RLG00000011871

26S proteasome non-atpase regulatory subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0001533
Physical Location & Seq
Forward (+)
13452536 .. 13454626
2091 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011871

Sequence Viewer

Length: 1413 bp
ATGGCTCTCATTCGCTTCCTCCTTCCCACATGTATGGTTTTCTTTTCATTGCTAATCGTCAATGCCTCTGCTACTAATTATGGCTATGGTCCAAAACCACCACAGGTTCAGAAACCAAAACCTCCACAGGTCCAGAAACCAAAACCACCACAGGTGGAGAAACCAAAACCAGATCAGTTGTATGGAGAGCTACTACCTCACAATCTCTTCGGCATTCAAGGGCTTGTTTTATGCAACTCTGGCTCTAAAGCCTTCCCAATTCAAGAATGGATGCGAAACAGTGATTACTCTCCCACCCGATTCCAAGCTCAAGCCGATGCTGTGAATCTCATCTGTGGTATCAAAACCCAGGCCAACCCGGAAAACACAGTTGGGGTGTTGACAATGGCGGGCAAAGGGGTTCGCGTGCTGACCACAACCACCTCTGACCTTGGCAAGATTTTGACTTGCACATATGGCCTTGAGATAGGGGGTGAGGTGAACATAGCAGCTGCAATCCAGGTAGCTCAGTTGGCTCTTAAGCATCGCCAAAATAAAAACCAACAACAAAGGATTGTAGTATTTGCTGGAAGTCCTGTCAAGAATGACAAGAAGGCATTGGAAATAATTGGGAAGAAACTGAAGAAGAACAGTGTTGCTCTTGACATTGTCGATTTTGGAGGAGAAGATGATGGAAAGGCGGAGAAGCTGGAGGCCCTTGTTTCTGCTGTTAATAATAATGGCACTAGTCACATAGTCCATGTACCTCCTGGTCTCCATGCTCTCTCTGATGTTCTTTTAAGTACACCAATATTAACTGGTGATGAAGAAGGAGGAGCTGGCTTTGCAGCCACAGCCGCAGCAGCTGGTATTGGTGGTTCTTCTGGCCATGACTTTGGAATAGATCCCAATATAGATCCCGAGCTTGCTCTCGCCCTTAGAATGTCAATGGAAGAGGAAAGGGCAAGGCAAGAAGCTGCTGCTGCCAAAAGAGCTGAGGAAGAAGCTGCTAGCAGACGAGGAAAAGGAGAGGAACGGCCATCCAAATCGGAGGATGTGACCATGACAGAAAGCGATGATGTTGAAATGGTTGATGAGAATGCCTTGCTAATGCAGGCTCTTGCAATGTCAATGAATAACTATGGCTCTGGCAGTTCTGCAGTTGGTAATGCTGAGATGTCAGAGGCAACTGGTGTGGATCAGAACTTGGCTCTAGCTCTTCAAATGTCCATGCAGGAAAGCGCAGGAGGGGCATCATCATCCGAGACAGTTGATGTGAGCAAGGTGTTGGAGGATCAGTCTTTTCTTTCGTCTATCATGGAATCTCTTTCGGGAGTTGACCCCAATGATCCTTCTGTGAAAGAGTTTCTTGCATCTGTGATTAATCAGTTTGAAAAGAATGAACAAGATCCACCTAATGACGAGAACAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000502 GO:0001101 GO:0001653 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0006974 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009408 GO:0009555 GO:0009628 GO:0009651 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009737 GO:0009743 GO:0009744 GO:0009791 GO:0009888 GO:0009908 GO:0009987 GO:0010015 GO:0010029 GO:0010033 GO:0010053 GO:0010054 GO:0010150 GO:0010498 GO:0016020 GO:0016043 GO:0016049 GO:0019538 GO:0019941 GO:0021700 GO:0022414 GO:0022607 GO:0022622 GO:0023052 GO:0030154 GO:0030163 GO:0031593 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0033993 GO:0034285 GO:0034622 GO:0035966 GO:0038023 GO:0040007 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043248 GO:0043632 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048364 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048468 GO:0048469 GO:0048528 GO:0048580 GO:0048588 GO:0048589 GO:0048608 GO:0048646 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051603 GO:0051716 GO:0051788 GO:0060089 GO:0060560 GO:0061458 GO:0065003 GO:0065007 GO:0071695 GO:0071704 GO:0071840 GO:0080147 GO:0090558 GO:0090567 GO:0090627 GO:0090693 GO:0090696 GO:0090697 GO:0090698 GO:0097305 GO:0099402 GO:0140030 GO:1900140 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902494 GO:1905368 GO:1905369 GO:1905392 GO:1905393 GO:2000026
KEGG Pathways
Metabolic & Signaling
ko03050 ko05169 map03050 map05169
Pfam Domains
Protein Families
UIM VWA_2

