Rh6AG227800

V-type proton ATPase subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0007224
Physical Location & Seq
Forward (+)
41138943 .. 41145033
6091 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG227800.1

Sequence Viewer

Length: 1182 bp
ATGGCTGTTTCACAAAACAATCACGATTTGGAGGAGGGAACGCTAGAGGTCGGCATGGAGTACAGAACTGTCTCTGGTGTGGCTGGACCTCTGGTTATCCTTGAAAAAGTTAAGGGACCCAAGTTTCAGGAGATTGTTAATATTCGGTTGGGAGATGGAACAATTCGACGTGGCCAAGTCCTGGAGGTTGATGGAGAGAAAGCTATTGTTCAGGTTTTCGAAGGAACATCTGGAATTGACAACAAGTATACCACAGTGCAGTTTACAGGAGAGGTGTTGAAAACTCCAGTCTCTCTGGACATGCTTGGGCGGATTTTTAATGGTTCTGGGAAACCCATTGACAATGGCCCCCCAATTTTGCCTGAGGCTTACCTAGACATATCTGGTAGTTCTATCAATCCCAGTGAGAGAACGTATCCTGAAGAGATGATACAGACAGGAATTTCTACAATTGATGTTATGAATTCCATTGCCAGAGGACAAAAGATCCCACTTTTCTCTGCTGCTGGTCTACCTCATAATGAGATTGCAGCTCAGATATGTCGCCAGGCTGGTCTGGTCAAGCGGTTGGAGAAATCTGACAATCTTCTTGACGATGGGGATGTGGAAGACGACAACTTCGCCATTGTGTTTGCTGCTATGGGAGTAAATATGGAGACCGCACAGTTCTTCAAACGTGATTTTGAGGAAAATGGTTCAATGGAGAGGGTCACCCTTTTTCTTAATCTGGCAAATGACCCTACAATTGAACGTATTATTACTCCTCGTATTGCTCTTACTACGGCAGAGTATTTGGCATATGAATGTGGGAAGCATGTCCTTGTCATACTGACAGATATGAGTTCTTATGCTGATGCTCTTCGTGAGGTATCTGCTGCTCGAGAGGAAGTGCCCGGAAGGCGTGGATATCCTGGGTACATGTATACTGATCTGGCACAAATCTATGAGCGTGCTGGAAGAATAGAAGGGCGAAAAGGCTCCATCACACAAATTCCAATTTTAACTATGCCCAATGATGATATTACACATCCCACCCCAGATCTTACGGGATATATCACTGAGGGACAGGTGTACATTGACAGGCAGCTATACAACAGACAGGTATACCCACCAATCAATGTCCTTCCATCACTTTCTCGTTTGATGAAGGTAAGGATACTTTTGATTTTTATTAAACTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001678 GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0005911 GO:0006355 GO:0006357 GO:0006996 GO:0007010 GO:0007015 GO:0007154 GO:0007165 GO:0008064 GO:0008092 GO:0008150 GO:0009506 GO:0009507 GO:0009536 GO:0009743 GO:0009746 GO:0009749 GO:0009756 GO:0009757 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010182 GO:0010255 GO:0010468 GO:0010556 GO:0010639 GO:0012505 GO:0016020 GO:0016043 GO:0019219 GO:0019222 GO:0019725 GO:0022607 GO:0023052 GO:0030029 GO:0030036 GO:0030054 GO:0030832 GO:0030833 GO:0030834 GO:0030835 GO:0030837 GO:0031090 GO:0031323 GO:0031326 GO:0031333 GO:0032271 GO:0032272 GO:0032535 GO:0032956 GO:0032970 GO:0032991 GO:0033043 GO:0033500 GO:0034284 GO:0042221 GO:0042592 GO:0042593 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043242 GO:0043244 GO:0043254 GO:0044085 GO:0044087 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0046686 GO:0048519 GO:0048523 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051015 GO:0051017 GO:0051128 GO:0051129 GO:0051171 GO:0051252 GO:0051493 GO:0051494 GO:0051693 GO:0051716 GO:0055044 GO:0055082 GO:0060255 GO:0061572 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071322 GO:0071326 GO:0071331 GO:0071333 GO:0071840 GO:0071944 GO:0080090 GO:0090066 GO:0097435 GO:0098588 GO:0098805 GO:0110053 GO:1901700 GO:1901701 GO:1901879 GO:1901880 GO:1902903 GO:1902904 GO:1903506 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04145 ko04150 ko04721 ko04966 ko05110 ko05120 ko05323 map00190 map01100 map04145 map04150 map04721 map04966 map05110 map05120 map05323
Pfam Domains
Protein Families
ATP-synt_ab ATP-synt_ab_N

