Rorug06G0119100

V-type proton ATPase subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0007224
Physical Location & Seq
Forward (+)
16290493 .. 16291431
939 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0119100.1

Sequence Viewer

Length: 516 bp
ATGGAGGGGAAATCGTACCAGAGGTTCCCTTGGGTGAAAATCCGTGAAATCAGGCACGATTACCTCAAGTTCAAGCTTTGCGACACCGACGGGAGCGTGGCCAACGGGCTCCGGCGCGTGATTGAAATCAACTCCTCCGTCCTCAAAGACGAGCTCGTCGCCCACCGCCTCGGCCTCATCCCCTTGACCAGCGATCGCGCCATGAGCATGCGCTTCTCACGTGACTGCGACGCCTGCGACTGTGACGGCCAGTGCGAGTACTACTCCGTCGAGTTTCACCTCCGCGCTCGCTGCCACTCCGACCAAACCCTAGATGTCACCAGCAAGGAACTCCTCAGCTCCAACCACACCGTCGTCCTGTCAATTTCTCTGACGCCTCCGAACAGAGGTGTAATGAACATGACTATGTATAGTCTGATAATTGAGAGGCTTAGACCCCTTGTGGGTTTGAAAGGCTGGGATTTTTGTGTTCTCTGGAAGTTGAGTGAAGACCAAAGATTAGTGGGAACTGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001678 GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0005911 GO:0006355 GO:0006357 GO:0006996 GO:0007010 GO:0007015 GO:0007154 GO:0007165 GO:0008064 GO:0008092 GO:0008150 GO:0009506 GO:0009507 GO:0009536 GO:0009743 GO:0009746 GO:0009749 GO:0009756 GO:0009757 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010182 GO:0010255 GO:0010468 GO:0010556 GO:0010639 GO:0012505 GO:0016020 GO:0016043 GO:0019219 GO:0019222 GO:0019725 GO:0022607 GO:0023052 GO:0030029 GO:0030036 GO:0030054 GO:0030832 GO:0030833 GO:0030834 GO:0030835 GO:0030837 GO:0031090 GO:0031323 GO:0031326 GO:0031333 GO:0032271 GO:0032272 GO:0032535 GO:0032956 GO:0032970 GO:0032991 GO:0033043 GO:0033500 GO:0034284 GO:0042221 GO:0042592 GO:0042593 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043242 GO:0043244 GO:0043254 GO:0044085 GO:0044087 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0046686 GO:0048519 GO:0048523 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051015 GO:0051017 GO:0051128 GO:0051129 GO:0051171 GO:0051252 GO:0051493 GO:0051494 GO:0051693 GO:0051716 GO:0055044 GO:0055082 GO:0060255 GO:0061572 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071322 GO:0071326 GO:0071331 GO:0071333 GO:0071840 GO:0071944 GO:0080090 GO:0090066 GO:0097435 GO:0098588 GO:0098805 GO:0110053 GO:1901700 GO:1901701 GO:1901879 GO:1901880 GO:1902903 GO:1902904 GO:1903506 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04145 ko04150 ko04721 ko04966 ko05110 ko05120 ko05323 map00190 map01100 map04145 map04150 map04721 map04966 map05110 map05120 map05323
Pfam Domains
Protein Families
ATP-synt_ab ATP-synt_ab_N

Protein Analysis

171

Amino Acids

19.66

Weight (kDa)

7.61

Isoelectric Point (pI)