Protein Analysis

471

Amino Acids

50.02

Weight (kDa)

4.86

Isoelectric Point (pI)

36.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VWA_2 PF13519 89 - 190 4.3e-24 von Willebrand factor type A domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 405
AciI CCGC 3 cut(s) 389, 680, 837
AclWI GGATC 6 cut(s) 878, 890, 1185, 1281, 1322, 1382
AcoI YGGCCR 2 cut(s) 865, 1016
AcuI CTGAAG 1 cut(s) 641
AfaI GTAC 2 cut(s) 744, 784
AflII CTTAAG 1 cut(s) 518
AflIII ACRYGT 1 cut(s) 29
AgsI TTSAA 5 cut(s) 218, 263, 1064, 1202, 1373
AhlI ACTAGT 1 cut(s) 725
AjnI CCWGG 3 cut(s) 348, 498, 748
AjuI GAANNNNNNNTTGG 2 cut(s) 354, 386
Alw26I GTCTC 2 cut(s) 758, 1238
AlwI GGATC 6 cut(s) 878, 890, 1185, 1281, 1322, 1382
AlwNI CAGNNNCTG 1 cut(s) 845
Ama87I CYCGRG 1 cut(s) 899
AoxI GGCC 5 cut(s) 351, 457, 693, 865, 1016
ApeKI GCWGC 9 cut(s) 488, 491, 827, 839, 842, 956, 959, 962, 986
AseI ATTAAT 1 cut(s) 1362
AspLEI GCGC 1 cut(s) 1223
AspS9I GGNCC 3 cut(s) 89, 130, 694
AsuC2I CCSGG 1 cut(s) 359
AsuHPI GGTGA 3 cut(s) 485, 490, 812
AsuNHI GCTAGC 1 cut(s) 989
AvaI CYCGRG 1 cut(s) 899
AvaII GGWCC 2 cut(s) 89, 130
BalI TGGCCA 1 cut(s) 867
BbvCI CCTCAGC 1 cut(s) 975
BbvI GCAGC 9 cut(s) 478, 500, 839, 851, 854, 943, 946, 949, 973
BccI CCATC 2 cut(s) 665, 1027
BceAI ACGGC 1 cut(s) 1031
BciT130I CCWGG 3 cut(s) 350, 500, 750
BcnI CCSGG 1 cut(s) 359
BcoDI GTCTC 2 cut(s) 758, 1238
BcuI ACTAGT 1 cut(s) 725
BfaI CTAG 3 cut(s) 726, 990, 1193
BfmI CTRYAG 1 cut(s) 1137
BfrI CTTAAG 1 cut(s) 518
Bme1390I CCNGG 4 cut(s) 350, 359, 500, 750
Bme18I GGWCC 2 cut(s) 89, 130
BmeT110I CYCGRG 1 cut(s) 899
BmgT120I GGNCC 3 cut(s) 89, 130, 694
BmrFI CCNGG 4 cut(s) 350, 359, 500, 750
BmsI GCATC 5 cut(s) 261, 307, 532, 1241, 1361
BmtI GCTAGC 1 cut(s) 993
BpmI CTGGAG 1 cut(s) 710
Bpu10I CCTNAGC 1 cut(s) 975
BpuEI CTTGAG 2 cut(s) 294, 482
BpuMI CCSGG 1 cut(s) 359
BsaI GGTCTC 1 cut(s) 758
BsaJI CCNNGG 2 cut(s) 348, 430
BsaXI ACNNNNNCTCC 2 cut(s) 1262, 1292
Bse1I ACTGG 2 cut(s) 802, 1174
Bse3DI GCAATG 2 cut(s) 47, 1110
BseBI CCWGG 3 cut(s) 350, 500, 750
BseDI CCNNGG 2 cut(s) 348, 430
BseGI GGATG 4 cut(s) 276, 1019, 1039, 1238
BseMI GCAATG 2 cut(s) 47, 1110
BseMII CTCAG 3 cut(s) 521, 966, 1143
BseNI ACTGG 2 cut(s) 802, 1174
BseRI GAGGAG 2 cut(s) 675, 828
BseXI GCAGC 9 cut(s) 478, 500, 839, 851, 854, 943, 946, 949, 973
