FvH4_2g01440

26S proteasome non-atpase regulatory subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0001533
Physical Location & Seq
Reverse (-)
1320271 .. 1324087
3817 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g01440.t2

Sequence Viewer

Length: 1215 bp
ATGGTTCTCGAGGCGACTATGATATGCGTCGACAACTCAGAATGGATGCGAAACGGTGATTACTCACCTTCTCGATTCCAAGCTCAAGCTGATGCTATCAATCTCATCTGTGGTGCCAAAACCCAGGCCAATCCGGAAAACACAGTTGGGGTGTTGACAATGGCGGGCAAAGGGGTTCGTGTATTGGCTACACCCACTTCTGATCTCGGCAGGATTTTGGCTTGCATGCACGGTCTGGAAATGGGGGGAGAGATGAACATAACATCTGCGATCCAGGTTGCTCAGTTGGCTCTTAAGCATCGACAAAACAAAAATCAACAGCAAAGGATCATAGTTTTTGCTGGAAGTCCTGTCAAATATGAAAAGAAGGTTTTAGAAATGATTGGGAAGAAATTGAAGAAGAACAGTGTTGCTCTTGATATCATCGATTTTGGAGAAGATGATGATGATGATGGAAAGCCAGAGAAGCTGGAGGCCCTTCTTTCTGCTGTTAACAATAATGACAGCAGTCATTTAGTACATGTTCCTCCTGGTCCAGATGCTCTCTCTGATGTTCTTATAAGTTCACCTGTATTCACCGGTGATGGAGAAGGAGGAAGTGGCTTTGCAGTGGCGGCTGCAGCAGCTACTGCTGCTGCTATCGGTGGTTCTTCCGGCTATGATTTTGATGTAGATCCTAACATAGATCCGGAGCTTGCTCTTGCTCTGAGAGTTTCTATGGAAGAGGAAAGGGCAAGGCAAGAAGCTGCTGCCAAAAGATCGGCTGACGAAGCTAGTAGACAAGGAGAGGAACCACCATCCAAATCTGAGGATGTAATTATGACAGAAAGTGGTGATGTTTCAGTTCCGAACGAGGATAAGAAACCTACTAATGATATGGTTGACGAGAACGACTTGCTAAAGCAGGCCCTTGCAATGTCAATGAATATGTCTGGATCTGGTAATTCAGCAGGTGATGCTGAGATGTCGGAGGCAACTAGTGCAGATCCGGAGCTGGCTCTAGCTCTTCAAATGTCCATGCAGGACAGTGCAGGTGAACCATCATCCCAGTCAGATGTGAACAAGGTGTTGGAGGACCAGTCCTTTCTTTCATCTATCCTTGAATCTCTTCCAGGAGTTGACCCTAATGATCCTTCAGTGAAAGAGCTTCTTGCATCTCTGAAGAATCAGTCCAAAGAAAAGGATGAAGGAGGTCCATCAAAGGAGGACAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000502 GO:0001101 GO:0001653 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0006974 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009408 GO:0009555 GO:0009628 GO:0009651 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009737 GO:0009743 GO:0009744 GO:0009791 GO:0009888 GO:0009908 GO:0009987 GO:0010015 GO:0010029 GO:0010033 GO:0010053 GO:0010054 GO:0010150 GO:0010498 GO:0016020 GO:0016043 GO:0016049 GO:0019538 GO:0019941 GO:0021700 GO:0022414 GO:0022607 GO:0022622 GO:0023052 GO:0030154 GO:0030163 GO:0031593 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0033993 GO:0034285 GO:0034622 GO:0035966 GO:0038023 GO:0040007 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043248 GO:0043632 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048364 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048468 GO:0048469 GO:0048528 GO:0048580 GO:0048588 GO:0048589 GO:0048608 GO:0048646 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051603 GO:0051716 GO:0051788 GO:0060089 GO:0060560 GO:0061458 GO:0065003 GO:0065007 GO:0071695 GO:0071704 GO:0071840 GO:0080147 GO:0090558 GO:0090567 GO:0090627 GO:0090693 GO:0090696 GO:0090697 GO:0090698 GO:0097305 GO:0099402 GO:0140030 GO:1900140 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902494 GO:1905368 GO:1905369 GO:1905392 GO:1905393 GO:2000026
KEGG Pathways
Metabolic & Signaling
ko03050 ko05169 map03050 map05169
Pfam Domains
Protein Families
UIM VWA_2

Protein Analysis

405

Amino Acids

42.74

Weight (kDa)

4.41

Isoelectric Point (pI)

