RLG00000013192

V-type proton ATPase subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0007224
Physical Location & Seq
Reverse (-)
27438359 .. 27446245
7887 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013192

Sequence Viewer

Length: 1773 bp
ATGCCTCGTCCGGCGGTGCGTCCTTGGGACGTCGTTGTCAGACGGGCGACCTGGTTATGTGAGTCTGCTGGTGAGGGACAGTGGGTATCGGGTAGGAGCAGGAGTGTGGGAACGTCTGGGTTGCGGTCAGAAAGGATACGACAAGCGGGGGTCAGCCTCCGTGATCGTGTCCGATCTGAGCGACGGAGGATTCGAGCAAGGGTGCAGCGAAAAGGATCCAAGGGGATCTGGCCAGCGATGTTAGTTAGGGGTCAGGTTTCAGTGAGGCGGCGTAATCCGCTGGAGATTGAGCTTGCAAATATGGCTGTTTCACAAAACAATCACGATTTGGAGGAGGGAACGCTAGAGGTCGGCATGGAGTACAGAACTGTCTCTGGTGTGGCTGGACCTCTGGTTATCCTTGAAAAAGTTAAGGGACCCAAGTTTCAGGAGATTGTTAATATTCGGTTGGGAGATGGAACAATTCGACGTGGCCAAGTCCTGGAGGTTGATGGAGAGAAAGCTATTGTTCAGGTTTTTGAAGGAACATCTGGAATTGACAACAAGTATACCACAGTGCAGTTTACAGGAGAGGTGTTGAAAACTCCAGTCTCTCTGGACATGCTTGGGCGGATTTTTAATGGTTCTGGGAAACCCATTGACAATGGCCCCCCAATTTTGCCGGAGGCTTACCTAGACATATCTGGTAGTTCTATCAATCCCAGTGAGAGAACATATCCTGAAGAGATGATACAGACAGGAATTTCTACAATTGATGTTATGAATTCCATTGCCAGAGGACAAAAGATCCCACTTTTCTCTGCTGCTGGTCTACCTCATAATGAGATTGCAGCTCAGATATGTCGCCAGGCTGGTCTGGTCAAGCGGTTGGAGAAATCTGACAATCTTCTTGACGCTGGGGATGTGGAAGACGACAACTTCGCCATTGTGTTTGCTGCTATGGGAGTAAATATGGAGACCGCACAGTTCTTCAAACGTGATTTTGAGGAAAATGGTTCAATGGAGAGGGTCACCCTTTTTCTTAATCTGGCAAATGACCCTACAATTGAACGTATTATTACTCCTCGTATTGCTCTTACTACGGCAGAGTATTTGGCATATGAATGTGGGAAGCATGTCCTTGTCATACTGACAGATATGAGTTCTTATGCTGATGCTCTTCGTGAGGTATCTGCTGCCCGAGAGGAAGTGCCCGGAAGGCGTGGATATCCCGGGTACATGTATACTGATCTGGCACAAATCTATGAGCGTGCTGGAAGAATTGAAGGGCGAAAAGGCTCCATCACACAAATTCCAATTTTAACTATGCCCAATGATGATATTACACATCCCACCCCAGATCTTACGGGATATATCACTGAGGGACAGGTGTACATTGACAGGCAGCTCTACAACAGACAGGTATACCCACCAATCAATGTCCTTCCATCACTTTCTCGTTTGATGAAGAGTGCTATTGGTGAAGGGATGACTCGCAAGGATCATTCTGATGTATCCAATCAGTTGTATGCAAATTATGCAATTGGGAAGGATGTCCAAGCAATGAAAGCTGTGGTTGGAGAAGAAGCTCTTTCTTCTGAAGACTTGCTATACCTGGAGTTTTTGGACAAGTTTGAGAGGAAATTTGTGAGCCAAGGAGCTTATGATACTCGTAGTATCTTCCAGTCTCTTGATTTGGCATGGACATTGCTACGCATTTTCCCTCGTGAGCTTCTCCACCGTATACCTATAAAGACCCTAGATCTGTTCTACAGCAGAGATGCAACAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001678 GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0005911 GO:0006355 GO:0006357 GO:0006996 GO:0007010 GO:0007015 GO:0007154 GO:0007165 GO:0008064 GO:0008092 GO:0008150 GO:0009506 GO:0009507 GO:0009536 GO:0009743 