Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0024622.1

Orthogroup ID

OG0009560

Physical Location & Seq

Genomic Coordinates Reverse (-)

411 .. 3193

Gene Structure 2783 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0024622.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ctgtttggggttctgcctttgttgactctcgggctggtggtgtactatgcacccattgtggtgttcttggtgtttgctaggctgaatgggaagattgcggcggaagaatccgatgaggtgtatagttgtgtgtggaagcaggattcttgggtcccggcttattatgcattggcgattttgacaatgttgtggtctctgacgattatggtggaatcccaggtgtatgtgattagtgggactgttgctcagtggtatttcaccaaggaggactcgactccaaagcgggttattagaagttctttgagaaatgcctttggcccatcctttggcactgtgtgtctatctggcttacttatatgtgttgttcgaatggtgcgtacaattgttgatggtgcaagaaaagagggttcaggcgggatactgaatcttatgttacgttgctgtgttaatgccttgttgtcagcaattgattttctcaacaagttcacaatcatctttgctgcaataactggtgaatcttactgttcatctgcaaggatgacgtatgagcttctaaaacgtaatcttctttctgcggtttttgtggaaaccatctccactcgacttttggctggaatcatcttcgtactctcagcagtatatgcaattgtggcatgcgctatcttaaaggccgtgagcaatcttggggttgatgcgtactttgtggctgcattggcctgggtgctgctgatcttggtactgggtttctttgtccacgtgctggataatgtgatcgacaccgtgtacgtgtgctacgccatagatagggacagaggggaagtttgtaaacaagacgttcatgaagtttatgttaacttaccaattagtagaaatcatagaccttcatctatgatcaccagaactctgggtgtatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Choline_transpo

Protein Analysis

304

Amino Acids

33.58

Weight (kDa)

8.35

Isoelectric Point (pI)