Protein Analysis

393

Amino Acids

43.53

Weight (kDa)

4.92

Isoelectric Point (pI)

30.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP-synt_ab_N PF02874 24 - 90 6e-15 ATP synthase alpha/beta family, beta-barrel domain
ATP-synt_ab PF00006 147 - 379 6.3e-75 ATP synthase alpha/beta family, nucleotide-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 181
AccI GTMKAC 4 cut(s) 248, 511, 923, 1104
AciI CCGC 3 cut(s) 310, 565, 660
AclWI GGATC 1 cut(s) 481
AcoI YGGCCR 1 cut(s) 172
AcsI RAATTY 3 cut(s) 441, 463, 990
AcuI CTGAAG 1 cut(s) 441
AfaI GTAC 3 cut(s) 62, 917, 1073
AfiI CCNNNNNNNGG 1 cut(s) 181
AflIII ACRYGT 1 cut(s) 918
AgsI TTSAA 5 cut(s) 104, 280, 673, 699, 749
AjiI CACGTC 1 cut(s) 170
AjnI CCWGG 3 cut(s) 180, 546, 910
AluBI AGCT 3 cut(s) 203, 533, 1087
AluI AGCT 3 cut(s) 203, 533, 1087
Alw26I GTCTC 3 cut(s) 76, 295, 650
AlwI GGATC 1 cut(s) 481
Ama87I CYCGRG 1 cut(s) 879
AoxI GGCC 2 cut(s) 172, 346
ApeKI GCWGC 5 cut(s) 503, 530, 635, 875, 1084
ApoI RAATTY 3 cut(s) 441, 463, 990
ArsI GACNNNNNNTTYG 2 cut(s) 602, 634
AspS9I GGNCC 3 cut(s) 86, 116, 347
AsuC2I CCSGG 1 cut(s) 894
AsuHPI GGTGA 1 cut(s) 703
AsuII TTCGAA 1 cut(s) 219
AvaI CYCGRG 1 cut(s) 879
AvaII GGWCC 2 cut(s) 86, 116
AxyI CCTNAGG 1 cut(s) 363
BaeGI GKGCMC 1 cut(s) 894
BalI TGGCCA 1 cut(s) 174
BarI GAAGNNNNNNTAC 2 cut(s) 414, 446
BbsI GAAGAC 1 cut(s) 615
BbvI GCAGC 5 cut(s) 490, 542, 622, 862, 1096
BccI CCATC 5 cut(s) 149, 185, 590, 989, 1135
BceAI ACGGC 1 cut(s) 798
BciT130I CCWGG 3 cut(s) 182, 548, 912
BciVI GTATCC 2 cut(s) 426, 1149
BcnI CCSGG 1 cut(s) 894
BcoDI GTCTC 3 cut(s) 76, 295, 650
BfaI CTAG 2 cut(s) 44, 374
BfuI GTATCC 2 cut(s) 426, 1149
BglI GCCNNNNNGGC 1 cut(s) 898
BglII AGATCT 1 cut(s) 1039
BisI GCNGC 5 cut(s) 504, 531, 636, 876, 1085
BlsI GCNGC 5 cut(s) 505, 532, 637, 877, 1086
Bme1390I CCNGG 4 cut(s) 182, 548, 894, 912
Bme18I GGWCC 2 cut(s) 86, 116
BmeT110I CYCGRG 1 cut(s) 879
BmgBI CACGTC 1 cut(s) 170
BmgT120I GGNCC 3 cut(s) 86, 116, 347
BmiI GGNNCC 4 cut(s) 117, 118, 349, 979
BmrFI CCNGG 4 cut(s) 182, 548, 894, 912
BmrI ACTGGG 1 cut(s) 396
BmsI GCATC 1 cut(s) 844
BmuI ACTGGG 1 cut(s) 396
BpiI GAAGAC 1 cut(s) 615
BpmI CTGGAG 2 cut(s) 203, 270
Bpu14I TTCGAA 1 cut(s) 219
BpuMI CCSGG 1 cut(s) 894
BsaI GGTCTC 1 cut(s) 650
BsaJI CCNNGG 1 cut(s) 911
Bsc4I CCNNNNNNNGG 1 cut(s) 181
Bse1I ACTGG 2 cut(s) 287, 402
Bse21I CCTNAGG 1 cut(s) 363
Bse3DI GCAATG 1 cut(s) 468