GO:0009746 GO:0009749 GO:0009756 GO:0009757 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010182 GO:0010255 GO:0010468 GO:0010556 GO:0010639 GO:0012505 GO:0016020 GO:0016043 GO:0019219 GO:0019222 GO:0019725 GO:0022607 GO:0023052 GO:0030029 GO:0030036 GO:0030054 GO:0030832 GO:0030833 GO:0030834 GO:0030835 GO:0030837 GO:0031090 GO:0031323 GO:0031326 GO:0031333 GO:0032271 GO:0032272 GO:0032535 GO:0032956 GO:0032970 GO:0032991 GO:0033043 GO:0033500 GO:0034284 GO:0042221 GO:0042592 GO:0042593 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043242 GO:0043244 GO:0043254 GO:0044085 GO:0044087 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0046686 GO:0048519 GO:0048523 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051015 GO:0051017 GO:0051128 GO:0051129 GO:0051171 GO:0051252 GO:0051493 GO:0051494 GO:0051693 GO:0051716 GO:0055044 GO:0055082 GO:0060255 GO:0061572 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071322 GO:0071326 GO:0071331 GO:0071333 GO:0071840 GO:0071944 GO:0080090 GO:0090066 GO:0097435 GO:0098588 GO:0098805 GO:0110053 GO:1901700 GO:1901701 GO:1901879 GO:1901880 GO:1902903 GO:1902904 GO:1903506 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04145 ko04150 ko04721 ko04966 ko05110 ko05120 ko05323 map00190 map01100 map04145 map04150 map04721 map04966 map05110 map05120 map05323
Pfam Domains
Protein Families
ATP-synt_ab ATP-synt_ab_N

Protein Analysis

591

Amino Acids

65.96

Weight (kDa)

6.41

Isoelectric Point (pI)

39.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP-synt_ab_N PF02874 124 - 190 1.1e-14 ATP synthase alpha/beta family, beta-barrel domain
ATP-synt_ab PF00006 247 - 479 1.7e-74 ATP synthase alpha/beta family, nucleotide-binding domain
ATP-synt_VA_C PF22919 485 - 583 2.1e-33 C-terminal domain of V and A type ATP synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 35
AatII GACGTC 1 cut(s) 33
AccB7I CCANNNNNTGG 1 cut(s) 481
AccI GTMKAC 5 cut(s) 548, 811, 1223, 1404, 1723
AciI CCGC 8 cut(s) 14, 124, 146, 268, 278, 610, 865, 960
AclWI GGATC 5 cut(s) 210, 223, 233, 781, 1488
AcoI YGGCCR 2 cut(s) 230, 472
AcsI RAATTY 4 cut(s) 741, 763, 1290, 1622
AcuI CTGAAG 2 cut(s) 741, 1599
AcyI GRCGYC 1 cut(s) 30
AfaI GTAC 3 cut(s) 362, 1217, 1373
AfiI CCNNNNNNNGG 1 cut(s) 481
AflIII ACRYGT 1 cut(s) 1218