Bsh1236I CGCG 1 cut(s) 405
BshFI GGCC 5 cut(s) 353, 459, 695, 867, 1018
BsiHKCI CYCGRG 1 cut(s) 899
BsiSI CCGG 1 cut(s) 359
BsmAI GTCTC 2 cut(s) 758, 1238
BsmI GAATGC 2 cut(s) 213, 1084
BsnI GGCC 5 cut(s) 353, 459, 695, 867, 1018
Bso31I GGTCTC 1 cut(s) 758
BsoBI CYCGRG 1 cut(s) 899
Bsp143I GATC 7 cut(s) 172, 883, 895, 1177, 1273, 1327, 1387
BspACI CCGC 3 cut(s) 389, 680, 837
BspANI GGCC 5 cut(s) 353, 459, 695, 867, 1018
BspCNI CTCAG 3 cut(s) 520, 967, 1144
BspFNI CGCG 1 cut(s) 405
BspMAI CTGCAG 1 cut(s) 1141
BspOI GCTAGC 1 cut(s) 993
BspPI GGATC 6 cut(s) 878, 890, 1185, 1281, 1322, 1382
BspQI GCTCTTC 1 cut(s) 1203
BspTI CTTAAG 1 cut(s) 518
BspTNI GGTCTC 1 cut(s) 758
BsrDI GCAATG 2 cut(s) 47, 1110
BsrI ACTGG 2 cut(s) 802, 1174
BssECI CCNNGG 2 cut(s) 348, 430
BssMI GATC 7 cut(s) 172, 883, 895, 1177, 1273, 1327, 1387
BssT1I CCWWGG 1 cut(s) 430
Bst2UI CCWGG 3 cut(s) 350, 500, 750
Bst4CI ACNGT 4 cut(s) 281, 370, 632, 1249
Bst6I CTCTTC 3 cut(s) 212, 927, 1203
BstAFI CTTAAG 1 cut(s) 518
BstC8I GCNNGC 6 cut(s) 391, 407, 820, 906, 991, 1095
BstDEI CTNAG 4 cut(s) 507, 917, 975, 1152
BstF5I GGATG 4 cut(s) 276, 1019, 1039, 1238
BstFNI CGCG 1 cut(s) 405
BstHHI GCGC 1 cut(s) 1223
BstKTI GATC 7 cut(s) 175, 886, 898, 1180, 1276, 1330, 1390
BstMAI GTCTC 2 cut(s) 758, 1238
BstMBI GATC 7 cut(s) 172, 883, 895, 1177, 1273, 1327, 1387
BstNI CCWGG 3 cut(s) 350, 500, 750
BstNSI RCATGY 1 cut(s) 33
BstSCI CCNGG 4 cut(s) 348, 357, 498, 748
BstSFI CTRYAG 1 cut(s) 1137
BstUI CGCG 1 cut(s) 405
BstV1I GCAGC 9 cut(s) 478, 500, 839, 851, 854, 943, 946, 949, 973
BstX2I RGATCY 3 cut(s) 883, 895, 1387
BstXI CCANNNNNNTGG 2 cut(s) 34, 875
BstYI RGATCY 3 cut(s) 883, 895, 1387
BsuRI GGCC 5 cut(s) 353, 459, 695, 867, 1018
BtgZI GCGATG 2 cut(s) 509, 1068
BtsCI GGATG 4 cut(s) 276, 1019, 1039, 1238
BtsIMutI CAGTG 2 cut(s) 286, 637
Cac8I GCNNGC 6 cut(s) 391, 407, 820, 906, 991, 1095
CaiI CAGNNNCTG 1 cut(s) 845
CfoI GCGC 1 cut(s) 1223
Cfr13I GGNCC 3 cut(s) 89, 130, 694
Csp6I GTAC 2 cut(s) 743, 783
CspCI CAANNNNNGTGG 2 cut(s) 1155, 1190
CviAII CATG 7 cut(s) 30, 740, 758, 869, 1042, 1210, 1297
CviQI GTAC 2 cut(s) 743, 783
DdeI CTNAG 4 cut(s) 507, 917, 975, 1152
DpnI GATC 7 cut(s) 174, 885, 897, 1179, 1275, 1329, 1389
DpnII GATC 7 cut(s) 172, 883, 895, 1177, 1273, 1327, 1387
EaeI YGGCCR 2 cut(s) 865, 1016
Eam1104I CTCTTC 3 cut(s) 212, 927, 1203