33.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009560)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38640
fragaria_vesca	FvH4_2g01450 FvH4_2g01450
malus_domestica	MD05G1119500.v1.1 MD10G1123200.v1.1
prunus_persica	Prupe.8G163700_v2.0.a1 Prupe.8G163700_v2.0.a1
pyrus_communis	pycom05g11350 pycom10g10550
rosa_chinensis	RchiOBHm_Chr6g0244091
rosa_laevigata	RLG00000015383 RLG00000018378
rosa_multiflora	Rmu_co8225484.1_g000001 Rmu_sc0024622.1_g000001
rosa_roxburghii	Rroxscaffold_7G00216080
rosa_rugosa	Rorug05G0507300
rosa_samantha	Rh3BG287100 Rh6AG021800 Rh6BG017500 Rh6CG014200 Rh6DG015400
rosa_wichuraiana	Rw6G001790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	326, 760
AciI	CCGC	5 cut(s)	98, 101, 283, 414, 575
AcvI	CACGTG	1 cut(s)	757
AdeI	CACNNNGTG	1 cut(s)	336
AfaI	GTAC	6 cut(s)	44, 379, 627, 698, 738, 785
AfiI	CCNNNNNNNGG	3 cut(s)	326, 760, 804
AflIII	ACRYGT	1 cut(s)	786
AjnI	CCWGG	2 cut(s)	216, 716
AluBI	AGCT	1 cut(s)	550
AluI	AGCT	1 cut(s)	550
Alw26I	GTCTC	1 cut(s)	198
Ama87I	CYCGRG	1 cut(s)	29
AoxI	GGCC	3 cut(s)	316, 669, 714
ApeKI	GCWGC	3 cut(s)	500, 707, 724
AspLEI	GCGC	1 cut(s)	659
AspS9I	GGNCC	2 cut(s)	151, 317
AsuC2I	CCSGG	1 cut(s)	155
AsuHPI	GGTGA	3 cut(s)	250, 524, 886
AsuII	TTCGAA	1 cut(s)	367
AvaI	CYCGRG	1 cut(s)	29
AvaII	GGWCC	1 cut(s)	151
BbrPI	CACGTG	1 cut(s)	757
BbvI	GCAGC	3 cut(s)	487, 694, 711
BccI	CCATC	3 cut(s)	328, 383, 599
BceAI	ACGGC	1 cut(s)	656
BciT130I	CCWGG	2 cut(s)	218, 718
BciVI	GTATCC	1 cut(s)	411
BclI	TGATCA	1 cut(s)	891
BcnI	CCSGG	1 cut(s)	155
BcoDI	GTCTC	1 cut(s)	198
BfaI	CTAG	1 cut(s)	78
BfuI	GTATCC	1 cut(s)	411
BisI	GCNGC	4 cut(s)	99, 501, 708, 725
BlsI	GCNGC	4 cut(s)	100, 502, 709, 726
Bme1390I	CCNGG	3 cut(s)	155, 218, 718
Bme18I	GGWCC	1 cut(s)	151
BmeT110I	CYCGRG	1 cut(s)	29
BmgT120I	GGNCC	2 cut(s)	151, 317
BmiI	GGNNCC	2 cut(s)	152, 153
BmrFI	CCNGG	3 cut(s)	155, 218, 718
BmrI	ACTGGG	1 cut(s)	749
BmsI	GCATC	1 cut(s)	682
BmuI	ACTGGG	1 cut(s)	749
Bpu14I	TTCGAA	1 cut(s)	367
BpuMI	CCSGG	1 cut(s)	155
BsaAI	YACGTR	2 cut(s)	757, 787
BsaI	GGTCTC	1 cut(s)	198
BsaJI	CCNNGG	3 cut(s)	216, 261, 717
Bsc4I	CCNNNNNNNGG	3 cut(s)	326, 760, 804
Bse1I	ACTGG	2 cut(s)	514, 744
BseBI	CCWGG	2 cut(s)	218, 718
BseDI	CCNNGG	3 cut(s)	216, 261, 717
BseGI	GGATG	2 cut(s)	320, 543
BseLI	CCNNNNNNNGG	3 cut(s)	326, 760, 804
BseMII	CTCAG	2 cut(s)	260, 645
BseNI	ACTGG	2 cut(s)	514, 744
BseXI	GCAGC	3 cut(s)	487, 694, 711
BshFI	GGCC	3 cut(s)	318, 671, 716
BsiHKCI	CYCGRG	1 cut(s)	29
BsiSI	CCGG	1 cut(s)	155
BslFI	GGGAC	3 cut(s)	137, 250, 821
BslI	CCNNNNNNNGG	3 cut(s)	326, 760, 804
BsmAI	GTCTC	1 cut(s)	198
BsmFI	GGGAC	3 cut(s)	137, 250, 821
BsnI	GGCC	3 cut(s)	318, 671, 716
Bso31I	GGTCTC	1 cut(s)	198
BsoBI	CYCGRG	1 cut(s)	29
Bsp119I	TTCGAA	1 cut(s)	367
Bsp143I	GATC	3 cut(s)	729, 771, 891
BspACI	CCGC	5 cut(s)	98, 101, 283, 414, 575
BspANI	GGCC	3 cut(s)	318, 671, 716
BspCNI	CTCAG	2 cut(s)	259, 644
