AT4G38640

Belongs to the CTL (choline transporter-like) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0009560
Physical Location & Seq
Reverse (-)
18059614 .. 18062347
2734 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G38640.1

Sequence Viewer

Length: 1671 bp
ATGGCGGCGGACGACGGCGACCCCACTAAATTCGCTGCAATCTACGACTCATCCTCTCCGTCACACCCTCTTCTCTCTAAACCCTCCACGTCCGCTCTCGATTCTCCGCGTCGAAGTGATCCCGAATCCGACCCAACTCAGTTTCTTCAGATCTCCTACAATTTTGGCCCAAGAACTTTCAAGGACATCCCTTTCCTACTTCTCTTCGATCTTCTCGTACTCTCCACCTTTGGTTTTGGAATCTTCTCCATTTTTCATAGAAATAACGATTACGGGAACTCCTCTTCCTTCACCTACGATTTCACCTCTAGCTCCTGCGTCAAAAATTCTACCTTTACGAAAATTTCGGATGGGTACTACTGGGCTTCTTCGAGTGTCATGTACGGCATGGTTTCTTCGTCTGATCCAGTCTTTGAGAAGGATTTGATCTGGACACTTGTTGTAACGCTTATTTTAAGCGTGCCCTTCTGTTTTAGCGTCCTGCTTTTGCTCAAACACTACACTAAGCAGATTGTTTATGCTTGTTTACCTCTCTTTGTCCTTTTTCCCATCTTTTTCAATGTCTATTGGTTTGTCGCCTGTACTCTTAGCTCTTCTTGTAGCGATGCCCTCCCTCTAGCTTACAGAATACTTGTCCTAGTCTTTGTTTTCTTGATCATCGGGATCATTGTCTGGATCATAGTAGCTAATTGGCACAGAATTGATCTTACTATCCAAATCATCAGTGTTGCATCTGATGCCTTGTCCAAAAATTTGAAACTTTTTGTTGTGCTGCCGCTGCTGACTCTCGGGTTAGTGGTGTACTATGCGCCGATTGTGGTGTTCTTGGTGTTTGCAAGGTTTAATGGGAAGTTTGTGCCGCGAGAGTTGGATGGTCAGTACTTTTGTGAGTGGAAAGAAGATTCTTGGGTTCCTGCGTATTACGCTCTTGCCATTTTAACGATGATCTGGTCTCTTGCTGTAATGGTGGAAATGCAAGTGTATGTGATAAGTGGAGCTATTGCTCAGTGGTATTTCTCCAAGGAAGACTCAATCCCTAAAAAATGCATCCGGAGTTCTTTGAGGAATGCATTTGGTCAATCCTTTGGTACGATATGTGTATCAGGACTTCTCATATGCATTGTTCGTGTGGTCCGGGCAATTGTGGACAATGCAAGAGAAGAGAACACACAAGGAATAGTGAACATGGTTCTCCGTTGCTGTGCAAACGCCTTACTTGGTGCCCTTGACTATCTCAACAAGTTCACCATCAACTTTGCTGCAATAACAGGGGAAGCGTATTGCACCTCTGCGAAAATGACTTACGAGCTGTTAAGACGCAACCTACTGTCAGCTGTATTTGTCGAAACGGTTTCCACCAGAATCCTAACCGGAATAGTCTTTGTCCTGTCAGCCGCATATGCAGTCGCGACATGGGCTGTTCTGAGAGGAGTGAGCAACCTGGGTATAGATTCGTACGTGGTGGCTGTACTGGCGTGGGTGTTACTGATTGTGATATTGGCTTTCTTTGTACATGTTCTTGACGATGTGATTGACACAATCTATGTCTGTTACGCGATTGATAGAGACAAAGGGGATGTATGTAAGCAGGAAGTTCACGAGGTTTATGTTCACTTGCCTATCAGCAGAAGCACAAGATCTTCTCTCATCCCAAATGCTCTTAATGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Choline_transpo

Protein Analysis

556

Amino Acids

62.14

Weight (kDa)

6.18

Isoelectric Point (pI)

