Prupe.7G170300_v2.0.a1

26S proteasome non-atpase regulatory subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0001533
Physical Location & Seq
Forward (+)
17232882 .. 17238181
5300 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G170300.1

Sequence Viewer

Length: 1218 bp
ATGGTGCTCGAGGCGACAATGATCTGCATTGATAATTCGGAATGGATGCGAAACGGTGATTATGCTCCTTCGAGGTTTCAAGCTCAGGCCGATGCTGTCAATCTGATTTGTGGAGCTAAAACCCAGTCTAATCCAGAGAATACAGTAGGAGTTCTCACCATGGCAGGGAAAGGTGTTCGCGTTTTGGTCACTCCTACTAGTGATCTTGGCAAGATTCTGGCATGCATGCATGGTTTAGAAATAGGTGGTGAGATGAACCTGGCAGCTGGCATTCAGGTGGCTCAATTGGCCCTCAAACATCGCCAGAACAAGAAACAGCAACAAAGGATTATTGTGTTTGCTGGAAGTACTGTCAAACATGACAAAAAGTTTTTGGAGATAATCGGAAGGAGATTAAAGAAGAACAGTGTAGCCCTTGATATCGTCAATTTTGGTGAAGAAGATGAGGAGAAGTCAGAGAAGCTAGAATCCCTGTTTAAGACTGTGAACAATAATGACACCAGCCACATTGTTCATGTTCCACCTGGTCCAAGTGCTCTTTCTGATGTACTTATAAGTACACCCATCTTTACCGGGGATGGGGAAGGTGGGAGTGGTTTTGCAGCGGCAGCAGCAGCAGCTGCCGCTGGTGGTGTCTCTGGTTTTGATTTCGGTGTAGATCCAAACCTGGATCCTGAGCTTGCCCTTGCTCTTAGAGTTTCAATGGAAGAAGAGAGGGCCAGACAAGAAGCAGCTGCTAAAAAGGCTGCTGAGGATGCTTCCAAACAGGAAAAAGGAGGGGAAGCACAATCCAGCTCACAAGATGCAACTATGACGGAGCGTGCCAGTGCTGGAACGTCTGAAGCTGATAATAAGAGTAATGATTTCATGGATGATGAGAATGCTCTGCTACAACAGGCCCTTGCAATGTCGATGGATGAACCCGCTTCCAGCCATGAGATGCGAGATGCAGATATGTCTGAGGCAACTGGAGAGGATCCAGAGTTGGCTCTAGCTCTTCAGTTGTCTGTGCAGGAGAGTGCAAAAGATTCTGGTAGCCAGAAAGATATGAGTAAACTATTGGCTGACCAATCTTTTGTGTCTTCCATCCTTGCCTCGCTTCCAGGGGTTGACCCAAATGATCCTTCAGTTAAAGATTTGCTTGCTTCCATGCAAAACCAGTCAGAGCCTGATCAGAAGAAGAATGAAGACAAAGCACCGAAAGAGGAGGAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000502 GO:0001101 GO:0001653 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0006974 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009408 GO:0009555 GO:0009628 GO:0009651 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009737 GO:0009743 GO:0009744 GO:0009791 GO:0009888 GO:0009908 GO:0009987 GO:0010015 GO:0010029 GO:0010033 GO:0010053 GO:0010054 GO:0010150 GO:0010498 GO:0016020 GO:0016043 GO:0016049 GO:0019538 GO:0019941 GO:0021700 GO:0022414 GO:0022607 GO:0022622 GO:0023052 GO:0030154 GO:0030163 GO:0031593 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0033993 GO:0034285 GO:0034622 GO:0035966 GO:0038023 GO:0040007 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043248 GO:0043632 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048364 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048468 GO:0048469 GO:0048528 GO:0048580 GO:0048588 GO:0048589 GO:0048608 GO:0048646 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051603 GO:0051716 GO:0051788 GO:0060089 GO:0060560 GO:0061458 GO:0065003 GO:0065007 GO:0071695 GO:0071704 GO:0071840 GO:0080147 GO:0090558 GO:0090567 GO:0090627 GO:0090693 GO:0090696 GO:0090697 GO:0090698 GO:0097305 GO:0099402 GO:0140030 GO:1900140 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902494 GO:1905368 GO:1905369 GO:1905392 GO:1905393 GO:2000026
KEGG Pathways
Metabolic & Signaling
ko03050 ko05169 map03050 map05169
Pfam Domains
Protein Families
UIM VWA_2

