RLG00000018378

Belongs to the CTL (choline transporter-like) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0009560
Physical Location & Seq
Forward (+)
28965376 .. 28966413
1038 bp
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UTR
Exon/CDS
Intron
RLM00000018378

Sequence Viewer

Length: 366 bp
ATGGGCAGCTCCGAAGAACCTAGCAAGCCCATCTCCCTCTACGACTCGTCGTCCACTCCCCTCCTCTCCAAACCCAACACGCCGCCAACTCATCCCTCTCTTTACTCCGACCAACCTGACTCGGACCCTACCCAGTACCTCCAGAACTCCTACAACCACGAACCTCATCCCTTCAAGGACCTCCCTTTCCTAATTCTCTTCCCCACCTTCGACATCGGAATCTTCATTGTCTTCCACCGCAACTCCGATTACTCCAGTCTCTCCTCCTACGAATACAACTCTGATTCCACCTCCTGCGTCAAGAACGCTTCTTCTTTCACTCCTGGGCTTGGCGGAGGAAGAGGGTTTCATGGCCTCCCTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Choline_transpo

Protein Analysis

122

Amino Acids

13.35

Weight (kDa)

5.06

Isoelectric Point (pI)

51.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 83, 238, 333
AfaI GTAC 1 cut(s) 137
AfiI CCNNNNNNNGG 1 cut(s) 329
AgsI TTSAA 1 cut(s) 175
AhdI GACNNNNNGTC 1 cut(s) 49
AjnI CCWGG 1 cut(s) 322
AluBI AGCT 1 cut(s) 9
AluI AGCT 1 cut(s) 9
Alw26I GTCTC 1 cut(s) 263
AoxI GGCC 1 cut(s) 352
ApeKI GCWGC 1 cut(s) 6
AspS9I GGNCC 2 cut(s) 124, 178
AvaII GGWCC 2 cut(s) 124, 178
BbsI GAAGAC 1 cut(s) 223
BbvI GCAGC 1 cut(s) 18
BccI CCATC 1 cut(s) 38
BciT130I CCWGG 1 cut(s) 324
BcoDI GTCTC 1 cut(s) 263
BfaI CTAG 2 cut(s) 21, 364
BisI GCNGC 2 cut(s) 7, 83
BlsI GCNGC 2 cut(s) 8, 84
Bme1390I CCNGG 1 cut(s) 324
Bme18I GGWCC 2 cut(s) 124, 178
BmeRI GACNNNNNGTC 1 cut(s) 49
BmgT120I GGNCC 2 cut(s) 124, 178
BmiI GGNNCC 1 cut(s) 126
BmrFI CCNGG 1 cut(s) 324
BmrI ACTGGG 1 cut(s) 127
BmuI ACTGGG 1 cut(s) 127
BpiI GAAGAC 1 cut(s) 223
BpmI CTGGAG 2 cut(s) 125, 238
BsaJI CCNNGG 1 cut(s) 323
BsaXI ACNNNNNCTCC 2 cut(s) 227, 257
Bsc4I CCNNNNNNNGG 1 cut(s) 329
Bse1I ACTGG 2 cut(s) 133, 255
BseBI CCWGG 1 cut(s) 324
BseDI CCNNGG 1 cut(s) 323
BseGI GGATG 2 cut(s) 91, 166
BseLI CCNNNNNNNGG 1 cut(s) 329
BseNI ACTGG 2 cut(s) 133, 255
BseRI GAGGAG 2 cut(s) 53, 253
BseXI GCAGC 1 cut(s) 18
BshFI GGCC 1 cut(s) 354
BslI CCNNNNNNNGG 1 cut(s) 329
BsmAI GTCTC 1 cut(s) 263
BsnI GGCC 1 cut(s) 354
BspACI CCGC 3 cut(s) 83, 238, 333
BspANI GGCC 1 cut(s) 354
BspLI GGNNCC 1 cut(s) 126
BsrI ACTGG 2 cut(s) 133, 255
BssECI CCNNGG 1 cut(s) 323
Bst2UI CCWGG 1 cut(s) 324
Bst6I CTCTTC 2 cut(s) 203, 334
BstC8I GCNNGC 1 cut(s) 26
BstF5I GGATG 2 cut(s) 91, 166
BstMAI GTCTC 1 cut(s) 263
BstNI CCWGG 1 cut(s) 324
BstSCI CCNGG 1 cut(s) 322