36.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Choline_transpo PF04515 215 - 523 3.4e-73 Plasma-membrane choline transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1220
AccBSI CCGCTC 1 cut(s) 95
AccII CGCG 4 cut(s) 109, 862, 1409, 1556
AccIII TCCGGA 1 cut(s) 1050
AciI CCGC 7 cut(s) 5, 8, 93, 107, 776, 860, 1395
AclWI GGATC 4 cut(s) 113, 398, 671, 683
AcsI RAATTY 4 cut(s) 29, 325, 342, 751
AcuI CTGAAG 1 cut(s) 131
AflIII ACRYGT 1 cut(s) 1513
AgsI TTSAA 3 cut(s) 181, 559, 757
AjiI CACGTC 1 cut(s) 90
AjnI CCWGG 1 cut(s) 1440
AloI GAACNNNNNNTCC 2 cut(s) 269, 301
AluBI AGCT 7 cut(s) 312, 591, 620, 686, 998, 1309, 1334
AluI AGCT 7 cut(s) 312, 591, 620, 686, 998, 1309, 1334
Alw26I GTCTC 2 cut(s) 957, 1560
AlwI GGATC 4 cut(s) 113, 398, 671, 683
Ama87I CYCGRG 1 cut(s) 788
Aor13HI TCCGGA 1 cut(s) 1050
AoxI GGCC 1 cut(s) 166
ApeKI GCWGC 4 cut(s) 35, 772, 778, 1259
ApoI RAATTY 4 cut(s) 29, 325, 342, 751
AspLEI GCGC 1 cut(s) 811
AspS9I GGNCC 2 cut(s) 167, 1132
AsuC2I CCSGG 1 cut(s) 1136
AsuHPI GGTGA 3 cut(s) 283, 295, 1237
AvaI CYCGRG 1 cut(s) 788
AvaII GGWCC 1 cut(s) 1132
BaeGI GKGCMC 2 cut(s) 465, 1225
BanI GGYRCC 1 cut(s) 1220
BarI GAAGNNNNNNTAC 2 cut(s) 1092, 1124
BauI CACGAG 1 cut(s) 1598
BbsI GAAGAC 1 cut(s) 1032
BbvI GCAGC 4 cut(s) 22, 759, 765, 1246
BccI CCATC 4 cut(s) 344, 557, 866, 1256
BceAI ACGGC 2 cut(s) 31, 400
BciT130I CCWGG 1 cut(s) 1442
BclI TGATCA 1 cut(s) 654
BcnI CCSGG 1 cut(s) 1136
BcoDI GTCTC 2 cut(s) 957, 1560
BfaI CTAG 3 cut(s) 309, 617, 638
BglII AGATCT 2 cut(s) 150, 1637
BisI GCNGC 8 cut(s) 6, 36, 773, 776, 779, 860, 1260, 1395
BlsI GCNGC 8 cut(s) 7, 37, 774, 777, 780, 861, 1261, 1396
BmcAI AGTACT 1 cut(s) 881
Bme1390I CCNGG 2 cut(s) 1136, 1442
Bme18I GGWCC 1 cut(s) 1132
BmeT110I CYCGRG 1 cut(s) 788
BmgBI CACGTC 1 cut(s) 90
BmgT120I GGNCC 2 cut(s) 167, 1132
BmiI GGNNCC 2 cut(s) 912, 1222
BmrFI CCNGG 2 cut(s) 1136, 1442
BmrI ACTGGG 1 cut(s) 370
BmsI GCATC 4 cut(s) 595, 727, 740, 1056
BmuI ACTGGG 1 cut(s) 370
BpiI GAAGAC 1 cut(s) 1032
BpuMI CCSGG 1 cut(s) 1136
BsaAI YACGTR 1 cut(s) 1459
BsaI GGTCTC 1 cut(s) 957
BsaJI CCNNGG 2 cut(s) 1020, 1441
BsaWI WCCGGW 2 cut(s) 1050, 1370
BsaXI ACNNNNNCTCC 2 cut(s) 263, 293
Bse1I ACTGG 3 cut(s) 365, 407, 1476
BseAI TCCGGA 1 cut(s) 1050
BseBI CCWGG 1 cut(s) 1442
BseDI CCNNGG 2 cut(s) 1020, 1441
BseGI GGATG 7 cut(s) 50, 186, 355, 877, 1047, 1582, 1647
BseMII CTCAG 3 cut(s) 152, 1019, 1415