AgsI TTSAA 7 cut(s) 404, 521, 580, 973, 999, 1049, 1265
AjiI CACGTC 1 cut(s) 470
AjnI CCWGG 4 cut(s) 50, 480, 846, 1593
AluBI AGCT 8 cut(s) 292, 503, 833, 1387, 1550, 1568, 1640, 1711
AluI AGCT 8 cut(s) 292, 503, 833, 1387, 1550, 1568, 1640, 1711
Alw26I GTCTC 4 cut(s) 376, 595, 950, 1671
AlwI GGATC 5 cut(s) 210, 223, 233, 781, 1488
Ama87I CYCGRG 2 cut(s) 1179, 1211
AoxI GGCC 3 cut(s) 230, 472, 646
ApeKI GCWGC 6 cut(s) 205, 803, 830, 935, 1175, 1384
ApoI RAATTY 4 cut(s) 741, 763, 1290, 1622
ArsI GACNNNNNNTTYG 4 cut(s) 174, 206, 902, 934
AspS9I GGNCC 3 cut(s) 386, 416, 647
AsuC2I CCSGG 3 cut(s) 1194, 1212, 1213
AsuHPI GGTGA 3 cut(s) 83, 1003, 1472
AvaI CYCGRG 2 cut(s) 1179, 1211
AvaII GGWCC 2 cut(s) 386, 416
BaeGI GKGCMC 1 cut(s) 1194
BalI TGGCCA 2 cut(s) 232, 474
BamHI GGATCC 1 cut(s) 215
BarI GAAGNNNNNNTAC 2 cut(s) 714, 746
BauI CACGAG 1 cut(s) 1704
BbsI GAAGAC 2 cut(s) 915, 1587
BbvI GCAGC 6 cut(s) 217, 790, 842, 922, 1162, 1396
BccI CCATC 4 cut(s) 449, 485, 1289, 1435
BceAI ACGGC 1 cut(s) 1098
BciT130I CCWGG 4 cut(s) 52, 482, 848, 1595
BciVI GTATCC 2 cut(s) 129, 1504
BcnI CCSGG 3 cut(s) 1194, 1212, 1213
BcoDI GTCTC 4 cut(s) 376, 595, 950, 1671
BfaI CTAG 3 cut(s) 344, 674, 1739
BfmI CTRYAG 1 cut(s) 1750
BfuI GTATCC 2 cut(s) 129, 1504
BglI GCCNNNNNGGC 1 cut(s) 1198
BglII AGATCT 2 cut(s) 1339, 1741
BisI GCNGC 7 cut(s) 206, 269, 804, 831, 936, 1176, 1385
BlsI GCNGC 7 cut(s) 207, 270, 805, 832, 937, 1177, 1386
Bme1390I CCNGG 7 cut(s) 52, 482, 848, 1194, 1212, 1213, 1595
Bme18I GGWCC 2 cut(s) 386, 416
BmeT110I CYCGRG 2 cut(s) 1179, 1211
BmgBI CACGTC 1 cut(s) 470
BmgT120I GGNCC 3 cut(s) 386, 416, 647
BmiI GGNNCC 5 cut(s) 217, 417, 418, 649, 1279
BmrFI CCNGG 7 cut(s) 52, 482, 848, 1194, 1212, 1213, 1595
BmrI ACTGGG 1 cut(s) 696
BmsI GCATC 2 cut(s) 1144, 1750
BmuI ACTGGG 1 cut(s) 696
BpiI GAAGAC 2 cut(s) 915, 1587
BpmI CTGGAG 4 cut(s) 302, 503, 570, 1616
BpuMI CCSGG 3 cut(s) 1194, 1212, 1213
BsaHI GRCGYC 1 cut(s) 30
BsaI GGTCTC 1 cut(s) 950
BsaJI CCNNGG 4 cut(s) 23, 219, 1211, 1633
BsaXI ACNNNNNCTCC 2 cut(s) 88, 118
Bsc4I CCNNNNNNNGG 1 cut(s) 481
Bse1I ACTGG 3 cut(s) 587, 702, 1663
Bse3DI GCAATG 3 cut(s) 768, 1548, 1685
BseBI CCWGG 4 cut(s) 52, 482, 848, 1595
BseDI CCNNGG 4 cut(s) 23, 219, 1211, 1633
BseGI GGATG 4 cut(s) 907, 1327, 1473, 1537
BseLI CCNNNNNNNGG 1 cut(s) 481
BseMI GCAATG 3 cut(s) 768, 1548, 1685