EarI CTCTTC 3 cut(s) 212, 927, 1203
EciI GGCGGA 1 cut(s) 695
Eco130I CCWWGG 1 cut(s) 430
Eco31I GGTCTC 1 cut(s) 758
Eco47I GGWCC 2 cut(s) 89, 130
Eco57I CTGAAG 1 cut(s) 641
Eco88I CYCGRG 1 cut(s) 899
EcoO109I RGGNCCY 1 cut(s) 694
EcoRII CCWGG 3 cut(s) 348, 498, 748
EcoT14I CCWWGG 1 cut(s) 430
ErhI CCWWGG 1 cut(s) 430
FaeI CATG 7 cut(s) 33, 743, 761, 872, 1045, 1213, 1300
FalI AAGNNNNNCTT 2 cut(s) 1332, 1364
FatI CATG 7 cut(s) 29, 739, 757, 868, 1041, 1209, 1296
FauI CCCGC 1 cut(s) 382
FauNDI CATATG 1 cut(s) 454
FokI GGATG 4 cut(s) 283, 1006, 1046, 1225
FspBI CTAG 3 cut(s) 726, 990, 1193
GlaI GCGC 1 cut(s) 1222
GsuI CTGGAG 1 cut(s) 710
HaeIII GGCC 5 cut(s) 353, 459, 695, 867, 1018
HapII CCGG 1 cut(s) 359
HhaI GCGC 1 cut(s) 1223
Hin1II CATG 7 cut(s) 33, 743, 761, 872, 1045, 1213, 1300
Hin6I GCGC 1 cut(s) 1221
HinP1I GCGC 1 cut(s) 1221
HincII GTYRAC 2 cut(s) 381, 1318
HindII GTYRAC 2 cut(s) 381, 1318
HinfI GANTC 3 cut(s) 300, 325, 1301
HpaII CCGG 1 cut(s) 359
HphI GGTGA 3 cut(s) 485, 490, 812
Hpy166II GTNNAC 4 cut(s) 381, 481, 785, 1318
Hpy188I TCNGA 7 cut(s) 111, 427, 769, 1030, 1162, 1182, 1243
Hpy188III TCNNGA 6 cut(s) 133, 263, 580, 641, 899, 1311
Hpy8I GTNNAC 4 cut(s) 381, 481, 785, 1318
HpyAV CCTTC 5 cut(s) 32, 262, 586, 803, 1341
HpyCH4III ACNGT 4 cut(s) 281, 370, 632, 1249
HpyCH4V TGCA 9 cut(s) 234, 450, 494, 827, 1093, 1103, 1139, 1213, 1352
HpyF3I CTNAG 4 cut(s) 507, 917, 975, 1152
Hsp92II CATG 7 cut(s) 33, 743, 761, 872, 1045, 1213, 1300
HspAI GCGC 1 cut(s) 1221
Kzo9I GATC 7 cut(s) 172, 883, 895, 1177, 1273, 1327, 1387
LguI GCTCTTC 1 cut(s) 1203
LmnI GCTCC 1 cut(s) 815
Lsp1109I GCAGC 9 cut(s) 478, 500, 839, 851, 854, 943, 946, 949, 973
LweI GCATC 5 cut(s) 261, 307, 532, 1241, 1361
MaeI CTAG 3 cut(s) 726, 990, 1193
MaeIII GTNAC 2 cut(s) 728, 1036
MalI GATC 7 cut(s) 174, 885, 897, 1179, 1275, 1329, 1389
MboI GATC 7 cut(s) 172, 883, 895, 1177, 1273, 1327, 1387
MflI RGATCY 3 cut(s) 883, 895, 1387
MlsI TGGCCA 1 cut(s) 867
MluCI AATT 3 cut(s) 76, 258, 606
MluNI TGGCCA 1 cut(s) 867
MmeI TCCRAC 1 cut(s) 1248
Mox20I TGGCCA 1 cut(s) 867
MscI TGGCCA 1 cut(s) 867
MseI TTAA 5 cut(s) 519, 711, 779, 794, 1362
MslI CAYNNNNRTG 1 cut(s) 32
Msp20I TGGCCA 1 cut(s) 867
MspA1I CMGCKG 2 cut(s) 491, 845
MspCI CTTAAG 1 cut(s) 518
MspI CCGG 1 cut(s) 359
MspR9I CCNGG 4 cut(s) 350, 359, 500, 750
