Rorug05G0507300

Belongs to the CTL (choline transporter-like) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0001533
Physical Location & Seq
Reverse (-)
68914431 .. 68916355
1925 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0507300.1

Sequence Viewer

Length: 333 bp
ATGGCCAAGCATCACCCCGATTTGATCATGTGCCGGAAGCAACCAGGGATTGCCATTGGGCGGCTCTGCGAGAAGTGTGATGGTAAGTGTGTCATATGCGACTCTTATGTGCGCCCTTGCACCCTTGTGAGGGTTTGTGATGAATGCAACTACGGATCATTTCAGGGTCGTTGTGTTATCTGTGGAGGAGTCGGGATTTCTGATGCTTACTATTGCAAAGAGTGTACACAGCAGGAGAAAGACAGGGACGGATGCCCAAAGATTGTCAATTTAGGAAGTGCGAAAACAGATCTCTTTTATGAACGGAAGAAATACGGTTTTAAGAAGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Choline_transpo

Protein Analysis

110

Amino Acids

12.41

Weight (kDa)

8.79

Isoelectric Point (pI)

38.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHF5 PF03660 1 - 104 6.9e-50 PHF5-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 61
AclWI GGATC 1 cut(s) 163
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 1 cut(s) 226
AfiI CCNNNNNNNGG 3 cut(s) 60, 129, 130
AjnI CCWGG 1 cut(s) 43
AleI CACNNNNGTG 1 cut(s) 125
AlwI GGATC 1 cut(s) 163
AoxI GGCC 1 cut(s) 3
AspLEI GCGC 1 cut(s) 114
AsuHPI GGTGA 1 cut(s) 5
BalI TGGCCA 1 cut(s) 5
BccI CCATC 1 cut(s) 74
BciT130I CCWGG 1 cut(s) 45
BclI TGATCA 1 cut(s) 24
BglII AGATCT 1 cut(s) 289
BisI GCNGC 1 cut(s) 62
BlsI GCNGC 1 cut(s) 63
Bme1390I CCNGG 1 cut(s) 45
BmrFI CCNGG 1 cut(s) 45
BmsI GCATC 3 cut(s) 19, 193, 242
BsaJI CCNNGG 1 cut(s) 44
Bsc4I CCNNNNNNNGG 3 cut(s) 60, 129, 130
BseBI CCWGG 1 cut(s) 45
BseDI CCNNGG 1 cut(s) 44
BseGI GGATG 1 cut(s) 257
BseLI CCNNNNNNNGG 3 cut(s) 60, 129, 130
BseRI GAGGAG 1 cut(s) 201
BshFI GGCC 1 cut(s) 5
BsiSI CCGG 1 cut(s) 34
BslFI GGGAC 1 cut(s) 260
BslI CCNNNNNNNGG 3 cut(s) 60, 129, 130
BsmFI GGGAC 1 cut(s) 260
BsmI GAATGC 1 cut(s) 149
BsnI GGCC 1 cut(s) 5
Bsp1407I TGTACA 1 cut(s) 224
Bsp143I GATC 3 cut(s) 24, 155, 289
BspACI CCGC 1 cut(s) 61
BspANI GGCC 1 cut(s) 5
BspPI GGATC 1 cut(s) 163
BsrGI TGTACA 1 cut(s) 224
BssECI CCNNGG 1 cut(s) 44
BssMI GATC 3 cut(s) 24, 155, 289
Bst2UI CCWGG 1 cut(s) 45
Bst4CI ACNGT 1 cut(s) 317
Bst6I CTCTTC 1 cut(s) 320
BstAUI TGTACA 1 cut(s) 224
BstF5I GGATG 1 cut(s) 257
BstHHI GCGC 1 cut(s) 114
BstKTI GATC 3 cut(s) 27, 158, 292
BstMBI GATC 3 cut(s) 24, 155, 289
BstNI CCWGG 1 cut(s) 45
BstSCI CCNGG 1 cut(s) 43
BstX2I RGATCY 1 cut(s) 289
BstYI RGATCY 1 cut(s) 289
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 1 cut(s) 257
CfoI GCGC 1 cut(s) 114
Csp6I GTAC 1 cut(s) 225
CviAII CATG 1 cut(s) 28