BseBI CCWGG 3 cut(s) 182, 548, 912
BseDI CCNNGG 1 cut(s) 911
BseGI GGATG 2 cut(s) 607, 1027
BseLI CCNNNNNNNGG 1 cut(s) 181
BseMI GCAATG 1 cut(s) 468
BseMII CTCAG 3 cut(s) 354, 548, 1050
BseNI ACTGG 2 cut(s) 287, 402
BseRI GAGGAG 2 cut(s) 47, 753
BseSI GKGCMC 1 cut(s) 894
BseXI GCAGC 5 cut(s) 490, 542, 622, 862, 1096
BsgI GTGCAG 1 cut(s) 278
BshFI GGCC 2 cut(s) 174, 348
BsiHKCI CYCGRG 1 cut(s) 879
BsiSI CCGG 1 cut(s) 894
BslFI GGGAC 2 cut(s) 129, 1077
BslI CCNNNNNNNGG 1 cut(s) 181
BsmAI GTCTC 3 cut(s) 76, 295, 650
BsmFI GGGAC 2 cut(s) 129, 1077
BsnI GGCC 2 cut(s) 174, 348
Bso31I GGTCTC 1 cut(s) 650
BsoBI CYCGRG 1 cut(s) 879
Bsp119I TTCGAA 1 cut(s) 219
Bsp1286I GDGCHC 1 cut(s) 894
Bsp1407I TGTACA 1 cut(s) 1071
Bsp143I GATC 3 cut(s) 486, 928, 1039
BspACI CCGC 3 cut(s) 310, 565, 660
BspANI GGCC 2 cut(s) 174, 348
BspCNI CTCAG 3 cut(s) 355, 547, 1051
BspLI GGNNCC 4 cut(s) 117, 118, 349, 979
BspPI GGATC 1 cut(s) 481
BspQI GCTCTTC 1 cut(s) 864
BspT104I TTCGAA 1 cut(s) 219
BspTNI GGTCTC 1 cut(s) 650
BsrDI GCAATG 1 cut(s) 468
BsrGI TGTACA 1 cut(s) 1071
BsrI ACTGG 2 cut(s) 287, 402
BssECI CCNNGG 1 cut(s) 911
BssMI GATC 3 cut(s) 486, 928, 1039
BssNAI GTATAC 3 cut(s) 249, 924, 1105
Bst1107I GTATAC 3 cut(s) 249, 924, 1105
Bst2UI CCWGG 3 cut(s) 182, 548, 912
Bst4CI ACNGT 3 cut(s) 70, 256, 666
Bst6I CTCTTC 2 cut(s) 417, 864
BstAUI TGTACA 1 cut(s) 1071
BstBI TTCGAA 1 cut(s) 219
BstC8I GCNNGC 1 cut(s) 951
BstDEI CTNAG 3 cut(s) 363, 534, 1059
BstEII GGTNACC 1 cut(s) 709
BstF5I GGATG 2 cut(s) 607, 1027
BstKTI GATC 3 cut(s) 489, 931, 1042
BstMAI GTCTC 3 cut(s) 76, 295, 650
BstMBI GATC 3 cut(s) 486, 928, 1039
BstMWI GCNNNNNNNGC 1 cut(s) 898
BstNI CCWGG 3 cut(s) 182, 548, 912
BstNSI RCATGY 3 cut(s) 304, 818, 922
BstPI GGTNACC 1 cut(s) 709
BstSCI CCNGG 4 cut(s) 180, 546, 892, 910
BstSLI GKGCMC 1 cut(s) 894
BstV1I GCAGC 5 cut(s) 490, 542, 622, 862, 1096
BstV2I GAAGAC 1 cut(s) 615
BstX2I RGATCY 2 cut(s) 486, 1039
BstYI RGATCY 2 cut(s) 486, 1039
BstZ17I GTATAC 3 cut(s) 249, 924, 1105
Bsu36I CCTNAGG 1 cut(s) 363
BsuI GTATCC 2 cut(s) 426, 1149
BsuRI GGCC 2 cut(s) 174, 348
BtrI CACGTC 1 cut(s) 170
BtsCI GGATG 2 cut(s) 607, 1027
BtsIMutI CAGTG 3 cut(s) 261, 409, 1056
Cac8I GCNNGC 1 cut(s) 951
Cfr13I GGNCC 3 cut(s) 86, 116, 347
Csp6I GTAC 3 cut(s) 61, 916, 1072
CviAII CATG 4 cut(s) 55, 301, 815, 919
CviQI GTAC 3 cut(s) 61, 916, 1072
DdeI CTNAG 3 cut(s) 363, 534, 1059
DpnI GATC 3 cut(s) 488, 930, 1041