Protein Analysis

406

Amino Acids

43.11

Weight (kDa)

4.64

Isoelectric Point (pI)

46.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 554
AccII CGCG 1 cut(s) 180
AciI CCGC 3 cut(s) 605, 624, 924
AclWI GGATC 6 cut(s) 653, 665, 678, 971, 984, 1115
AcuI CTGAAG 3 cut(s) 861, 983, 1110
AfaI GTAC 3 cut(s) 349, 549, 559
AfiI CCNNNNNNNGG 2 cut(s) 165, 579
AgsI TTSAA 2 cut(s) 80, 702
AhlI ACTAGT 1 cut(s) 197
AjnI CCWGG 4 cut(s) 258, 523, 666, 1102
AjuI GAANNNNNNNTTGG 4 cut(s) 523, 555, 1108, 1140
Alw21I GWGCWC 2 cut(s) 9, 538
Alw26I GTCTC 1 cut(s) 640
AlwI GGATC 6 cut(s) 653, 665, 678, 971, 984, 1115
AlwNI CAGNNNCTG 2 cut(s) 620, 1169
Ama87I CYCGRG 1 cut(s) 8
AoxI GGCC 4 cut(s) 87, 288, 717, 897
ArsI GACNNNNNNTTYG 2 cut(s) 1058, 1090
AspS9I GGNCC 4 cut(s) 289, 527, 717, 898
AsuC2I CCSGG 1 cut(s) 574
AsuHPI GGTGA 4 cut(s) 68, 148, 260, 446
AvaI CYCGRG 1 cut(s) 8
AvaII GGWCC 1 cut(s) 527
BamHI GGATCC 2 cut(s) 670, 976
BbsI GAAGAC 2 cut(s) 1074, 1194
Bbv12I GWGCWC 2 cut(s) 9, 538
BbvCI CCTCAGC 1 cut(s) 750
BccI CCATC 4 cut(s) 572, 572, 907, 1094
BciT130I CCWGG 4 cut(s) 260, 525, 668, 1104
BclI TGATCA 1 cut(s) 1171
BcnI CCSGG 1 cut(s) 574
BcoDI GTCTC 1 cut(s) 640
BcuI ACTAGT 1 cut(s) 197
BfaI CTAG 3 cut(s) 198, 464, 992
BmcAI AGTACT 1 cut(s) 349
Bme1390I CCNGG 5 cut(s) 260, 525, 574, 668, 1104
Bme18I GGWCC 1 cut(s) 527
BmeT110I CYCGRG 1 cut(s) 8
BmgT120I GGNCC 4 cut(s) 289, 527, 717, 898
BmiI GGNNCC 2 cut(s) 672, 978
BmrFI CCNGG 5 cut(s) 260, 525, 574, 668, 1104
BmrI ACTGGG 1 cut(s) 118
BmsI GCATC 6 cut(s) 36, 82, 745, 793, 930, 937
BmuI ACTGGG 1 cut(s) 118
BpiI GAAGAC 2 cut(s) 1074, 1194
BpmI CTGGAG 1 cut(s) 990
Bpu10I CCTNAGC 3 cut(s) 84, 675, 750
BpuMI CCSGG 1 cut(s) 574
BsaJI CCNNGG 3 cut(s) 159, 573, 1103
Bsc4I CCNNNNNNNGG 2 cut(s) 165, 579
Bse1I ACTGG 4 cut(s) 124, 825, 973, 1159
Bse3DI GCAATG 1 cut(s) 912
BseBI CCWGG 4 cut(s) 260, 525, 668, 1104
BseDI CCNNGG 3 cut(s) 159, 573, 1103
BseGI GGATG 6 cut(s) 51, 583, 760, 877, 922, 1086
BseLI CCNNNNNNNGG 2 cut(s) 165, 579
BseMI GCAATG 1 cut(s) 912
BseMII CTCAG 4 cut(s) 98, 666, 741, 951
BseNI ACTGG 4 cut(s) 124, 825, 973, 1159
BseRI GAGGAG 1 cut(s) 461
BsgI GTGCAG 1 cut(s) 1031
Bsh1236I CGCG 1 cut(s) 180
BshFI GGCC 4 cut(s) 89, 290, 719, 899
BsiHKAI GWGCWC 2 cut(s) 9, 538
BsiHKCI CYCGRG 1 cut(s) 8