BseNI ACTGG 3 cut(s) 365, 407, 1476
BseRI GAGGAG 2 cut(s) 271, 1443
BseSI GKGCMC 2 cut(s) 465, 1225
BseXI GCAGC 4 cut(s) 22, 759, 765, 1246
Bsh1236I CGCG 4 cut(s) 109, 862, 1409, 1556
BshFI GGCC 1 cut(s) 168
BshNI GGYRCC 1 cut(s) 1220
BsiHKCI CYCGRG 1 cut(s) 788
BsiSI CCGG 3 cut(s) 1051, 1135, 1371
BsiWI CGTACG 1 cut(s) 1455
BsmAI GTCTC 2 cut(s) 957, 1560
BsmI GAATGC 1 cut(s) 1072
BsnI GGCC 1 cut(s) 168
Bso31I GGTCTC 1 cut(s) 957
BsoBI CYCGRG 1 cut(s) 788
Bsp1286I GDGCHC 2 cut(s) 465, 1225
Bsp13I TCCGGA 1 cut(s) 1050
Bsp1407I TGTACA 1 cut(s) 1510
Bsp68I TCGCGA 1 cut(s) 1409
BspACI CCGC 7 cut(s) 5, 8, 93, 107, 776, 860, 1395
BspANI GGCC 1 cut(s) 168
BspCNI CTCAG 3 cut(s) 151, 1018, 1416
BspEI TCCGGA 1 cut(s) 1050
BspFNI CGCG 4 cut(s) 109, 862, 1409, 1556
BspLI GGNNCC 2 cut(s) 912, 1222
BspPI GGATC 4 cut(s) 113, 398, 671, 683
BspQI GCTCTTC 1 cut(s) 598
BspT107I GGYRCC 1 cut(s) 1220
BspTNI GGTCTC 1 cut(s) 957
BsrBI CCGCTC 1 cut(s) 95
BsrGI TGTACA 1 cut(s) 1510
BsrI ACTGG 3 cut(s) 365, 407, 1476
BssECI CCNNGG 2 cut(s) 1020, 1441
BssSI CACGAG 1 cut(s) 1598
BssT1I CCWWGG 1 cut(s) 1020
Bst2BI CACGAG 1 cut(s) 1598
Bst2UI CCWGG 1 cut(s) 1442
Bst4CI ACNGT 2 cut(s) 1329, 1351
Bst6I CTCTTC 5 cut(s) 75, 209, 289, 598, 1155
BstAPI GCANNNNNTGC 1 cut(s) 737
BstAUI TGTACA 1 cut(s) 1510
BstBAI YACGTR 1 cut(s) 1459
BstC8I GCNNGC 1 cut(s) 461
BstDEI CTNAG 5 cut(s) 138, 504, 587, 1005, 1424
BstF5I GGATG 7 cut(s) 50, 186, 355, 877, 1047, 1582, 1647
BstFNI CGCG 4 cut(s) 109, 862, 1409, 1556
BstHHI GCGC 1 cut(s) 811
BstMAI GTCTC 2 cut(s) 957, 1560
BstMWI GCNNNNNNNGC 7 cut(s) 737, 778, 923, 1400, 1415, 1472, 1664
BstNI CCWGG 1 cut(s) 1442
BstNSI RCATGY 1 cut(s) 1517
BstSCI CCNGG 2 cut(s) 1134, 1440
BstSLI GKGCMC 2 cut(s) 465, 1225
BstUI CGCG 4 cut(s) 109, 862, 1409, 1556
BstV1I GCAGC 4 cut(s) 22, 759, 765, 1246
BstV2I GAAGAC 1 cut(s) 1032
BstX2I RGATCY 2 cut(s) 150, 1637
BstYI RGATCY 2 cut(s) 150, 1637
BsuRI GGCC 1 cut(s) 168
BtgZI GCGATG 1 cut(s) 618
BtrI CACGTC 1 cut(s) 90
BtsCI GGATG 7 cut(s) 50, 186, 355, 877, 1047, 1582, 1647
BtsIMutI CAGTG 2 cut(s) 730, 1013
BtuMI TCGCGA 1 cut(s) 1409
Cac8I GCNNGC 1 cut(s) 461
CfoI GCGC 1 cut(s) 811
Cfr13I GGNCC 2 cut(s) 167, 1132
CseI GACGC 4 cut(s) 98, 307, 466, 1326
CviAII CATG 5 cut(s) 379, 388, 1186, 1413, 1514
DdeI CTNAG 5 cut(s) 138, 504, 587, 1005, 1424
Eam1104I CTCTTC 5 cut(s) 75, 209, 289, 598, 1155
EarI CTCTTC 5 cut(s) 75, 209, 289, 598, 1155