BstV1I GCAGC 1 cut(s) 18
BstV2I GAAGAC 1 cut(s) 223
BsuRI GGCC 1 cut(s) 354
BtsCI GGATG 2 cut(s) 91, 166
Cac8I GCNNGC 1 cut(s) 26
Cfr13I GGNCC 2 cut(s) 124, 178
CseI GACGC 1 cut(s) 286
Csp6I GTAC 1 cut(s) 136
CviAII CATG 1 cut(s) 350
CviJI RGCY 4 cut(s) 9, 28, 328, 354
CviKI_1 RGCY 4 cut(s) 9, 28, 328, 354
CviQI GTAC 1 cut(s) 136
DriI GACNNNNNGTC 1 cut(s) 49
Eam1104I CTCTTC 2 cut(s) 203, 334
Eam1105I GACNNNNNGTC 1 cut(s) 49
EarI CTCTTC 2 cut(s) 203, 334
EciI GGCGGA 1 cut(s) 348
Eco47I GGWCC 2 cut(s) 124, 178
EcoO109I RGGNCCY 1 cut(s) 178
EcoRII CCWGG 1 cut(s) 322
FaeI CATG 1 cut(s) 353
FaiI YATR 1 cut(s) 351
FatI CATG 1 cut(s) 349
Fnu4HI GCNGC 2 cut(s) 7, 83
FokI GGATG 2 cut(s) 78, 153
Fsp4HI GCNGC 2 cut(s) 7, 83
FspBI CTAG 2 cut(s) 21, 364
GluI GCNGC 2 cut(s) 7, 83
GsuI CTGGAG 2 cut(s) 125, 238
HaeIII GGCC 1 cut(s) 354
HgaI GACGC 1 cut(s) 286
Hin1II CATG 1 cut(s) 353
HinfI GANTC 4 cut(s) 44, 119, 219, 284
Hpy166II GTNNAC 1 cut(s) 54
Hpy188I TCNGA 6 cut(s) 13, 109, 124, 218, 247, 283
Hpy188III TCNNGA 2 cut(s) 142, 301
Hpy8I GTNNAC 1 cut(s) 54
Hpy99I CGWCG 1 cut(s) 52
HpyAV CCTTC 2 cut(s) 181, 217
Hsp92II CATG 1 cut(s) 353
LmnI GCTCC 1 cut(s) 14
LpnPI CCDG 7 cut(s) 129, 146, 155, 268, 307, 309, 336
Lsp1109I GCAGC 1 cut(s) 18
MaeI CTAG 2 cut(s) 21, 364
MboII GAAGA 6 cut(s) 26, 190, 214, 223, 303, 351
MluCI AATT 1 cut(s) 192
MlyI GAGTC 2 cut(s) 38, 113
MmeI TCCRAC 1 cut(s) 132
MspR9I CCNGG 1 cut(s) 324
MvaI CCWGG 1 cut(s) 324
NlaIII CATG 1 cut(s) 353
NlaIV GGNNCC 1 cut(s) 126
PfeI GAWTC 2 cut(s) 219, 284
PkrI GCNGC 2 cut(s) 8, 84
PleI GAGTC 2 cut(s) 38, 113
PpsI GAGTC 2 cut(s) 38, 113
PpuMI RGGWCCY 1 cut(s) 178
Psp5II RGGWCCY 1 cut(s) 178
Psp6I CCWGG 1 cut(s) 322
PspGI CCWGG 1 cut(s) 322
PspN4I GGNNCC 1 cut(s) 126
PspPI GGNCC 2 cut(s) 124, 178
PspPPI RGGWCCY 1 cut(s) 178
RsaI GTAC 1 cut(s) 137
RsaNI GTAC 1 cut(s) 136
SatI GCNGC 2 cut(s) 7, 83
Sau96I GGNCC 2 cut(s) 124, 178
SchI GAGTC 2 cut(s) 38, 113
ScrFI CCNGG 1 cut(s) 324
SetI ASST 8 cut(s) 11, 22, 118, 141, 166, 183, 209, 293
SinI GGWCC 2 cut(s) 124, 178
Sse9I AATT 1 cut(s) 192
SsiI CCGC 3 cut(s) 83, 238, 333
SspMI CTAG 2 cut(s) 21, 364
StyD4I CCNGG 1 cut(s) 322
TaqI TCGA 1 cut(s) 210
TasI AATT 1 cut(s) 192
TauI GCSGC 1 cut(s) 85
TfiI GAWTC 2 cut(s) 219, 284
TseI GCWGC 1 cut(s) 6
TspDTI ATGAA 2 cut(s) 214, 338
VpaK11BI GGWCC 2 cut(s) 124, 178
XspI CTAG 2 cut(s) 21, 364
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.