36.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RNA_pol_A_bac PF01000 41 - 120 6.3e-08 RNA polymerase Rpb3/RpoA insert domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 155
AccII CGCG 3 cut(s) 117, 198, 285
AciI CCGC 2 cut(s) 166, 283
AcoI YGGCCR 2 cut(s) 99, 247
AcvI CACGTG 1 cut(s) 221
AcyI GRCGYC 2 cut(s) 231, 374
AfaI GTAC 2 cut(s) 17, 260
AfiI CCNNNNNNNGG 2 cut(s) 386, 443
AgsI TTSAA 3 cut(s) 73, 125, 451
AluBI AGCT 3 cut(s) 76, 154, 339
AluI AGCT 3 cut(s) 76, 154, 339
Alw21I GWGCWC 1 cut(s) 156
AoxI GGCC 3 cut(s) 99, 172, 247
ApeKI GCWGC 1 cut(s) 291
AsiSI GCGATCGC 1 cut(s) 196
AspLEI GCGC 4 cut(s) 117, 200, 213, 287
AsuHPI GGTGA 3 cut(s) 46, 269, 310
BalI TGGCCA 1 cut(s) 101
BanII GRGCYC 2 cut(s) 111, 156
BbrPI CACGTG 1 cut(s) 221
BbsI GAAGAC 1 cut(s) 495
Bbv12I GWGCWC 1 cut(s) 156
BbvCI CCTCAGC 1 cut(s) 335
BbvI GCAGC 1 cut(s) 278
BceAI ACGGC 1 cut(s) 262
BfaI CTAG 1 cut(s) 311
BisI GCNGC 1 cut(s) 292
BlsI GCNGC 1 cut(s) 293
BmcAI AGTACT 1 cut(s) 260
BmiI GGNNCC 2 cut(s) 26, 110
BpiI GAAGAC 1 cut(s) 495
BplI GAGNNNNNCTC 2 cut(s) 248, 280
Bpu10I CCTNAGC 1 cut(s) 335
BpuEI CTTGAG 1 cut(s) 50
BsaAI YACGTR 1 cut(s) 221
BsaBI GATNNNNATC 1 cut(s) 125
BsaHI GRCGYC 2 cut(s) 231, 374
BsaJI CCNNGG 2 cut(s) 29, 169
Bsc4I CCNNNNNNNGG 2 cut(s) 386, 443
Bse1I ACTGG 1 cut(s) 250
Bse8I GATNNNNATC 1 cut(s) 125
BseDI CCNNGG 2 cut(s) 29, 169
BseGI GGATG 1 cut(s) 177
BseJI GATNNNNATC 1 cut(s) 125
BseLI CCNNNNNNNGG 2 cut(s) 386, 443
BseMII CTCAG 1 cut(s) 349
BseNI ACTGG 1 cut(s) 250
BseRI GAGGAG 2 cut(s) 124, 323
BseXI GCAGC 1 cut(s) 278
BseYI CCCAGC 1 cut(s) 456
Bsh1236I CGCG 3 cut(s) 117, 198, 285
Bsh1285I CGRYCG 1 cut(s) 196
BshFI GGCC 3 cut(s) 101, 174, 249
BsiEI CGRYCG 1 cut(s) 196
BsiHKAI GWGCWC 1 cut(s) 156
BsiSI CCGG 1 cut(s) 112
BslI CCNNNNNNNGG 2 cut(s) 386, 443
BsnI GGCC 3 cut(s) 101, 174, 249
Bsp1286I GDGCHC 2 cut(s) 111, 156
Bsp143I GATC 1 cut(s) 193
BspACI CCGC 2 cut(s) 166, 283
BspANI GGCC 3 cut(s) 101, 174, 249
BspCNI CTCAG 1 cut(s) 348
BspFNI CGCG 3 cut(s) 117, 198, 285
BspLI GGNNCC 2 cut(s) 26, 110
BsrI ACTGG 1 cut(s) 250
BssECI CCNNGG 2 cut(s) 29, 169
BssMI GATC 1 cut(s) 193
BssNI GRCGYC 2 cut(s) 231, 374
BssT1I CCWWGG 1 cut(s) 29
Bst4CI ACNGT 3 cut(s) 242, 352, 511
BstACI GRCGYC 2 cut(s) 231, 374