BseMII CTCAG 3 cut(s) 168, 848, 1350
BseNI ACTGG 3 cut(s) 587, 702, 1663
BseRI GAGGAG 2 cut(s) 347, 1053
BseSI GKGCMC 1 cut(s) 1194
BseXI GCAGC 6 cut(s) 217, 790, 842, 922, 1162, 1396
BseYI CCCAGC 1 cut(s) 896
BsgI GTGCAG 2 cut(s) 224, 578
BshFI GGCC 3 cut(s) 232, 474, 648
BsiHKCI CYCGRG 2 cut(s) 1179, 1211
BsiSI CCGG 4 cut(s) 11, 662, 1194, 1212
BslFI GGGAC 4 cut(s) 41, 90, 429, 1377
BslI CCNNNNNNNGG 1 cut(s) 481
BsmAI GTCTC 4 cut(s) 376, 595, 950, 1671
BsmFI GGGAC 4 cut(s) 41, 90, 429, 1377
BsnI GGCC 3 cut(s) 232, 474, 648
Bso31I GGTCTC 1 cut(s) 950
BsoBI CYCGRG 2 cut(s) 1179, 1211
Bsp1286I GDGCHC 1 cut(s) 1194
Bsp1407I TGTACA 1 cut(s) 1371
Bsp143I GATC 9 cut(s) 163, 173, 215, 225, 786, 1228, 1339, 1480, 1741
BspACI CCGC 8 cut(s) 14, 124, 146, 268, 278, 610, 865, 960
BspANI GGCC 3 cut(s) 232, 474, 648
BspCNI CTCAG 3 cut(s) 169, 847, 1351
BspLI GGNNCC 5 cut(s) 217, 417, 418, 649, 1279
BspPI GGATC 5 cut(s) 210, 223, 233, 781, 1488
BspQI GCTCTTC 1 cut(s) 1164
BspTNI GGTCTC 1 cut(s) 950
BsrDI GCAATG 3 cut(s) 768, 1548, 1685
BsrGI TGTACA 1 cut(s) 1371
BsrI ACTGG 3 cut(s) 587, 702, 1663
BssECI CCNNGG 4 cut(s) 23, 219, 1211, 1633
BssMI GATC 9 cut(s) 163, 173, 215, 225, 786, 1228, 1339, 1480, 1741
BssNAI GTATAC 4 cut(s) 549, 1224, 1405, 1724
BssNI GRCGYC 1 cut(s) 30
BssSI CACGAG 1 cut(s) 1704
BssT1I CCWWGG 3 cut(s) 23, 219, 1633
Bst1107I GTATAC 4 cut(s) 549, 1224, 1405, 1724
Bst2BI CACGAG 1 cut(s) 1704
Bst2UI CCWGG 4 cut(s) 52, 482, 848, 1595
Bst4CI ACNGT 5 cut(s) 81, 370, 556, 966, 1721
Bst6I CTCTTC 3 cut(s) 717, 1164, 1442
BstACI GRCGYC 1 cut(s) 30
BstAPI GCANNNNNTGC 1 cut(s) 1517
BstAUI TGTACA 1 cut(s) 1371
BstC8I GCNNGC 3 cut(s) 234, 294, 1251
BstDEI CTNAG 3 cut(s) 177, 834, 1359
BstEII GGTNACC 1 cut(s) 1009
BstF5I GGATG 4 cut(s) 907, 1327, 1473, 1537
BstKTI GATC 9 cut(s) 166, 176, 218, 228, 789, 1231, 1342, 1483, 1744
BstMAI GTCTC 4 cut(s) 376, 595, 950, 1671
BstMBI GATC 9 cut(s) 163, 173, 215, 225, 786, 1228, 1339, 1480, 1741
BstMWI GCNNNNNNNGC 5 cut(s) 277, 302, 1198, 1517, 1547
BstNI CCWGG 4 cut(s) 52, 482, 848, 1595
BstNSI RCATGY 3 cut(s) 604, 1118, 1222
BstPI GGTNACC 1 cut(s) 1009
BstSCI CCNGG 7 cut(s) 50, 480, 846, 1192, 1210, 1211, 1593
BstSFI CTRYAG 1 cut(s) 1750
BstSLI GKGCMC 1 cut(s) 1194
BstV1I GCAGC 6 cut(s) 217, 790, 842, 922, 1162, 1396