Mva1269I GAATGC 2 cut(s) 213, 1084
MvaI CCWGG 3 cut(s) 350, 500, 750
MvnI CGCG 1 cut(s) 405
NciI CCSGG 1 cut(s) 359
NdeI CATATG 1 cut(s) 454
NdeII GATC 7 cut(s) 172, 883, 895, 1177, 1273, 1327, 1387
NheI GCTAGC 1 cut(s) 989
NlaIII CATG 7 cut(s) 33, 743, 761, 872, 1045, 1213, 1300
NmuCI GTSAC 2 cut(s) 728, 1036
NspI RCATGY 1 cut(s) 33
PciI ACATGT 1 cut(s) 29
PciSI GCTCTTC 1 cut(s) 1203
PctI GAATGC 2 cut(s) 213, 1084
PfeI GAWTC 3 cut(s) 300, 325, 1301
PflFI GACNNNGTC 1 cut(s) 647
PscI ACATGT 1 cut(s) 29
PshBI ATTAAT 1 cut(s) 1362
Psp6I CCWGG 3 cut(s) 348, 498, 748
PspGI CCWGG 3 cut(s) 348, 498, 748
PspPI GGNCC 3 cut(s) 89, 130, 694
PsrI GAACNNNNNNTAC 2 cut(s) 841, 873
PstI CTGCAG 1 cut(s) 1141
PstNI CAGNNNCTG 1 cut(s) 845
PsuI RGATCY 3 cut(s) 883, 895, 1387
PsyI GACNNNGTC 1 cut(s) 647
PvuII CAGCTG 2 cut(s) 491, 845
RsaI GTAC 2 cut(s) 744, 784
RsaNI GTAC 2 cut(s) 743, 783
RseI CAYNNNNRTG 1 cut(s) 32
SapI GCTCTTC 1 cut(s) 1203
SaqAI TTAA 5 cut(s) 519, 711, 779, 794, 1362
Sau3AI GATC 7 cut(s) 172, 883, 895, 1177, 1273, 1327, 1387
Sau96I GGNCC 3 cut(s) 89, 130, 694
ScrFI CCNGG 4 cut(s) 350, 359, 500, 750
SfaNI GCATC 5 cut(s) 261, 307, 532, 1241, 1361
SfcI CTRYAG 1 cut(s) 1137
SinI GGWCC 2 cut(s) 89, 130
SmiMI CAYNNNNRTG 1 cut(s) 32
SmlI CTYRAG 3 cut(s) 309, 461, 518
SmoI CTYRAG 3 cut(s) 309, 461, 518
SpeI ACTAGT 1 cut(s) 725
Sse9I AATT 3 cut(s) 76, 258, 606
SsiI CCGC 3 cut(s) 389, 680, 837
SspI AATATT 1 cut(s) 792
SspMI CTAG 3 cut(s) 726, 990, 1193
StyD4I CCNGG 4 cut(s) 348, 357, 498, 748
StyI CCWWGG 1 cut(s) 430
TaaI ACNGT 4 cut(s) 281, 370, 632, 1249
TaqI TCGA 1 cut(s) 651
TasI AATT 3 cut(s) 76, 258, 606
TatI WGTACW 1 cut(s) 782
TauI GCSGC 1 cut(s) 839
TfiI GAWTC 3 cut(s) 300, 325, 1301
Tru1I TTAA 5 cut(s) 519, 711, 779, 794, 1362
Tru9I TTAA 5 cut(s) 519, 711, 779, 794, 1362
TscAI CASTG 2 cut(s) 286, 637
TseFI GTSAC 2 cut(s) 728, 1036
TseI GCWGC 9 cut(s) 488, 491, 827, 839, 842, 956, 959, 962, 986
Tsp45I GTSAC 2 cut(s) 728, 1036
TspDTI ATGAA 4 cut(s) 36, 819, 1127, 1395
TspRI CASTG 2 cut(s) 286, 637
Tth111I GACNNNGTC 1 cut(s) 647
Vha464I CTTAAG 1 cut(s) 518
VpaK11BI GGWCC 2 cut(s) 89, 130
VspI ATTAAT 1 cut(s) 1362
XceI RCATGY 1 cut(s) 33
XcmI CCANNNNNNNNNTGG 2 cut(s) 264, 746
XspI CTAG 3 cut(s) 726, 990, 1193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.