Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8225484.1

Orthogroup ID

OG0009560

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 747

Gene Structure 747 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8225484.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 430 bp

cccgaagaacccagcaagcccatctccctctacgactcgtcgtccactcccctcctctccaaacccgacgacccgccacctcccccctccccctactccgacgaacccgactccgacgcgacccagtacctccagatctcctacaaccacgacccgcgtcccttcaaggacctccctttctccatcctcttcgtcctcctcgtcctcgccaccttcggcgtcggaatcttcgccgtcttccaccgcaacgccgactactccagcctctcctcctacgtatacgactccgattccacctcctgcgtcaacaacgcttctttgactcatggcctcgccaactgggaccctctcagttcatcgtcatcttttgtagagggtttgacatggaccctagtcatcaccttaatcttgagcttgcccatttggttcg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Choline_transpo

Protein Analysis

143

Amino Acids

15.75

Weight (kDa)

4.16

Isoelectric Point (pI)

51.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009560)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38640
fragaria_vesca	FvH4_2g01450 FvH4_2g01450
malus_domestica	MD05G1119500.v1.1 MD10G1123200.v1.1
prunus_persica	Prupe.8G163700_v2.0.a1 Prupe.8G163700_v2.0.a1
pyrus_communis	pycom05g11350 pycom10g10550
rosa_chinensis	RchiOBHm_Chr6g0244091
rosa_laevigata	RLG00000015383 RLG00000018378
rosa_multiflora	Rmu_co8225484.1_g000001 Rmu_sc0024622.1_g000001
rosa_roxburghii	Rroxscaffold_7G00216080
rosa_rugosa	Rorug05G0507300
rosa_samantha	Rh3BG287100 Rh6AG021800 Rh6BG017500 Rh6CG014200 Rh6DG015400
rosa_wichuraiana	Rw6G001790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	279
AccII	CGCG	2 cut(s)	119, 157
AciI	CCGC	3 cut(s)	74, 155, 244
AcyI	GRCGYC	1 cut(s)	219
AfaI	GTAC	1 cut(s)	128
AgsI	TTSAA	1 cut(s)	166
AhdI	GACNNNNNGTC	1 cut(s)	40
AluBI	AGCT	1 cut(s)	414
AluI	AGCT	1 cut(s)	414
AoxI	GGCC	1 cut(s)	328
AspS9I	GGNCC	3 cut(s)	169, 343, 387
AsuHPI	GGTGA	1 cut(s)	391
AvaII	GGWCC	3 cut(s)	169, 343, 387
BbsI	GAAGAC	1 cut(s)	229
BccI	CCATC	2 cut(s)	29, 191
BceAI	ACGGC	1 cut(s)	218
BfaI	CTAG	1 cut(s)	392
BglII	AGATCT	1 cut(s)	135
Bme18I	GGWCC	3 cut(s)	169, 343, 387
BmeRI	GACNNNNNGTC	1 cut(s)	40
BmgT120I	GGNCC	3 cut(s)	169, 343, 387
BmiI	GGNNCC	3 cut(s)	344, 345, 389