BstV2I GAAGAC 2 cut(s) 915, 1587
BstX2I RGATCY 5 cut(s) 215, 225, 786, 1339, 1741
BstYI RGATCY 5 cut(s) 215, 225, 786, 1339, 1741
BstZ17I GTATAC 4 cut(s) 549, 1224, 1405, 1724
BsuI GTATCC 2 cut(s) 129, 1504
BsuRI GGCC 3 cut(s) 232, 474, 648
BtgZI GCGATG 1 cut(s) 251
BtrI CACGTC 1 cut(s) 470
BtsCI GGATG 4 cut(s) 907, 1327, 1473, 1537
BtsIMutI CAGTG 5 cut(s) 86, 267, 561, 709, 1356
Cac8I GCNNGC 3 cut(s) 234, 294, 1251
Cfr13I GGNCC 3 cut(s) 386, 416, 647
Cfr9I CCCGGG 1 cut(s) 1211
CseI GACGC 2 cut(s) 8, 902
CsiI ACCWGGT 1 cut(s) 50
Csp6I GTAC 3 cut(s) 361, 1216, 1372
CviAII CATG 5 cut(s) 355, 601, 1115, 1219, 1680
CviQI GTAC 3 cut(s) 361, 1216, 1372
DdeI CTNAG 3 cut(s) 177, 834, 1359
DpnI GATC 9 cut(s) 165, 175, 217, 227, 788, 1230, 1341, 1482, 1743
DpnII GATC 9 cut(s) 163, 173, 215, 225, 786, 1228, 1339, 1480, 1741
DrdI GACNNNNNNGTC 1 cut(s) 35
DseDI GACNNNNNNGTC 1 cut(s) 35
EaeI YGGCCR 2 cut(s) 230, 472
Eam1104I CTCTTC 3 cut(s) 717, 1164, 1442
EarI CTCTTC 3 cut(s) 717, 1164, 1442
EciI GGCGGA 1 cut(s) 625
Eco130I CCWWGG 3 cut(s) 23, 219, 1633
Eco31I GGTCTC 1 cut(s) 950
Eco32I GATATC 1 cut(s) 1208
Eco47I GGWCC 2 cut(s) 386, 416
Eco57I CTGAAG 2 cut(s) 741, 1599
Eco88I CYCGRG 2 cut(s) 1179, 1211
Eco91I GGTNACC 1 cut(s) 1009
EcoO109I RGGNCCY 1 cut(s) 416
EcoO65I GGTNACC 1 cut(s) 1009
EcoRI GAATTC 1 cut(s) 763
EcoRII CCWGG 4 cut(s) 50, 480, 846, 1593
EcoRV GATATC 1 cut(s) 1208
EcoT14I CCWWGG 3 cut(s) 23, 219, 1633
ErhI CCWWGG 3 cut(s) 23, 219, 1633
FaeI CATG 5 cut(s) 358, 604, 1118, 1222, 1683
FalI AAGNNNNNCTT 2 cut(s) 1554, 1586
FaqI GGGAC 4 cut(s) 41, 90, 429, 1377
FatI CATG 5 cut(s) 354, 600, 1114, 1218, 1679
FauI CCCGC 1 cut(s) 139
FauNDI CATATG 1 cut(s) 1099
FblI GTMKAC 5 cut(s) 548, 811, 1223, 1404, 1723
Fnu4HI GCNGC 7 cut(s) 206, 269, 804, 831, 936, 1176, 1385
FokI GGATG 4 cut(s) 914, 1314, 1480, 1544
Fsp4HI GCNGC 7 cut(s) 206, 269, 804, 831, 936, 1176, 1385
FspBI CTAG 3 cut(s) 344, 674, 1739
GluI GCNGC 7 cut(s) 206, 269, 804, 831, 936, 1176, 1385
GsaI CCCAGC 1 cut(s) 900
GsuI CTGGAG 4 cut(s) 302, 503, 570, 1616
HaeIII GGCC 3 cut(s) 232, 474, 648
HapII CCGG 4 cut(s) 11, 662, 1194, 1212
HgaI GACGC 2 cut(s) 8, 902
Hin1I GRCGYC 1 cut(s) 30
Hin1II CATG 5 cut(s) 358, 604, 1118, 1222, 1683
HinfI GANTC 3 cut(s) 62, 190, 1471
HpaII CCGG 4 cut(s) 11, 662, 1194, 1212