DpnII GATC 3 cut(s) 486, 928, 1039
EaeI YGGCCR 1 cut(s) 172
Eam1104I CTCTTC 2 cut(s) 417, 864
EarI CTCTTC 2 cut(s) 417, 864
EciI GGCGGA 1 cut(s) 325
Eco31I GGTCTC 1 cut(s) 650
Eco32I GATATC 1 cut(s) 908
Eco47I GGWCC 2 cut(s) 86, 116
Eco57I CTGAAG 1 cut(s) 441
Eco81I CCTNAGG 1 cut(s) 363
Eco88I CYCGRG 1 cut(s) 879
Eco91I GGTNACC 1 cut(s) 709
EcoO109I RGGNCCY 1 cut(s) 116
EcoO65I GGTNACC 1 cut(s) 709
EcoRI GAATTC 1 cut(s) 463
EcoRII CCWGG 3 cut(s) 180, 546, 910
EcoRV GATATC 1 cut(s) 908
FaeI CATG 4 cut(s) 58, 304, 818, 922
FaqI GGGAC 2 cut(s) 129, 1077
FatI CATG 4 cut(s) 54, 300, 814, 918
FauNDI CATATG 1 cut(s) 799
FblI GTMKAC 4 cut(s) 248, 511, 923, 1104
Fnu4HI GCNGC 5 cut(s) 504, 531, 636, 876, 1085
FokI GGATG 2 cut(s) 614, 1014
Fsp4HI GCNGC 5 cut(s) 504, 531, 636, 876, 1085
FspBI CTAG 2 cut(s) 44, 374
GluI GCNGC 5 cut(s) 504, 531, 636, 876, 1085
GsuI CTGGAG 2 cut(s) 203, 270
HaeIII GGCC 2 cut(s) 174, 348
HapII CCGG 1 cut(s) 894
Hin1II CATG 4 cut(s) 58, 304, 818, 922
HpaII CCGG 1 cut(s) 894
HphI GGTGA 1 cut(s) 703
Hpy166II GTNNAC 6 cut(s) 249, 264, 512, 924, 1072, 1105
Hpy188I TCNGA 2 cut(s) 537, 580
Hpy188III TCNNGA 8 cut(s) 23, 128, 231, 296, 419, 590, 863, 881
Hpy8I GTNNAC 6 cut(s) 249, 264, 512, 924, 1072, 1105
Hpy99I CGWCG 1 cut(s) 171
HpyAV CCTTC 5 cut(s) 215, 891, 959, 1133, 1141
HpyCH4III ACNGT 3 cut(s) 70, 256, 666
HpyCH4IV ACGT 4 cut(s) 169, 413, 676, 751
HpyCH4V TGCA 2 cut(s) 259, 530
HpyF10VI GCNNNNNNNGC 1 cut(s) 898
HpyF3I CTNAG 3 cut(s) 363, 534, 1059
HpySE526I ACGT 4 cut(s) 169, 413, 676, 751
Hsp92II CATG 4 cut(s) 58, 304, 818, 922
KflI GGGWCCC 1 cut(s) 116
Kzo9I GATC 3 cut(s) 486, 928, 1039
LguI GCTCTTC 1 cut(s) 864
LmnI GCTCC 1 cut(s) 983
Lsp1109I GCAGC 5 cut(s) 490, 542, 622, 862, 1096
LweI GCATC 1 cut(s) 844
MaeI CTAG 2 cut(s) 44, 374
MaeII ACGT 4 cut(s) 169, 413, 676, 751
MaeIII GTNAC 1 cut(s) 709
MalI GATC 3 cut(s) 488, 930, 1041
MboI GATC 3 cut(s) 486, 928, 1039
MboII GAAGA 6 cut(s) 434, 578, 620, 661, 851, 969
MfeI CAATTG 2 cut(s) 450, 744
MflI RGATCY 2 cut(s) 486, 1039
MhlI GDGCHC 1 cut(s) 894
MlsI TGGCCA 1 cut(s) 174
MluCI AATT 9 cut(s) 162, 234, 354, 441, 450, 463, 744, 990, 996
MluNI TGGCCA 1 cut(s) 174
MmeI TCCRAC 1 cut(s) 549
Mox20I TGGCCA 1 cut(s) 174
MscI TGGCCA 1 cut(s) 174
MseI TTAA 7 cut(s) 111, 138, 318, 723, 1001, 1173, 1180
MslI CAYNNNNRTG 1 cut(s) 802
Msp20I TGGCCA 1 cut(s) 174
MspI CCGG 1 cut(s) 894
MspR9I CCNGG 4 cut(s) 182, 548, 894, 912
