) 700, 1356
TseI GCWGC 4 cut(s) 8, 527, 626, 866
Tsp45I GTSAC 2 cut(s) 700, 1356
TspDTI ATGAA 5 cut(s) 473, 534, 807, 1151, 1250
TspGWI ACGGA 1 cut(s) 131
TspRI CASTG 1 cut(s) 406
Tth111I GACNNNGTC 1 cut(s) 168
VpaK11BI GGWCC 3 cut(s) 83, 344, 1171
XapI RAATTY 1 cut(s) 981
XceI RCATGY 2 cut(s) 809, 913
XcmI CCANNNNNNNNNTGG 1 cut(s) 1240
XhoI CTCGAG 1 cut(s) 587
XmiI GTMKAC 1 cut(s) 1414
XmnI GAANNNNTTC 1 cut(s) 67
ZrmI AGTACT 1 cut(s) 782
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.