BspHI	TCATGA	1 cut(s)	838
BspLI	GGNNCC	2 cut(s)	152, 153
BspT104I	TTCGAA	1 cut(s)	367
BspTNI	GGTCTC	1 cut(s)	198
BsrI	ACTGG	2 cut(s)	514, 744
BssECI	CCNNGG	3 cut(s)	216, 261, 717
BssMI	GATC	3 cut(s)	729, 771, 891
BssT1I	CCWWGG	1 cut(s)	261
Bst2UI	CCWGG	2 cut(s)	218, 718
Bst4CI	ACNGT	4 cut(s)	241, 334, 524, 781
BstAPI	GCANNNNNTGC	1 cut(s)	641
BstBAI	YACGTR	2 cut(s)	757, 787
BstBI	TTCGAA	1 cut(s)	367
BstC8I	GCNNGC	1 cut(s)	655
BstDEI	CTNAG	2 cut(s)	246, 631
BstF5I	GGATG	2 cut(s)	320, 543
BstHHI	GCGC	1 cut(s)	659
BstKTI	GATC	3 cut(s)	732, 774, 894
BstMAI	GTCTC	1 cut(s)	198
BstMBI	GATC	3 cut(s)	729, 771, 891
BstMWI	GCNNNNNNNGC	4 cut(s)	164, 641, 650, 713
BstNI	CCWGG	2 cut(s)	218, 718
BstNSI	RCATGY	1 cut(s)	657
BstSCI	CCNGG	3 cut(s)	153, 216, 716
BstV1I	GCAGC	3 cut(s)	487, 694, 711
BstXI	CCANNNNNNTGG	1 cut(s)	904
BsuI	GTATCC	1 cut(s)	411
BsuRI	GGCC	3 cut(s)	318, 671, 716
BtsCI	GGATG	2 cut(s)	320, 543
BtsIMutI	CAGTG	2 cut(s)	254, 330
Cac8I	GCNNGC	1 cut(s)	655
CciI	TCATGA	1 cut(s)	838
CfoI	GCGC	1 cut(s)	659
Cfr13I	GGNCC	2 cut(s)	151, 317
Csp6I	GTAC	6 cut(s)	43, 378, 626, 697, 737, 784
CviAII	CATG	2 cut(s)	654, 839
CviQI	GTAC	6 cut(s)	43, 378, 626, 697, 737, 784
DdeI	CTNAG	2 cut(s)	246, 631
DpnI	GATC	3 cut(s)	731, 773, 893
DpnII	GATC	3 cut(s)	729, 771, 891
DraIII	CACNNNGTG	1 cut(s)	336
EciI	GGCGGA	1 cut(s)	116
Eco130I	CCWWGG	1 cut(s)	261
Eco31I	GGTCTC	1 cut(s)	198
Eco47I	GGWCC	1 cut(s)	151
Eco72I	CACGTG	1 cut(s)	757
Eco88I	CYCGRG	1 cut(s)	29
EcoO109I	RGGNCCY	1 cut(s)	151
EcoRII	CCWGG	2 cut(s)	216, 716
EcoT14I	CCWWGG	1 cut(s)	261
EcoT22I	ATGCAT	1 cut(s)	169
ErhI	CCWWGG	1 cut(s)	261
FaeI	CATG	2 cut(s)	657, 842
FaqI	GGGAC	3 cut(s)	137, 250, 821
FatI	CATG	2 cut(s)	653, 838
FauI	CCCGC	2 cut(s)	276, 407
FbaI	TGATCA	1 cut(s)	891
Fnu4HI	GCNGC	4 cut(s)	99, 501, 708, 725
FokI	GGATG	2 cut(s)	307, 550
Fsp4HI	GCNGC	4 cut(s)	99, 501, 708, 725
FspBI	CTAG	1 cut(s)	78
GlaI	GCGC	1 cut(s)	658
GluI	GCNGC	4 cut(s)	99, 501, 708, 725
HaeIII	GGCC	3 cut(s)	318, 671, 716
HapII	CCGG	1 cut(s)	155
HhaI	GCGC	1 cut(s)	659
Hin1II	CATG	2 cut(s)	657, 842
Hin6I	GCGC	1 cut(s)	657
HinP1I	GCGC	1 cut(s)	657
HincII	GTYRAC	2 cut(s)	24, 853
HindII	GTYRAC	2 cut(s)	24, 853
HinfI	GANTC	9 cut(s)	25, 107, 143, 212, 269, 274, 424, 515, 615
HpaI	GTTAAC	1 cut(s)	853
HpaII	CCGG	1 cut(s)	155
HphI	GGTGA	3 cut(s)	250, 524, 886
Hpy166II	GTNNAC	7 cut(s)	24, 43, 486, 754, 784, 827, 853
Hpy188I	TCNGA	2 cut(s)	112, 198
Hpy188III	TCNNGA	1 cut(s)	839
Hpy8I	GTNNAC	7 cut(s)	24, 43, 486, 754, 784, 827, 853
HpyAV	CCTTC	1 cut(s)	891
HpyCH4III	ACNGT	4 cut(s)	241, 334, 524, 781
HpyCH4IV	ACGT	6 cut(s)	436, 542, 559, 756, 786, 834
HpyCH4V	TGCA	7 cut(s)	50, 167, 395, 503, 533, 644, 710
HpyF10VI	GCNNNNNNNGC	4 cut(s)	164, 641, 650, 713
HpyF3I	CTNAG	2 cut(s)	246, 631
HpySE526I	ACGT	6 cut(s)	436, 542, 559, 756, 786, 834
Hsp92II	CATG	2 cut(s)	657, 842
HspAI	GCGC	1 cut(s)	657