BsiSI CCGG 1 cut(s) 573
BslI CCNNNNNNNGG 2 cut(s) 165, 579
BsmAI GTCTC 1 cut(s) 640
BsmI GAATGC 2 cut(s) 270, 886
BsnI GGCC 4 cut(s) 89, 290, 719, 899
BsoBI CYCGRG 1 cut(s) 8
Bsp1286I GDGCHC 2 cut(s) 9, 538
Bsp143I GATC 7 cut(s) 21, 202, 658, 670, 976, 1120, 1171
Bsp19I CCATGG 1 cut(s) 159
BspACI CCGC 3 cut(s) 605, 624, 924
BspANI GGCC 4 cut(s) 89, 290, 719, 899
BspCNI CTCAG 4 cut(s) 97, 667, 742, 952
BspFNI CGCG 1 cut(s) 180
BspLI GGNNCC 2 cut(s) 672, 978
BspPI GGATC 6 cut(s) 653, 665, 678, 971, 984, 1115
BspQI GCTCTTC 1 cut(s) 1002
BsrDI GCAATG 1 cut(s) 912
BsrI ACTGG 4 cut(s) 124, 825, 973, 1159
BssECI CCNNGG 3 cut(s) 159, 573, 1103
BssMI GATC 7 cut(s) 21, 202, 658, 670, 976, 1120, 1171
BssT1I CCWWGG 1 cut(s) 159
Bst2UI CCWGG 4 cut(s) 260, 525, 668, 1104
Bst4CI ACNGT 5 cut(s) 56, 145, 352, 407, 484
Bst6I CTCTTC 2 cut(s) 705, 1002
BstAPI GCANNNNNTGC 1 cut(s) 620
BstC8I GCNNGC 6 cut(s) 223, 227, 268, 681, 822, 1143
BstDEI CTNAG 5 cut(s) 84, 675, 692, 750, 960
BstDSI CCRYGG 1 cut(s) 159
BstF5I GGATG 6 cut(s) 51, 583, 760, 877, 922, 1086
BstFNI CGCG 1 cut(s) 180
BstKTI GATC 7 cut(s) 24, 205, 661, 673, 979, 1123, 1174
BstMAI GTCTC 1 cut(s) 640
BstMBI GATC 7 cut(s) 21, 202, 658, 670, 976, 1120, 1171
BstMWI GCNNNNNNNGC 9 cut(s) 287, 608, 611, 614, 617, 620, 623, 743, 755
BstNI CCWGG 4 cut(s) 260, 525, 668, 1104
BstNSI RCATGY 2 cut(s) 225, 229
BstSCI CCNGG 5 cut(s) 258, 523, 572, 666, 1102
BstUI CGCG 1 cut(s) 180
BstV2I GAAGAC 2 cut(s) 1074, 1194
BstX2I RGATCY 3 cut(s) 658, 670, 976
BstYI RGATCY 3 cut(s) 658, 670, 976
BsuRI GGCC 4 cut(s) 89, 290, 719, 899
BtgI CCRYGG 1 cut(s) 159
BtgZI GCGATG 1 cut(s) 284
BtsCI GGATG 6 cut(s) 51, 583, 760, 877, 922, 1086
BtsIMutI CAGTG 2 cut(s) 412, 832
Cac8I GCNNGC 6 cut(s) 223, 227, 268, 681, 822, 1143
CaiI CAGNNNCTG 2 cut(s) 620, 1169
Cfr13I GGNCC 4 cut(s) 289, 527, 717, 898
CsiI ACCWGGT 1 cut(s) 523
Csp6I GTAC 3 cut(s) 348, 548, 558
CviAII CATG 9 cut(s) 160, 222, 226, 230, 359, 515, 868, 935, 1150
CviQI GTAC 3 cut(s) 348, 548, 558
DdeI CTNAG 5 cut(s) 84, 675, 692, 750, 960
DpnI GATC 7 cut(s) 23, 204, 660, 672, 978, 1122, 1173
DpnII GATC 7 cut(s) 21, 202, 658, 670, 976, 1120, 1171
Eam1104I CTCTTC 2 cut(s) 705, 1002
EarI CTCTTC 2 cut(s) 705, 1002
Eco130I CCWWGG 1 cut(s) 159
Eco32I GATATC 1 cut(s) 421
Eco47I GGWCC 1 cut(s) 527
