Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0007224

Physical Location & Seq

Genomic Coordinates Forward (+)

16291487 .. 16292317

Gene Structure 831 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0119200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGGTTGGTTTTAGATTCATTGAGTGGATTGGTTGCTGTTGTTATGGGATTGGTGAGGACACCCATAATGGTGGACAAGAACTTCTGTTTCCAGTTTATCAAGTCTTTCAGTGCAGGGATGCAATGCAGCTCTCAAGAACTAATTCTTTTGATATCCTTGGTCATCTTCCTTCCTCAATGCCCTTAGACTCTGGGTCTCCGAGGACCAGCATGTCATTGATTTCATCACAGCACAATGCAACATTTGGTGCGAGCAAGACACCCTGGTGCAAGCAACACATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001678 GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0005911 GO:0006355 GO:0006357 GO:0006996 GO:0007010 GO:0007015 GO:0007154 GO:0007165 GO:0008064 GO:0008092 GO:0008150 GO:0009506 GO:0009507 GO:0009536 GO:0009743 GO:0009746 GO:0009749 GO:0009756 GO:0009757 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010182 GO:0010255 GO:0010468 GO:0010556 GO:0010639 GO:0012505 GO:0016020 GO:0016043 GO:0019219 GO:0019222 GO:0019725 GO:0022607 GO:0023052 GO:0030029 GO:0030036 GO:0030054 GO:0030832 GO:0030833 GO:0030834 GO:0030835 GO:0030837 GO:0031090 GO:0031323 GO:0031326 GO:0031333 GO:0032271 GO:0032272 GO:0032535 GO:0032956 GO:0032970 GO:0032991 GO:0033043 GO:0033500 GO:0034284 GO:0042221 GO:0042592 GO:0042593 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043242 GO:0043244 GO:0043254 GO:0044085 GO:0044087 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0046686 GO:0048519 GO:0048523 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051015 GO:0051017 GO:0051128 GO:0051129 GO:0051171 GO:0051252 GO:0051493 GO:0051494 GO:0051693 GO:0051716 GO:0055044 GO:0055082 GO:0060255 GO:0061572 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071322 GO:0071326 GO:0071331 GO:0071333 GO:0071840 GO:0071944 GO:0080090 GO:0090066 GO:0097435 GO:0098588 GO:0098805 GO:0110053 GO:1901700 GO:1901701 GO:1901879 GO:1901880 GO:1902903 GO:1902904 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04145 ko04150 ko04721 ko04966 ko05110 ko05120 ko05323 map00190 map01100 map04145 map04150 map04721 map04966 map05110 map05120 map05323

Pfam Domains

Protein Families

ATP-synt_ab ATP-synt_ab_N

Protein Analysis

94

Amino Acids

10.49

Weight (kDa)

6.37

Isoelectric Point (pI)