KflI	GGGWCCC	1 cut(s)	151
Ksp22I	TGATCA	1 cut(s)	891
KspAI	GTTAAC	1 cut(s)	853
Kzo9I	GATC	3 cut(s)	729, 771, 891
Lsp1109I	GCAGC	3 cut(s)	487, 694, 711
LweI	GCATC	1 cut(s)	682
MaeI	CTAG	1 cut(s)	78
MaeII	ACGT	6 cut(s)	436, 542, 559, 756, 786, 834
MaeIII	GTNAC	1 cut(s)	432
MalI	GATC	3 cut(s)	731, 773, 893
MboI	GATC	3 cut(s)	729, 771, 891
MboII	GAAGA	4 cut(s)	103, 116, 557, 613
MfeI	CAATTG	3 cut(s)	381, 465, 645
MluCI	AATT	4 cut(s)	381, 465, 645, 861
MlyI	GAGTC	3 cut(s)	19, 263, 268
MnlI	CCTC	4 cut(s)	109, 259, 397, 806
Mph1103I	ATGCAT	1 cut(s)	169
MseI	TTAA	3 cut(s)	447, 665, 852
MslI	CAYNNNNRTG	1 cut(s)	59
MspI	CCGG	1 cut(s)	155
MspR9I	CCNGG	3 cut(s)	155, 218, 718
MunI	CAATTG	3 cut(s)	381, 465, 645
MvaI	CCWGG	2 cut(s)	218, 718
MwoI	GCNNNNNNNGC	4 cut(s)	164, 641, 650, 713
NciI	CCSGG	1 cut(s)	155
NdeII	GATC	3 cut(s)	729, 771, 891
NlaIII	CATG	2 cut(s)	657, 842
NlaIV	GGNNCC	2 cut(s)	152, 153
NsiI	ATGCAT	1 cut(s)	169
NspI	RCATGY	1 cut(s)	657
NspV	TTCGAA	1 cut(s)	367
PaeI	GCATGC	1 cut(s)	657
PagI	TCATGA	1 cut(s)	838
PcsI	WCGNNNNNNNCGW	1 cut(s)	373
PfeI	GAWTC	6 cut(s)	107, 143, 212, 424, 515, 615
PflMI	CCANNNNNTGG	2 cut(s)	326, 760
PkrI	GCNGC	4 cut(s)	100, 502, 709, 726
PleI	GAGTC	3 cut(s)	19, 263, 268
PmaCI	CACGTG	1 cut(s)	757
PmlI	CACGTG	1 cut(s)	757
PpsI	GAGTC	3 cut(s)	19, 263, 268
Ppu21I	YACGTR	2 cut(s)	757, 787
PpuMI	RGGWCCY	1 cut(s)	151
Psp5II	RGGWCCY	1 cut(s)	151
Psp6I	CCWGG	2 cut(s)	216, 716
PspCI	CACGTG	1 cut(s)	757
PspGI	CCWGG	2 cut(s)	216, 716
PspN4I	GGNNCC	2 cut(s)	152, 153
PspPI	GGNCC	2 cut(s)	151, 317
PspPPI	RGGWCCY	1 cut(s)	151
RsaI	GTAC	6 cut(s)	44, 379, 627, 698, 738, 785
RsaNI	GTAC	6 cut(s)	43, 378, 626, 697, 737, 784
RseI	CAYNNNNRTG	1 cut(s)	59
SaqAI	TTAA	3 cut(s)	447, 665, 852
SatI	GCNGC	4 cut(s)	99, 501, 708, 725
Sau3AI	GATC	3 cut(s)	729, 771, 891
Sau96I	GGNCC	2 cut(s)	151, 317
SchI	GAGTC	3 cut(s)	19, 263, 268
ScrFI	CCNGG	3 cut(s)	155, 218, 718
SfaNI	GCATC	1 cut(s)	682
SfuI	TTCGAA	1 cut(s)	367
SinI	GGWCC	1 cut(s)	151
SmiMI	CAYNNNNRTG	1 cut(s)	59
SphI	GCATGC	1 cut(s)	657
Sse9I	AATT	4 cut(s)	381, 465, 645, 861
SsiI	CCGC	5 cut(s)	98, 101, 283, 414, 575
SspMI	CTAG	1 cut(s)	78
StyD4I	CCNGG	3 cut(s)	153, 216, 716
StyI	CCWWGG	1 cut(s)	261
TaaI	ACNGT	4 cut(s)	241, 334, 524, 781
TaiI	ACGT	6 cut(s)	439, 545, 562, 759, 789, 837
TaqI	TCGA	4 cut(s)	272, 367, 601, 774
TasI	AATT	4 cut(s)	381, 465, 645, 861
TatI	WGTACW	1 cut(s)	42
TauI	GCSGC	1 cut(s)	101
TfiI	GAWTC	6 cut(s)	107, 143, 212, 424, 515, 615
Tru1I	TTAA	3 cut(s)	447, 665, 852
Tru9I	TTAA	3 cut(s)	447, 665, 852
TscAI	CASTG	2 cut(s)	254, 337
TseI	GCWGC	3 cut(s)	500, 707, 724
TspDTI	ATGAA	4 cut(s)	516, 827, 855, 873
TspRI	CASTG	2 cut(s)	254, 337
Van91I	CCANNNNNTGG	2 cut(s)	326, 760
VpaK11BI	GGWCC	1 cut(s)	151
XceI	RCATGY	1 cut(s)	657
XcmI	CCANNNNNNNNNTGG	1 cut(s)	604
XspI	CTAG	1 cut(s)	78
Zsp2I	ATGCAT	1 cut(s)	169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.