Eco57I CTGAAG 3 cut(s) 861, 983, 1110
Eco88I CYCGRG 1 cut(s) 8
EcoO109I RGGNCCY 1 cut(s) 898
EcoRII CCWGG 4 cut(s) 258, 523, 666, 1102
EcoRV GATATC 1 cut(s) 421
EcoT14I CCWWGG 1 cut(s) 159
EcoT22I ATGCAT 2 cut(s) 227, 231
ErhI CCWWGG 1 cut(s) 159
FaeI CATG 9 cut(s) 163, 225, 229, 233, 362, 518, 871, 938, 1153
FalI AAGNNNNNCTT 2 cut(s) 1125, 1157
FatI CATG 9 cut(s) 159, 221, 225, 229, 358, 514, 867, 934, 1149
FauI CCCGC 1 cut(s) 931
FbaI TGATCA 1 cut(s) 1171
FokI GGATG 6 cut(s) 58, 590, 767, 884, 929, 1073
FspBI CTAG 3 cut(s) 198, 464, 992
GsuI CTGGAG 1 cut(s) 990
HaeIII GGCC 4 cut(s) 89, 290, 719, 899
HapII CCGG 1 cut(s) 573
Hin1II CATG 9 cut(s) 163, 225, 229, 233, 362, 518, 871, 938, 1153
HincII GTYRAC 1 cut(s) 1111
HindII GTYRAC 1 cut(s) 1111
HinfI GANTC 3 cut(s) 214, 467, 1028
HpaII CCGG 1 cut(s) 573
HphI GGTGA 4 cut(s) 68, 148, 260, 446
Hpy166II GTNNAC 4 cut(s) 487, 560, 1055, 1111
Hpy188I TCNGA 9 cut(s) 40, 105, 386, 457, 544, 841, 961, 1165, 1176
Hpy188III TCNNGA 3 cut(s) 134, 674, 980
Hpy8I GTNNAC 4 cut(s) 487, 560, 1055, 1111
HpyAV CCTTC 4 cut(s) 78, 381, 578, 1134
HpyCH4III ACNGT 5 cut(s) 56, 145, 352, 407, 484
HpyCH4IV ACGT 1 cut(s) 836
HpyF10VI GCNNNNNNNGC 9 cut(s) 287, 608, 611, 614, 617, 620, 623, 743, 755
HpyF3I CTNAG 5 cut(s) 84, 675, 692, 750, 960
HpySE526I ACGT 1 cut(s) 836
Hsp92II CATG 9 cut(s) 163, 225, 229, 233, 362, 518, 871, 938, 1153
Ksp22I TGATCA 1 cut(s) 1171
Kzo9I GATC 7 cut(s) 21, 202, 658, 670, 976, 1120, 1171
LguI GCTCTTC 1 cut(s) 1002
LmnI GCTCC 3 cut(s) 70, 113, 817
LweI GCATC 6 cut(s) 36, 82, 745, 793, 930, 937
MabI ACCWGGT 1 cut(s) 523
MaeI CTAG 3 cut(s) 198, 464, 992
MaeII ACGT 1 cut(s) 836
MaeIII GTNAC 1 cut(s) 187
MalI GATC 7 cut(s) 23, 204, 660, 672, 978, 1122, 1173
MboI GATC 7 cut(s) 21, 202, 658, 670, 976, 1120, 1171
MfeI CAATTG 1 cut(s) 284
MflI RGATCY 3 cut(s) 658, 670, 976
MhlI GDGCHC 2 cut(s) 9, 538
MluCI AATT 3 cut(s) 34, 284, 427
Mph1103I ATGCAT 2 cut(s) 227, 231
MseI TTAA 3 cut(s) 395, 477, 1131
MslI CAYNNNNRTG 1 cut(s) 275
MspA1I CMGCKG 5 cut(s) 266, 605, 620, 626, 734
MspI CCGG 1 cut(s) 573
MspR9I CCNGG 5 cut(s) 260, 525, 574, 668, 1104
MunI CAATTG 1 cut(s) 284
Mva1269I GAATGC 2 cut(s) 270, 886
MvaI CCWGG 4 cut(s) 260, 525, 668, 1104
MvnI CGCG 1 cut(s) 180
MwoI GCNNNNNNNGC 9 cut(s) 287, 608, 611, 614, 617, 620, 623, 743, 755