CviJI RGCY 2 cut(s) 5, 64
CviKI_1 RGCY 2 cut(s) 5, 64
CviQI GTAC 1 cut(s) 225
DpnI GATC 3 cut(s) 26, 157, 291
DpnII GATC 3 cut(s) 24, 155, 289
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 320
EarI CTCTTC 1 cut(s) 320
EcoRII CCWGG 1 cut(s) 43
FaeI CATG 1 cut(s) 31
FaiI YATR 5 cut(s) 29, 95, 97, 108, 300
FaqI GGGAC 1 cut(s) 260
FatI CATG 1 cut(s) 27
FauNDI CATATG 1 cut(s) 95
FbaI TGATCA 1 cut(s) 24
Fnu4HI GCNGC 1 cut(s) 62
FokI GGATG 1 cut(s) 264
Fsp4HI GCNGC 1 cut(s) 62
GlaI GCGC 1 cut(s) 113
GluI GCNGC 1 cut(s) 62
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 34
HhaI GCGC 1 cut(s) 114
Hin1II CATG 1 cut(s) 31
Hin6I GCGC 1 cut(s) 112
HinP1I GCGC 1 cut(s) 112
HinfI GANTC 2 cut(s) 101, 189
HpaII CCGG 1 cut(s) 34
HphI GGTGA 1 cut(s) 5
Hpy166II GTNNAC 2 cut(s) 225, 227
Hpy188I TCNGA 1 cut(s) 202
Hpy188III TCNNGA 1 cut(s) 193
Hpy8I GTNNAC 2 cut(s) 225, 227
HpyCH4III ACNGT 1 cut(s) 317
HpyCH4V TGCA 3 cut(s) 120, 147, 216
Hsp92II CATG 1 cut(s) 31
HspAI GCGC 1 cut(s) 112
Ksp22I TGATCA 1 cut(s) 24
Kzo9I GATC 3 cut(s) 24, 155, 289
LpnPI CCDG 6 cut(s) 30, 47, 57, 149, 218, 229
LweI GCATC 3 cut(s) 19, 193, 242
MalI GATC 3 cut(s) 26, 157, 291
MboI GATC 3 cut(s) 24, 155, 289
MboII GAAGA 1 cut(s) 319
MflI RGATCY 1 cut(s) 289
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 268
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 2 cut(s) 95, 198
MnlI CCTC 2 cut(s) 123, 179
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 321
MslI CAYNNNNRTG 1 cut(s) 125
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 34
MspR9I CCNGG 1 cut(s) 45
Mva1269I GAATGC 1 cut(s) 149
MvaI CCWGG 1 cut(s) 45
NdeI CATATG 1 cut(s) 95
NdeII GATC 3 cut(s) 24, 155, 289
NlaIII CATG 1 cut(s) 31
OliI CACNNNNGTG 1 cut(s) 125
PctI GAATGC 1 cut(s) 149
PkrI GCNGC 1 cut(s) 63
PleI GAGTC 2 cut(s) 95, 197
PpsI GAGTC 2 cut(s) 95, 197
Psp6I CCWGG 1 cut(s) 43
PspGI CCWGG 1 cut(s) 43
PsuI RGATCY 1 cut(s) 289
RsaI GTAC 1 cut(s) 226
RsaNI GTAC 1 cut(s) 225
RseI CAYNNNNRTG 1 cut(s) 125
SaqAI TTAA 1 cut(s) 321
SatI GCNGC 1 cut(s) 62
Sau3AI GATC 3 cut(s) 24, 155, 289
SchI GAGTC 2 cut(s) 95, 198
ScrFI CCNGG 1 cut(s) 45
SfaNI GCATC 3 cut(s) 19, 193, 242
SmiMI CAYNNNNRTG 1 cut(s) 125
Sse9I AATT 1 cut(s) 268
SsiI CCGC 1 cut(s) 61
StyD4I CCNGG 1 cut(s) 43
TaaI ACNGT 1 cut(s) 317
TasI AATT 1 cut(s) 268
TatI WGTACW 1 cut(s) 224
TauI GCSGC 1 cut(s) 64
Tru1I TTAA 1 cut(s) 321
Tru9I TTAA 1 cut(s) 321
TspDTI ATGAA 2 cut(s) 156, 315
TspGWI ACGGA 3 cut(s) 168, 264, 319
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.