BmrI	ACTGGG	2 cut(s)	118, 349
BmuI	ACTGGG	2 cut(s)	118, 349
BoxI	GACNNNNGTC	2 cut(s)	156, 392
BpiI	GAAGAC	1 cut(s)	229
BpmI	CTGGAG	2 cut(s)	116, 244
BpuEI	CTTGAG	1 cut(s)	430
BsaAI	YACGTR	1 cut(s)	277
BsaHI	GRCGYC	1 cut(s)	219
Bse1I	ACTGG	2 cut(s)	124, 344
BseGI	GGATG	1 cut(s)	183
BseMII	CTCAG	1 cut(s)	364
BseNI	ACTGG	2 cut(s)	124, 344
BseRI	GAGGAG	3 cut(s)	44, 188, 259
BseYI	CCCAGC	1 cut(s)	11
Bsh1236I	CGCG	2 cut(s)	119, 157
BshFI	GGCC	1 cut(s)	330
BslFI	GGGAC	2 cut(s)	144, 356
BsmFI	GGGAC	2 cut(s)	144, 356
BsnI	GGCC	1 cut(s)	330
Bsp143I	GATC	1 cut(s)	135
BspACI	CCGC	3 cut(s)	74, 155, 244
BspANI	GGCC	1 cut(s)	330
BspCNI	CTCAG	1 cut(s)	363
BspFNI	CGCG	2 cut(s)	119, 157
BspLI	GGNNCC	3 cut(s)	344, 345, 389
BsrI	ACTGG	2 cut(s)	124, 344
BssMI	GATC	1 cut(s)	135
BssNAI	GTATAC	1 cut(s)	280
BssNI	GRCGYC	1 cut(s)	219
Bst1107I	GTATAC	1 cut(s)	280
Bst6I	CTCTTC	1 cut(s)	194
BstACI	GRCGYC	1 cut(s)	219
BstBAI	YACGTR	1 cut(s)	277
BstC8I	GCNNGC	2 cut(s)	17, 416
BstDEI	CTNAG	1 cut(s)	350
BstF5I	GGATG	1 cut(s)	183
BstFNI	CGCG	2 cut(s)	119, 157
BstKTI	GATC	1 cut(s)	138
BstMBI	GATC	1 cut(s)	135
BstPAI	GACNNNNGTC	2 cut(s)	156, 392
BstSNI	TACGTA	1 cut(s)	277
BstUI	CGCG	2 cut(s)	119, 157
BstV2I	GAAGAC	1 cut(s)	229
BstX2I	RGATCY	1 cut(s)	135
BstYI	RGATCY	1 cut(s)	135
BstZ17I	GTATAC	1 cut(s)	280
BsuRI	GGCC	1 cut(s)	330
BtsCI	GGATG	1 cut(s)	183
Cac8I	GCNNGC	2 cut(s)	17, 416
Cfr13I	GGNCC	3 cut(s)	169, 343, 387
CseI	GACGC	4 cut(s)	125, 146, 208, 292
Csp6I	GTAC	1 cut(s)	127
CviAII	CATG	2 cut(s)	326, 384
CviJI	RGCY	4 cut(s)	19, 264, 330, 414
CviKI_1	RGCY	4 cut(s)	19, 264, 330, 414
CviQI	GTAC	1 cut(s)	127
DdeI	CTNAG	1 cut(s)	350
DpnI	GATC	1 cut(s)	137
DpnII	GATC	1 cut(s)	135
DriI	GACNNNNNGTC	1 cut(s)	40
Eam1104I	CTCTTC	1 cut(s)	194
Eam1105I	GACNNNNNGTC	1 cut(s)	40
EarI	CTCTTC	1 cut(s)	194
Eco105I	TACGTA	1 cut(s)	277
Eco47I	GGWCC	3 cut(s)	169, 343, 387
EcoO109I	RGGNCCY	2 cut(s)	169, 343
FaeI	CATG	2 cut(s)	329, 387
FaiI	YATR	3 cut(s)	280, 327, 385
FaqI	GGGAC	2 cut(s)	144, 356
FatI	CATG	2 cut(s)	325, 383
FauI	CCCGC	2 cut(s)	81, 162
FblI	GTMKAC	1 cut(s)	279
FokI	GGATG	1 cut(s)	170
FspBI	CTAG	1 cut(s)	392
GsaI	CCCAGC	1 cut(s)	15
GsuI	CTGGAG	2 cut(s)	116, 244