HphI GGTGA 3 cut(s) 83, 1003, 1472
Hpy166II GTNNAC 7 cut(s) 549, 564, 812, 1224, 1372, 1405, 1724
Hpy188I TCNGA 8 cut(s) 41, 130, 173, 178, 837, 880, 1489, 1579
Hpy188III TCNNGA 9 cut(s) 323, 428, 531, 596, 719, 890, 1163, 1670, 1706
Hpy8I GTNNAC 7 cut(s) 549, 564, 812, 1224, 1372, 1405, 1724
Hpy99I CGWCG 3 cut(s) 35, 186, 471
HpyAV CCTTC 6 cut(s) 515, 1191, 1259, 1433, 1457, 1522
HpyCH4III ACNGT 5 cut(s) 81, 370, 556, 966, 1721
HpyCH4IV ACGT 5 cut(s) 30, 113, 469, 976, 1051
HpyCH4V TGCA 7 cut(s) 205, 296, 559, 830, 1511, 1520, 1763
HpyF10VI GCNNNNNNNGC 5 cut(s) 277, 302, 1198, 1517, 1547
HpyF3I CTNAG 3 cut(s) 177, 834, 1359
HpySE526I ACGT 5 cut(s) 30, 113, 469, 976, 1051
Hsp92I GRCGYC 1 cut(s) 30
Hsp92II CATG 5 cut(s) 358, 604, 1118, 1222, 1683
KflI GGGWCCC 1 cut(s) 416
Kzo9I GATC 9 cut(s) 163, 173, 215, 225, 786, 1228, 1339, 1480, 1741
LguI GCTCTTC 1 cut(s) 1164
LmnI GCTCC 3 cut(s) 96, 1283, 1637
Lsp1109I GCAGC 6 cut(s) 217, 790, 842, 922, 1162, 1396
LweI GCATC 2 cut(s) 1144, 1750
MabI ACCWGGT 1 cut(s) 50
MaeI CTAG 3 cut(s) 344, 674, 1739
MaeII ACGT 5 cut(s) 30, 113, 469, 976, 1051
MaeIII GTNAC 1 cut(s) 1009
MalI GATC 9 cut(s) 165, 175, 217, 227, 788, 1230, 1341, 1482, 1743
MboI GATC 9 cut(s) 163, 173, 215, 225, 786, 1228, 1339, 1480, 1741
MfeI CAATTG 3 cut(s) 750, 1044, 1521
MflI RGATCY 5 cut(s) 215, 225, 786, 1339, 1741
MhlI GDGCHC 1 cut(s) 1194
MlsI TGGCCA 2 cut(s) 232, 474
MluNI TGGCCA 2 cut(s) 232, 474
MlyI GAGTC 2 cut(s) 71, 1465
MmeI TCCRAC 2 cut(s) 849, 1537
Mox20I TGGCCA 2 cut(s) 232, 474
MscI TGGCCA 2 cut(s) 232, 474
MseI TTAA 5 cut(s) 411, 438, 618, 1023, 1301
MslI CAYNNNNRTG 2 cut(s) 1102, 1488
Msp20I TGGCCA 2 cut(s) 232, 474
MspA1I CMGCKG 1 cut(s) 280
MspI CCGG 4 cut(s) 11, 662, 1194, 1212
MspR9I CCNGG 7 cut(s) 52, 482, 848, 1194, 1212, 1213, 1595
MunI CAATTG 3 cut(s) 750, 1044, 1521
MvaI CCWGG 4 cut(s) 52, 482, 848, 1595
MwoI GCNNNNNNNGC 5 cut(s) 277, 302, 1198, 1517, 1547
NciI CCSGG 3 cut(s) 1194, 1212, 1213
NdeI CATATG 1 cut(s) 1099
NdeII GATC 9 cut(s) 163, 173, 215, 225, 786, 1228, 1339, 1480, 1741
NlaIII CATG 5 cut(s) 358, 604, 1118, 1222, 1683
NlaIV GGNNCC 5 cut(s) 217, 417, 418, 649, 1279
NmuCI GTSAC 1 cut(s) 1009
NspI RCATGY 3 cut(s) 604, 1118, 1222
PciI ACATGT 1 cut(s) 1218
PciSI GCTCTTC 1 cut(s) 1164
PcsI WCGNNNNNNNCGW 1 cut(s) 190
PfeI GAWTC 1 cut(s) 190