MunI CAATTG 2 cut(s) 450, 744
MvaI CCWGG 3 cut(s) 182, 548, 912
MwoI GCNNNNNNNGC 1 cut(s) 898
NciI CCSGG 1 cut(s) 894
NdeI CATATG 1 cut(s) 799
NdeII GATC 3 cut(s) 486, 928, 1039
NlaIII CATG 4 cut(s) 58, 304, 818, 922
NlaIV GGNNCC 4 cut(s) 117, 118, 349, 979
NmuCI GTSAC 1 cut(s) 709
NspI RCATGY 3 cut(s) 304, 818, 922
NspV TTCGAA 1 cut(s) 219
PaeR7I CTCGAG 1 cut(s) 879
PciI ACATGT 1 cut(s) 918
PciSI GCTCTTC 1 cut(s) 864
PflMI CCANNNNNTGG 1 cut(s) 181
PfoI TCCNGGA 1 cut(s) 180
PkrI GCNGC 5 cut(s) 505, 532, 637, 877, 1086
PpuMI RGGWCCY 1 cut(s) 116
PscI ACATGT 1 cut(s) 918
Psp5II RGGWCCY 1 cut(s) 116
Psp6I CCWGG 3 cut(s) 180, 546, 910
PspEI GGTNACC 1 cut(s) 709
PspGI CCWGG 3 cut(s) 180, 546, 910
PspN4I GGNNCC 4 cut(s) 117, 118, 349, 979
PspPI GGNCC 3 cut(s) 86, 116, 347
PspPPI RGGWCCY 1 cut(s) 116
PsuI RGATCY 2 cut(s) 486, 1039
RsaI GTAC 3 cut(s) 62, 917, 1073
RsaNI GTAC 3 cut(s) 61, 916, 1072
RseI CAYNNNNRTG 1 cut(s) 802
SapI GCTCTTC 1 cut(s) 864
SaqAI TTAA 7 cut(s) 111, 138, 318, 723, 1001, 1173, 1180
SatI GCNGC 5 cut(s) 504, 531, 636, 876, 1085
Sau3AI GATC 3 cut(s) 486, 928, 1039
Sau96I GGNCC 3 cut(s) 86, 116, 347
ScrFI CCNGG 4 cut(s) 182, 548, 894, 912
SduI GDGCHC 1 cut(s) 894
SfaNI GCATC 1 cut(s) 844
Sfr274I CTCGAG 1 cut(s) 879
SfuI TTCGAA 1 cut(s) 219
SinI GGWCC 2 cut(s) 86, 116
SlaI CTCGAG 1 cut(s) 879
SmiMI CAYNNNNRTG 1 cut(s) 802
SmlI CTYRAG 1 cut(s) 879
SmoI CTYRAG 1 cut(s) 879
Sse9I AATT 9 cut(s) 162, 234, 354, 441, 450, 463, 744, 990, 996
SsiI CCGC 3 cut(s) 310, 565, 660
SspI AATATT 1 cut(s) 142
SspMI CTAG 2 cut(s) 44, 374
StyD4I CCNGG 4 cut(s) 180, 546, 892, 910
TaaI ACNGT 3 cut(s) 70, 256, 666
TaiI ACGT 4 cut(s) 172, 416, 679, 754
TaqI TCGA 3 cut(s) 166, 219, 880
TasI AATT 9 cut(s) 162, 234, 354, 441, 450, 463, 744, 990, 996
TatI WGTACW 2 cut(s) 60, 1071
Tru1I TTAA 7 cut(s) 111, 138, 318, 723, 1001, 1173, 1180
Tru9I TTAA 7 cut(s) 111, 138, 318, 723, 1001, 1173, 1180
TscAI CASTG 3 cut(s) 261, 409, 1063
TseFI GTSAC 1 cut(s) 709
TseI GCWGC 5 cut(s) 503, 530, 635, 875, 1084
Tsp45I GTSAC 1 cut(s) 709
TspDTI ATGAA 3 cut(s) 476, 816, 1160
TspRI CASTG 3 cut(s) 261, 409, 1063
Van91I CCANNNNNTGG 1 cut(s) 181
VpaK11BI GGWCC 2 cut(s) 86, 116
XapI RAATTY 3 cut(s) 441, 463, 990
XceI RCATGY 3 cut(s) 304, 818, 922
XhoI CTCGAG 1 cut(s) 879
XmiI GTMKAC 4 cut(s) 248, 511, 923, 1104
XspI CTAG 2 cut(s) 44, 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.