49.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007224)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20260 AT1G76030 AT4G38510 AT4G38510 AT4G38510 AT4G38510 AT4G38510
fragaria_vesca	FvH4_2g15620
malus_domestica	MD05G1124700.v1.1 MD10G1127400.v1.1
prunus_persica	Prupe.8G168500_v2.0.a1 Prupe.8G168500_v2.0.a1 Prupe.8G168500_v2.0.a1
pyrus_communis	pycom05g11870 pycom10g10920
rosa_chinensis	RchiOBHm_Chr6g0278821
rosa_laevigata	RLG00000013192
rosa_multiflora	Rmu_sc0004380.1_g000005
rosa_roxburghii	Rroxscaffold_7G00189620
rosa_rugosa	Rorug06G0119100 Rorug06G0119200 Rorug06G0119300
rosa_samantha	Rh6AG227800 Rh6CG235900
rosa_wichuraiana	Rw6G019990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	211
AflIII	ACRYGT	1 cut(s)	279
AhdI	GACNNNNNGTC	1 cut(s)	193
AjnI	CCWGG	1 cut(s)	263
AleI	CACNNNNGTG	1 cut(s)	265
AluBI	AGCT	1 cut(s)	130
AluI	AGCT	1 cut(s)	130
Alw26I	GTCTC	1 cut(s)	201
ApeKI	GCWGC	1 cut(s)	127
Asp700I	GAANNNNTTC	1 cut(s)	142
AspS9I	GGNCC	1 cut(s)	204
AsuHPI	GGTGA	1 cut(s)	65
AvaII	GGWCC	1 cut(s)	204
BbvI	GCAGC	1 cut(s)	139
BciT130I	CCWGG	1 cut(s)	265
BcoDI	GTCTC	1 cut(s)	201
BisI	GCNGC	1 cut(s)	128
BlsI	GCNGC	1 cut(s)	129
Bme1390I	CCNGG	1 cut(s)	265
Bme18I	GGWCC	1 cut(s)	204
BmeRI	GACNNNNNGTC	1 cut(s)	193
BmgT120I	GGNCC	1 cut(s)	204
BmrFI	CCNGG	1 cut(s)	265
BmsI	GCATC	1 cut(s)	109
BpuEI	CTTGAG	1 cut(s)	118
BsaI	GGTCTC	1 cut(s)	201
BsaJI	CCNNGG	3 cut(s)	157, 200, 263
Bse1I	ACTGG	1 cut(s)	92
Bse3DI	GCAATG	1 cut(s)	129
BseBI	CCWGG	1 cut(s)	265
BseDI	CCNNGG	3 cut(s)	157, 200, 263
BseGI	GGATG	1 cut(s)	124
BseMI	GCAATG	1 cut(s)	129
BseNI	ACTGG	1 cut(s)	92
BseXI	GCAGC	1 cut(s)	139
BsgI	GTGCAG	1 cut(s)	133
BsmAI	GTCTC	1 cut(s)	201
Bso31I	GGTCTC	1 cut(s)	201
BspTNI	GGTCTC	1 cut(s)	201
BsrDI	GCAATG	1 cut(s)	129
BsrI	ACTGG	1 cut(s)	92
BssECI	CCNNGG	3 cut(s)	157, 200, 263
BssT1I	CCWWGG	1 cut(s)	157
Bst2UI	CCWGG	1 cut(s)	265
BstC8I	GCNNGC	2 cut(s)	253, 272
BstDEI	CTNAG	1 cut(s)	184
BstF5I	GGATG	1 cut(s)	124
BstMAI	GTCTC	1 cut(s)	201
BstNI	CCWGG	1 cut(s)	265
BstNSI	RCATGY	2 cut(s)	214, 283
BstSCI	CCNGG	1 cut(s)	263
BstV1I	GCAGC	1 cut(s)	139
BstXI	CCANNNNNNTGG	1 cut(s)	71
BtsCI	GGATG	1 cut(s)	124
BtsIMutI	CAGTG	1 cut(s)	116
Cac8I	GCNNGC	2 cut(s)	253, 272
Cfr13I	GGNCC	1 cut(s)	204
CviAII	CATG	2 cut(s)	211, 280
CviJI	RGCY	1 cut(s)	130
CviKI_1	RGCY	1 cut(s)	130
DdeI	CTNAG	1 cut(s)	184
DrdI	GACNNNNNNGTC	1 cut(s)	211
DriI	GACNNNNNGTC	1 cut(s)	193
DseDI	GACNNNNNNGTC	1 cut(s)	211
Eam1105I	GACNNNNNGTC	1 cut(s)	193
Eco130I	CCWWGG	1 cut(s)	157
Eco31I	GGTCTC	1 cut(s)	201
Eco32I	GATATC	1 cut(s)	154
Eco47I	GGWCC	1 cut(s)	204
EcoRII	CCWGG	1 cut(s)	263
EcoRV	GATATC	1 cut(s)	154
EcoT14I	CCWWGG	1 cut(s)	157
ErhI	CCWWGG	1 cut(s)	157
FaeI	CATG	2 cut(s)	214, 283
FaiI	YATR	4 cut(s)	45, 66, 212, 281
FatI	CATG	2 cut(s)	210, 279
Fnu4HI	GCNGC	1 cut(s)	128
FokI	GGATG	1 cut(s)	131
Fsp4HI	GCNGC	1 cut(s)	128
GluI	GCNGC	1 cut(s)	128
Hin1II	CATG	2 cut(s)	214, 283
HinfI	GANTC	2 cut(s)	15, 188
HphI	GGTGA	1 cut(s)	65
Hpy166II	GTNNAC	1 cut(s)	74
Hpy188I	TCNGA	1 cut(s)	201
Hpy188III	TCNNGA	1 cut(s)	135
Hpy8I	GTNNAC	1 cut(s)	74
HpyAV	CCTTC	1 cut(s)	180
HpyCH4V	TGCA	5 cut(s)	114, 122, 127, 239, 270
HpyF3I	CTNAG	1 cut(s)	184
Hsp92II	CATG	2 cut(s)	214, 283
LpnPI	CCDG	6 cut(s)	100, 105, 177, 220, 250, 277
Lsp1109I	GCAGC	1 cut(s)	139
LweI	GCATC	1 cut(s)	109
MboII	GAAGA	1 cut(s)	158
MluCI	AATT	1 cut(s)	142
MlyI	GAGTC	1 cut(s)	182
MnlI	CCTC	3 cut(s)	49, 184, 195
MroXI	GAANNNNTTC	1 cut(s)	142
MslI	CAYNNNNRTG	2 cut(s)	69, 265
MspR9I	CCNGG	1 cut(s)	265
MvaI	CCWGG	1 cut(s)	265
NlaIII	CATG	2 cut(s)	214, 283
NspI	RCATGY	2 cut(s)	214, 283
OliI	CACNNNNGTG	1 cut(s)	265
PciI	ACATGT	1 cut(s)	279
PdmI	GAANNNNTTC	1 cut(s)	142
PfeI	GAWTC	1 cut(s)	15
PkrI	GCNGC	1 cut(s)	129
PleI	GAGTC	1 cut(s)	182
PpsI	GAGTC	1 cut(s)	182
PscI	ACATGT	1 cut(s)	279
Psp6I	CCWGG	1 cut(s)	263
PspGI	CCWGG	1 cut(s)	263
PspPI	GGNCC	1 cut(s)	204
RseI	CAYNNNNRTG	2 cut(s)	69, 265
SatI	GCNGC	1 cut(s)	128
Sau96I	GGNCC	1 cut(s)	204
SchI	GAGTC	1 cut(s)	182
ScrFI	CCNGG	1 cut(s)	265
SetI	ASST	1 cut(s)	132
SfaNI	GCATC	1 cut(s)	109
SinI	GGWCC	1 cut(s)	204
SmiMI	CAYNNNNRTG	2 cut(s)	69, 265
SmlI	CTYRAG	1 cut(s)	133
SmoI	CTYRAG	1 cut(s)	133
Sse9I	AATT	1 cut(s)	142
StyD4I	CCNGG	1 cut(s)	263
StyI	CCWWGG	1 cut(s)	157
TasI	AATT	1 cut(s)	142
TfiI	GAWTC	1 cut(s)	15
TscAI	CASTG	1 cut(s)	116
TseI	GCWGC	1 cut(s)	127
TspDTI	ATGAA	2 cut(s)	7, 213
TspRI	CASTG	1 cut(s)	116
VpaK11BI	GGWCC	1 cut(s)	204
XceI	RCATGY	2 cut(s)	214, 283
XmnI	GAANNNNTTC	1 cut(s)	142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.