PflMI CCANNNNNTGG 1 cut(s) 481
PfoI TCCNGGA 1 cut(s) 480
PkrI GCNGC 7 cut(s) 207, 270, 805, 832, 937, 1177, 1386
PleI GAGTC 2 cut(s) 70, 1465
PpsI GAGTC 2 cut(s) 70, 1465
PpuMI RGGWCCY 1 cut(s) 416
PscI ACATGT 1 cut(s) 1218
Psp5II RGGWCCY 1 cut(s) 416
Psp6I CCWGG 4 cut(s) 50, 480, 846, 1593
PspEI GGTNACC 1 cut(s) 1009
PspFI CCCAGC 1 cut(s) 896
PspGI CCWGG 4 cut(s) 50, 480, 846, 1593
PspN4I GGNNCC 5 cut(s) 217, 417, 418, 649, 1279
PspPI GGNCC 3 cut(s) 386, 416, 647
PspPPI RGGWCCY 1 cut(s) 416
PsuI RGATCY 5 cut(s) 215, 225, 786, 1339, 1741
RsaI GTAC 3 cut(s) 362, 1217, 1373
RsaNI GTAC 3 cut(s) 361, 1216, 1372
RseI CAYNNNNRTG 2 cut(s) 1102, 1488
SapI GCTCTTC 1 cut(s) 1164
SaqAI TTAA 5 cut(s) 411, 438, 618, 1023, 1301
SatI GCNGC 7 cut(s) 206, 269, 804, 831, 936, 1176, 1385
Sau3AI GATC 9 cut(s) 163, 173, 215, 225, 786, 1228, 1339, 1480, 1741
Sau96I GGNCC 3 cut(s) 386, 416, 647
SchI GAGTC 2 cut(s) 71, 1465
ScrFI CCNGG 7 cut(s) 52, 482, 848, 1194, 1212, 1213, 1595
SduI GDGCHC 1 cut(s) 1194
SexAI ACCWGGT 1 cut(s) 50
SfaNI GCATC 2 cut(s) 1144, 1750
SfcI CTRYAG 1 cut(s) 1750
SinI GGWCC 2 cut(s) 386, 416
SmaI CCCGGG 1 cut(s) 1213
SmiMI CAYNNNNRTG 2 cut(s) 1102, 1488
SsiI CCGC 8 cut(s) 14, 124, 146, 268, 278, 610, 865, 960
SspI AATATT 1 cut(s) 442
SspMI CTAG 3 cut(s) 344, 674, 1739
StyD4I CCNGG 7 cut(s) 50, 480, 846, 1192, 1210, 1211, 1593
StyI CCWWGG 3 cut(s) 23, 219, 1633
TaaI ACNGT 5 cut(s) 81, 370, 556, 966, 1721
TaiI ACGT 5 cut(s) 33, 116, 472, 979, 1054
TaqI TCGA 2 cut(s) 193, 466
TatI WGTACW 2 cut(s) 360, 1371
TauI GCSGC 1 cut(s) 271
TfiI GAWTC 1 cut(s) 190
Tru1I TTAA 5 cut(s) 411, 438, 618, 1023, 1301
Tru9I TTAA 5 cut(s) 411, 438, 618, 1023, 1301
TscAI CASTG 5 cut(s) 86, 267, 561, 709, 1363
TseFI GTSAC 1 cut(s) 1009
TseI GCWGC 6 cut(s) 205, 803, 830, 935, 1175, 1384
Tsp45I GTSAC 1 cut(s) 1009
TspDTI ATGAA 4 cut(s) 776, 1116, 1460, 1559
TspGWI ACGGA 2 cut(s) 149, 199
TspMI CCCGGG 1 cut(s) 1211
TspRI CASTG 5 cut(s) 86, 267, 561, 709, 1363
Van91I CCANNNNNTGG 1 cut(s) 481
VpaK11BI GGWCC 2 cut(s) 386, 416
XapI RAATTY 4 cut(s) 741, 763, 1290, 1622
XceI RCATGY 3 cut(s) 604, 1118, 1222
XmaI CCCGGG 1 cut(s) 1211
XmiI GTMKAC 5 cut(s) 548, 811, 1223, 1404, 1723
XspI CTAG 3 cut(s) 344, 674, 1739
ZraI GACGTC 1 cut(s) 31
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.