EciI GGCGGA 1 cut(s) 23
Eco130I CCWWGG 1 cut(s) 1020
Eco31I GGTCTC 1 cut(s) 957
Eco47I GGWCC 1 cut(s) 1132
Eco57I CTGAAG 1 cut(s) 131
Eco88I CYCGRG 1 cut(s) 788
EcoRII CCWGG 1 cut(s) 1440
EcoT14I CCWWGG 1 cut(s) 1020
EcoT22I ATGCAT 4 cut(s) 1049, 1072, 1121, 1669
ErhI CCWWGG 1 cut(s) 1020
FaeI CATG 5 cut(s) 382, 391, 1189, 1416, 1517
FatI CATG 5 cut(s) 378, 387, 1185, 1412, 1513
FauNDI CATATG 2 cut(s) 1115, 1399
FbaI TGATCA 1 cut(s) 654
Fnu4HI GCNGC 8 cut(s) 6, 36, 773, 776, 779, 860, 1260, 1395
FokI GGATG 7 cut(s) 37, 173, 362, 884, 1034, 1589, 1634
Fsp4HI GCNGC 8 cut(s) 6, 36, 773, 776, 779, 860, 1260, 1395
FspBI CTAG 3 cut(s) 309, 617, 638
GlaI GCGC 1 cut(s) 810
GluI GCNGC 8 cut(s) 6, 36, 773, 776, 779, 860, 1260, 1395
HaeIII GGCC 1 cut(s) 168
HapII CCGG 3 cut(s) 1051, 1135, 1371
HgaI GACGC 4 cut(s) 98, 307, 466, 1326
HhaI GCGC 1 cut(s) 811
Hin1II CATG 5 cut(s) 382, 391, 1189, 1416, 1517
Hin6I GCGC 1 cut(s) 809
HinP1I GCGC 1 cut(s) 809
HinfI GANTC 9 cut(s) 47, 101, 125, 240, 784, 902, 1028, 1362, 1451
HpaII CCGG 3 cut(s) 1051, 1135, 1371
HphI GGTGA 3 cut(s) 283, 295, 1237
Hpy166II GTNNAC 7 cut(s) 527, 802, 1147, 1183, 1245, 1597, 1612
Hpy188I TCNGA 6 cut(s) 130, 150, 349, 403, 736, 1425
Hpy8I GTNNAC 7 cut(s) 527, 802, 1147, 1183, 1245, 1597, 1612
Hpy99I CGWCG 2 cut(s) 17, 114
HpyAV CCTTC 3 cut(s) 298, 412, 475
HpyCH4III ACNGT 2 cut(s) 1329, 1351
HpyCH4IV ACGT 2 cut(s) 89, 1458
HpyF10VI GCNNNNNNNGC 7 cut(s) 737, 778, 923, 1400, 1415, 1472, 1664
HpyF3I CTNAG 5 cut(s) 138, 504, 587, 1005, 1424
HpySE526I ACGT 2 cut(s) 89, 1458
Hsp92II CATG 5 cut(s) 382, 391, 1189, 1416, 1517
HspAI GCGC 1 cut(s) 809
Kpn2I TCCGGA 1 cut(s) 1050
Ksp22I TGATCA 1 cut(s) 654
LguI GCTCTTC 1 cut(s) 598
LmnI GCTCC 2 cut(s) 317, 995
Lsp1109I GCAGC 4 cut(s) 22, 759, 765, 1246
LweI GCATC 4 cut(s) 595, 727, 740, 1056
MaeI CTAG 3 cut(s) 309, 617, 638
MaeII ACGT 2 cut(s) 89, 1458
MaeIII GTNAC 4 cut(s) 60, 442, 1482, 1550
MbiI CCGCTC 1 cut(s) 95
MfeI CAATTG 1 cut(s) 1140
MflI RGATCY 2 cut(s) 150, 1637
MhlI GDGCHC 2 cut(s) 465, 1225
MluCI AATT 8 cut(s) 29, 160, 325, 342, 688, 699, 751, 1140
MlyI GAGTC 3 cut(s) 41, 778, 1022
MmeI TCCRAC 2 cut(s) 153, 849
Mph1103I ATGCAT 4 cut(s) 1049, 1072, 1121, 1669
MroI TCCGGA 1 cut(s) 1050
MseI TTAA 5 cut(s) 455, 843, 938, 1313, 1662
MspA1I CMGCKG 2 cut(s) 778, 1334
MspI CCGG 3 cut(s) 1051, 1135, 1371
MspR9I CCNGG 2 cut(s) 1136, 1442
MunI CAATTG 1 cut(s) 1140