BstBAI YACGTR 1 cut(s) 221
BstC8I GCNNGC 3 cut(s) 209, 235, 289
BstDEI CTNAG 2 cut(s) 335, 431
BstF5I GGATG 1 cut(s) 177
BstFNI CGCG 3 cut(s) 117, 198, 285
BstHHI GCGC 4 cut(s) 117, 200, 213, 287
BstKTI GATC 1 cut(s) 196
BstMBI GATC 1 cut(s) 193
BstMCI CGRYCG 1 cut(s) 196
BstMWI GCNNNNNNNGC 3 cut(s) 204, 234, 291
BstNSI RCATGY 1 cut(s) 211
BstUI CGCG 3 cut(s) 117, 198, 285
BstV1I GCAGC 1 cut(s) 278
BstV2I GAAGAC 1 cut(s) 495
BsuRI GGCC 3 cut(s) 101, 174, 249
BtsCI GGATG 1 cut(s) 177
BtsIMutI CAGTG 1 cut(s) 257
Cac8I GCNNGC 3 cut(s) 209, 235, 289
CfoI GCGC 4 cut(s) 117, 200, 213, 287
CseI GACGC 2 cut(s) 239, 382
Csp6I GTAC 2 cut(s) 16, 259
CviAII CATG 3 cut(s) 202, 208, 400
CviJI RGCY 9 cut(s) 76, 101, 109, 154, 174, 249, 339, 430, 456
CviKI_1 RGCY 9 cut(s) 76, 101, 109, 154, 174, 249, 339, 430, 456
CviQI GTAC 2 cut(s) 16, 259
DdeI CTNAG 2 cut(s) 335, 431
DpnI GATC 1 cut(s) 195
DpnII GATC 1 cut(s) 193
DrdI GACNNNNNNGTC 1 cut(s) 155
DseDI GACNNNNNNGTC 1 cut(s) 155
EaeI YGGCCR 2 cut(s) 99, 247
Ecl136II GAGCTC 1 cut(s) 154
Eco130I CCWWGG 1 cut(s) 29
Eco24I GRGCYC 2 cut(s) 111, 156
Eco53kI GAGCTC 1 cut(s) 154
Eco72I CACGTG 1 cut(s) 221
EcoICRI GAGCTC 1 cut(s) 154
EcoT14I CCWWGG 1 cut(s) 29
EcoT38I GRGCYC 2 cut(s) 111, 156
ErhI CCWWGG 1 cut(s) 29
FaeI CATG 3 cut(s) 205, 211, 403
FaiI YATR 6 cut(s) 203, 209, 401, 407, 411, 514
FatI CATG 3 cut(s) 201, 207, 399
Fnu4HI GCNGC 1 cut(s) 292
FokI GGATG 1 cut(s) 164
FriOI GRGCYC 2 cut(s) 111, 156
Fsp4HI GCNGC 1 cut(s) 292
FspBI CTAG 1 cut(s) 311
GlaI GCGC 4 cut(s) 116, 199, 212, 286
GluI GCNGC 1 cut(s) 292
GsaI CCCAGC 1 cut(s) 460
HaeIII GGCC 3 cut(s) 101, 174, 249
HapII CCGG 1 cut(s) 112
HgaI GACGC 2 cut(s) 239, 382
HhaI GCGC 4 cut(s) 117, 200, 213, 287
Hin1I GRCGYC 2 cut(s) 231, 374
Hin1II CATG 3 cut(s) 205, 211, 403
Hin6I GCGC 4 cut(s) 115, 198, 211, 285
HinP1I GCGC 4 cut(s) 115, 198, 211, 285
HindIII AAGCTT 1 cut(s) 74
HpaII CCGG 1 cut(s) 112
HphI GGTGA 3 cut(s) 46, 269, 310
Hpy188I TCNGA 4 cut(s) 301, 372, 381, 417
Hpy188III TCNNGA 1 cut(s) 475
Hpy99I CGWCG 5 cut(s) 92, 161, 233, 272, 356
HpyCH4III ACNGT 3 cut(s) 242, 352, 511
HpyCH4IV ACGT 1 cut(s) 220
HpyF10VI GCNNNNNNNGC 3 cut(s) 204, 234, 291
HpyF3I CTNAG 2 cut(s) 335, 431
HpySE526I ACGT 1 cut(s) 220
Hsp92I GRCGYC 2 cut(s) 231, 374