NciI CCSGG 1 cut(s) 574
NcoI CCATGG 1 cut(s) 159
NdeII GATC 7 cut(s) 21, 202, 658, 670, 976, 1120, 1171
NlaIII CATG 9 cut(s) 163, 225, 229, 233, 362, 518, 871, 938, 1153
NlaIV GGNNCC 2 cut(s) 672, 978
NmuCI GTSAC 1 cut(s) 187
NsiI ATGCAT 2 cut(s) 227, 231
NspI RCATGY 2 cut(s) 225, 229
PaeI GCATGC 2 cut(s) 225, 229
PaeR7I CTCGAG 1 cut(s) 8
PciSI GCTCTTC 1 cut(s) 1002
PctI GAATGC 2 cut(s) 270, 886
PfeI GAWTC 3 cut(s) 214, 467, 1028
PsiI TTATAA 1 cut(s) 554
Psp6I CCWGG 4 cut(s) 258, 523, 666, 1102
PspGI CCWGG 4 cut(s) 258, 523, 666, 1102
PspN4I GGNNCC 2 cut(s) 672, 978
PspPI GGNCC 4 cut(s) 289, 527, 717, 898
PspXI VCTCGAGB 1 cut(s) 8
PstNI CAGNNNCTG 2 cut(s) 620, 1169
PsuI RGATCY 3 cut(s) 658, 670, 976
PvuII CAGCTG 3 cut(s) 266, 620, 734
RsaI GTAC 3 cut(s) 349, 549, 559
RsaNI GTAC 3 cut(s) 348, 548, 558
RseI CAYNNNNRTG 1 cut(s) 275
SapI GCTCTTC 1 cut(s) 1002
SaqAI TTAA 3 cut(s) 395, 477, 1131
Sau3AI GATC 7 cut(s) 21, 202, 658, 670, 976, 1120, 1171
Sau96I GGNCC 4 cut(s) 289, 527, 717, 898
ScaI AGTACT 1 cut(s) 349
ScrFI CCNGG 5 cut(s) 260, 525, 574, 668, 1104
SduI GDGCHC 2 cut(s) 9, 538
SexAI ACCWGGT 1 cut(s) 523
SfaNI GCATC 6 cut(s) 36, 82, 745, 793, 930, 937
Sfr274I CTCGAG 1 cut(s) 8
SinI GGWCC 1 cut(s) 527
SlaI CTCGAG 1 cut(s) 8
SmiMI CAYNNNNRTG 1 cut(s) 275
SmlI CTYRAG 1 cut(s) 8
SmoI CTYRAG 1 cut(s) 8
SpeI ACTAGT 1 cut(s) 197
SphI GCATGC 2 cut(s) 225, 229
Sse9I AATT 3 cut(s) 34, 284, 427
SsiI CCGC 3 cut(s) 605, 624, 924
SspMI CTAG 3 cut(s) 198, 464, 992
StyD4I CCNGG 5 cut(s) 258, 523, 572, 666, 1102
StyI CCWWGG 1 cut(s) 159
TaaI ACNGT 5 cut(s) 56, 145, 352, 407, 484
TaiI ACGT 1 cut(s) 839
TaqI TCGA 3 cut(s) 9, 71, 911
TasI AATT 3 cut(s) 34, 284, 427
TatI WGTACW 3 cut(s) 347, 547, 557
TauI GCSGC 2 cut(s) 608, 626
TfiI GAWTC 3 cut(s) 214, 467, 1028
Tru1I TTAA 3 cut(s) 395, 477, 1131
Tru9I TTAA 3 cut(s) 395, 477, 1131
TscAI CASTG 2 cut(s) 412, 832
TseFI GTSAC 1 cut(s) 187
Tsp45I GTSAC 1 cut(s) 187
TspDTI ATGAA 5 cut(s) 269, 503, 856, 933, 1200
TspGWI ACGGA 1 cut(s) 830
TspRI CASTG 2 cut(s) 412, 832
VpaK11BI GGWCC 1 cut(s) 527
XceI RCATGY 2 cut(s) 225, 229
XhoI CTCGAG 1 cut(s) 8
XspI CTAG 3 cut(s) 198, 464, 992
ZrmI AGTACT 1 cut(s) 349
Zsp2I ATGCAT 2 cut(s) 227, 231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.