HaeIII	GGCC	1 cut(s)	330
HgaI	GACGC	4 cut(s)	125, 146, 208, 292
Hin1I	GRCGYC	1 cut(s)	219
Hin1II	CATG	2 cut(s)	329, 387
HincII	GTYRAC	1 cut(s)	307
HindII	GTYRAC	1 cut(s)	307
HinfI	GANTC	6 cut(s)	35, 110, 225, 284, 290, 322
HphI	GGTGA	1 cut(s)	391
Hpy166II	GTNNAC	3 cut(s)	45, 280, 307
Hpy188I	TCNGA	4 cut(s)	100, 115, 224, 289
Hpy188III	TCNNGA	2 cut(s)	133, 409
Hpy8I	GTNNAC	3 cut(s)	45, 280, 307
Hpy99I	CGWCG	5 cut(s)	43, 71, 104, 119, 224
HpyAV	CCTTC	2 cut(s)	172, 223
HpyCH4IV	ACGT	1 cut(s)	276
HpyF3I	CTNAG	1 cut(s)	350
HpySE526I	ACGT	1 cut(s)	276
Hsp92I	GRCGYC	1 cut(s)	219
Hsp92II	CATG	2 cut(s)	329, 387
KflI	GGGWCCC	1 cut(s)	343
Kzo9I	GATC	1 cut(s)	135
LpnPI	CCDG	6 cut(s)	25, 137, 146, 274, 313, 325
MaeI	CTAG	1 cut(s)	392
MaeII	ACGT	1 cut(s)	276
MalI	GATC	1 cut(s)	137
MboI	GATC	1 cut(s)	135
MboII	GAAGA	4 cut(s)	17, 181, 220, 229
MflI	RGATCY	1 cut(s)	135
MlyI	GAGTC	4 cut(s)	29, 104, 278, 316
MmeI	TCCRAC	3 cut(s)	123, 138, 202
MseI	TTAA	1 cut(s)	404
MvnI	CGCG	2 cut(s)	119, 157
NdeII	GATC	1 cut(s)	135
NlaIII	CATG	2 cut(s)	329, 387
NlaIV	GGNNCC	3 cut(s)	344, 345, 389
PcsI	WCGNNNNNNNCGW	1 cut(s)	198
PfeI	GAWTC	2 cut(s)	225, 290
PleI	GAGTC	4 cut(s)	29, 104, 278, 316
PpsI	GAGTC	4 cut(s)	29, 104, 278, 316
Ppu21I	YACGTR	1 cut(s)	277
PpuMI	RGGWCCY	2 cut(s)	169, 343
PshAI	GACNNNNGTC	2 cut(s)	156, 392
Psp5II	RGGWCCY	2 cut(s)	169, 343
PspFI	CCCAGC	1 cut(s)	11
PspN4I	GGNNCC	3 cut(s)	344, 345, 389
PspPI	GGNCC	3 cut(s)	169, 343, 387
PspPPI	RGGWCCY	2 cut(s)	169, 343
PsuI	RGATCY	1 cut(s)	135
RsaI	GTAC	1 cut(s)	128
RsaNI	GTAC	1 cut(s)	127
SaqAI	TTAA	1 cut(s)	404
Sau3AI	GATC	1 cut(s)	135
Sau96I	GGNCC	3 cut(s)	169, 343, 387
SchI	GAGTC	4 cut(s)	29, 104, 278, 316
SetI	ASST	8 cut(s)	82, 132, 174, 215, 279, 299, 404, 416
SinI	GGWCC	3 cut(s)	169, 343, 387
SmlI	CTYRAG	1 cut(s)	409
SmoI	CTYRAG	1 cut(s)	409
SnaBI	TACGTA	1 cut(s)	277
SsiI	CCGC	3 cut(s)	74, 155, 244
SspMI	CTAG	1 cut(s)	392
TaiI	ACGT	1 cut(s)	279
TfiI	GAWTC	2 cut(s)	225, 290
Tru1I	TTAA	1 cut(s)	404
Tru9I	TTAA	1 cut(s)	404
TspDTI	ATGAA	1 cut(s)	345
VpaK11BI	GGWCC	3 cut(s)	169, 343, 387
XmiI	GTMKAC	1 cut(s)	279
XspI	CTAG	1 cut(s)	392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.