Mva1269I GAATGC 1 cut(s) 1072
MvaI CCWGG 1 cut(s) 1442
MvnI CGCG 4 cut(s) 109, 862, 1409, 1556
MwoI GCNNNNNNNGC 7 cut(s) 737, 778, 923, 1400, 1415, 1472, 1664
NciI CCSGG 1 cut(s) 1136
NdeI CATATG 2 cut(s) 1115, 1399
NlaIII CATG 5 cut(s) 382, 391, 1189, 1416, 1517
NlaIV GGNNCC 2 cut(s) 912, 1222
NmuCI GTSAC 1 cut(s) 60
NruI TCGCGA 1 cut(s) 1409
NsiI ATGCAT 4 cut(s) 1049, 1072, 1121, 1669
NspI RCATGY 1 cut(s) 1517
PciI ACATGT 1 cut(s) 1513
PciSI GCTCTTC 1 cut(s) 598
PcsI WCGNNNNNNNCGW 1 cut(s) 213
PctI GAATGC 1 cut(s) 1072
PfeI GAWTC 6 cut(s) 101, 125, 240, 902, 1362, 1451
Pfl23II CGTACG 1 cut(s) 1455
PkrI GCNGC 8 cut(s) 7, 37, 774, 777, 780, 861, 1261, 1396
PleI GAGTC 3 cut(s) 41, 778, 1022
PpsI GAGTC 3 cut(s) 41, 778, 1022
Ppu21I YACGTR 1 cut(s) 1459
PscI ACATGT 1 cut(s) 1513
Psp6I CCWGG 1 cut(s) 1440
PspGI CCWGG 1 cut(s) 1440
PspLI CGTACG 1 cut(s) 1455
PspN4I GGNNCC 2 cut(s) 912, 1222
PspPI GGNCC 2 cut(s) 167, 1132
PsuI RGATCY 2 cut(s) 150, 1637
PvuII CAGCTG 1 cut(s) 1334
RruI TCGCGA 1 cut(s) 1409
SapI GCTCTTC 1 cut(s) 598
SaqAI TTAA 5 cut(s) 455, 843, 938, 1313, 1662
SatI GCNGC 8 cut(s) 6, 36, 773, 776, 779, 860, 1260, 1395
Sau96I GGNCC 2 cut(s) 167, 1132
ScaI AGTACT 1 cut(s) 881
SchI GAGTC 3 cut(s) 41, 778, 1022
ScrFI CCNGG 2 cut(s) 1136, 1442
SduI GDGCHC 2 cut(s) 465, 1225
SfaNI GCATC 4 cut(s) 595, 727, 740, 1056
SinI GGWCC 1 cut(s) 1132
Sse9I AATT 8 cut(s) 29, 160, 325, 342, 688, 699, 751, 1140
SsiI CCGC 7 cut(s) 5, 8, 93, 107, 776, 860, 1395
SspMI CTAG 3 cut(s) 309, 617, 638
StyD4I CCNGG 2 cut(s) 1134, 1440
StyI CCWWGG 1 cut(s) 1020
TaaI ACNGT 2 cut(s) 1329, 1351
TaiI ACGT 2 cut(s) 92, 1461
TaqI TCGA 5 cut(s) 99, 112, 207, 371, 1344
TasI AATT 8 cut(s) 29, 160, 325, 342, 688, 699, 751, 1140
TatI WGTACW 5 cut(s) 581, 801, 879, 1468, 1510
TauI GCSGC 4 cut(s) 8, 778, 862, 1397
TfiI GAWTC 6 cut(s) 101, 125, 240, 902, 1362, 1451
Tru1I TTAA 5 cut(s) 455, 843, 938, 1313, 1662
Tru9I TTAA 5 cut(s) 455, 843, 938, 1313, 1662
TscAI CASTG 2 cut(s) 730, 1013
TseFI GTSAC 1 cut(s) 60
TseI GCWGC 4 cut(s) 35, 772, 778, 1259
Tsp45I GTSAC 1 cut(s) 60
TspDTI ATGAA 1 cut(s) 245
TspGWI ACGGA 2 cut(s) 48, 1184
TspRI CASTG 2 cut(s) 730, 1013
VpaK11BI GGWCC 1 cut(s) 1132
XapI RAATTY 4 cut(s) 29, 325, 342, 751
XceI RCATGY 1 cut(s) 1517
XspI CTAG 3 cut(s) 309, 617, 638
ZrmI AGTACT 1 cut(s) 881
Zsp2I ATGCAT 4 cut(s) 1049, 1072, 1121, 1669
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.