Hsp92II CATG 3 cut(s) 205, 211, 403
HspAI GCGC 4 cut(s) 115, 198, 211, 285
Kzo9I GATC 1 cut(s) 193
LmnI GCTCC 3 cut(s) 93, 114, 344
Lsp1109I GCAGC 1 cut(s) 278
MaeI CTAG 1 cut(s) 311
MaeII ACGT 1 cut(s) 220
MaeIII GTNAC 3 cut(s) 221, 242, 316
MalI GATC 1 cut(s) 195
MboI GATC 1 cut(s) 193
MboII GAAGA 1 cut(s) 500
MhlI GDGCHC 2 cut(s) 111, 156
MlsI TGGCCA 1 cut(s) 101
MluCI AATT 2 cut(s) 363, 420
MluNI TGGCCA 1 cut(s) 101
MmeI TCCRAC 2 cut(s) 324, 366
Mox20I TGGCCA 1 cut(s) 101
MscI TGGCCA 1 cut(s) 101
MslI CAYNNNNRTG 2 cut(s) 206, 404
Msp20I TGGCCA 1 cut(s) 101
MspI CCGG 1 cut(s) 112
MvnI CGCG 3 cut(s) 117, 198, 285
MwoI GCNNNNNNNGC 3 cut(s) 204, 234, 291
NdeII GATC 1 cut(s) 193
NlaIII CATG 3 cut(s) 205, 211, 403
NlaIV GGNNCC 2 cut(s) 26, 110
NmeAIII GCCGAG 1 cut(s) 150
NmuCI GTSAC 3 cut(s) 221, 242, 316
NspI RCATGY 1 cut(s) 211
PaeI GCATGC 1 cut(s) 211
PcsI WCGNNNNNNNCGW 1 cut(s) 252
PkrI GCNGC 1 cut(s) 293
Ple19I CGATCG 1 cut(s) 196
PmaCI CACGTG 1 cut(s) 221
PmlI CACGTG 1 cut(s) 221
Ppu21I YACGTR 1 cut(s) 221
Psp124BI GAGCTC 1 cut(s) 156
PspCI CACGTG 1 cut(s) 221
PspFI CCCAGC 1 cut(s) 456
PspN4I GGNNCC 2 cut(s) 26, 110
PsrI GAACNNNNNNTAC 2 cut(s) 8, 40
PvuI CGATCG 1 cut(s) 196
RgaI GCGATCGC 1 cut(s) 196
RsaI GTAC 2 cut(s) 17, 260
RsaNI GTAC 2 cut(s) 16, 259
RseI CAYNNNNRTG 2 cut(s) 206, 404
SacI GAGCTC 1 cut(s) 156
SatI GCNGC 1 cut(s) 292
Sau3AI GATC 1 cut(s) 193
ScaI AGTACT 1 cut(s) 260
SduI GDGCHC 2 cut(s) 111, 156
SetI ASST 8 cut(s) 26, 66, 78, 156, 223, 282, 341, 391
SfaAI GCGATCGC 1 cut(s) 196
SgfI GCGATCGC 1 cut(s) 196
SmiMI CAYNNNNRTG 2 cut(s) 206, 404
SmlI CTYRAG 1 cut(s) 65
SmoI CTYRAG 1 cut(s) 65
SphI GCATGC 1 cut(s) 211
Sse9I AATT 2 cut(s) 363, 420
SsiI CCGC 2 cut(s) 166, 283
SspMI CTAG 1 cut(s) 311
SstI GAGCTC 1 cut(s) 156
StyI CCWWGG 1 cut(s) 29
TaaI ACNGT 3 cut(s) 242, 352, 511
TaiI ACGT 1 cut(s) 223
TaqI TCGA 1 cut(s) 270
TasI AATT 2 cut(s) 363, 420
TatI WGTACW 1 cut(s) 258
TscAI CASTG 1 cut(s) 257
TseFI GTSAC 3 cut(s) 221, 242, 316
TseI GCWGC 1 cut(s) 291
Tsp45I GTSAC 3 cut(s) 221, 242, 316
TspDTI ATGAA 1 cut(s) 410
TspGWI ACGGA 3 cut(s) 32, 127, 256
TspRI CASTG 1 cut(s) 257
XceI RCATGY 1 cut(s) 211
XspI CTAG 1 cut(s) 311
ZrmI AGTACT 1 cut(s) 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.