48.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VWA_2 PF13519 3 - 62 2.6e-12 von Willebrand factor type A domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 560
AarI CACCTGC 2 cut(s) 941, 1022
Acc36I ACCTGC 2 cut(s) 941, 1022
AccB1I GGYRCC 1 cut(s) 113
AccI GTMKAC 2 cut(s) 30, 778
AccIII TCCGGA 3 cut(s) 133, 688, 988
AciI CCGC 2 cut(s) 164, 614
AclWI GGATC 7 cut(s) 265, 335, 668, 680, 943, 980, 1124
AcuI CTGAAG 2 cut(s) 1119, 1181
AfaI GTAC 1 cut(s) 519
AflII CTTAAG 1 cut(s) 293
AflIII ACRYGT 1 cut(s) 520
AgeI ACCGGT 1 cut(s) 578
AgsI TTSAA 3 cut(s) 397, 1010, 1103
AhlI ACTAGT 1 cut(s) 977
AjnI CCWGG 4 cut(s) 123, 273, 529, 1111
AjuI GAANNNNNNNTTGG 4 cut(s) 129, 161, 1052, 1084
AlwI GGATC 7 cut(s) 265, 335, 668, 680, 943, 980, 1124
AlwNI CAGNNNCTG 1 cut(s) 629
Ama87I CYCGRG 1 cut(s) 8
Aor13HI TCCGGA 3 cut(s) 133, 688, 988
AoxI GGCC 3 cut(s) 126, 474, 906
ApeKI GCWGC 7 cut(s) 617, 620, 623, 632, 635, 746, 749
AsiGI ACCGGT 1 cut(s) 578
Asp700I GAANNNNTTC 1 cut(s) 1107
AspS9I GGNCC 5 cut(s) 475, 533, 907, 1075, 1193
AsuHPI GGTGA 8 cut(s) 57, 68, 558, 568, 593, 845, 965, 1046
AvaI CYCGRG 1 cut(s) 8
AvaII GGWCC 3 cut(s) 533, 1075, 1193
BanI GGYRCC 1 cut(s) 113
BbvI GCAGC 7 cut(s) 604, 619, 622, 632, 635, 733, 736
BccI CCATC 5 cut(s) 446, 578, 805, 1048, 1204
BciT130I CCWGG 4 cut(s) 125, 275, 531, 1113
BcuI ACTAGT 1 cut(s) 977
BfaI CTAG 3 cut(s) 774, 978, 1001
BfmI CTRYAG 1 cut(s) 618
BfrI CTTAAG 1 cut(s) 293
BfuAI ACCTGC 2 cut(s) 941, 1022
BisI GCNGC 8 cut(s) 615, 618, 621, 624, 633, 636, 747, 750
BlsI GCNGC 8 cut(s) 616, 619, 622, 625, 634, 637, 748, 751
Bme1390I CCNGG 4 cut(s) 125, 275, 531, 1113
Bme18I GGWCC 3 cut(s) 533, 1075, 1193
BmeT110I CYCGRG 1 cut(s) 8
BmgT120I GGNCC 5 cut(s) 475, 533, 907, 1075, 1193
BmiI GGNNCC 2 cut(s) 115, 792
BmrFI CCNGG 4 cut(s) 125, 275, 531, 1113
BmrI ACTGGG 1 cut(s) 1042
BmsI GCATC 6 cut(s) 36, 82, 307, 529, 946, 1163
BmuI ACTGGG 1 cut(s) 1042
BoxI GACNNNNGTC 1 cut(s) 507
BpmI CTGGAG 1 cut(s) 491
BpuEI CTTGAG 1 cut(s) 69
Bsa29I ATCGAT 1 cut(s) 426
BsaBI GATNNNNATC 1 cut(s) 672
BsaJI CCNNGG 1 cut(s) 123
BsaWI WCCGGW 4 cut(s) 133, 578, 688, 988
BsaXI ACNNNNNCTCC 3 cut(s) 1064, 1094, 1196
Bse118I RCCGGY 1 cut(s) 578
Bse1I ACTGG 2 cut(s) 1048, 1078
Bse3DI GCAATG 1 cut(s) 921
Bse8I GATNNNNATC 1 cut(s) 672
BseAI TCCGGA 3 cut(s) 133, 688, 988
BseBI CCWGG 4 cut(s) 125, 275, 531, 1113
BseCI ATCGAT 1 cut(s) 426
BseDI CCNNGG 1 cut(s) 123
BseGI GGATG 5 cut(s) 51, 797, 817, 1043, 1189
BseJI GATNNNNATC 1 cut(s) 672
BseMI GCAATG 1 cut(s) 921
BseMII CTCAG 5 cut(s) 51, 296, 698, 798, 951
BseNI ACTGG 2 cut(s) 1048, 1078
BseXI GCAGC 7 cut(s) 604, 619, 622, 632, 635, 733, 736
BsgI GTGCAG 2 cut(s) 1002, 1050
BshFI GGCC 3 cut(s) 128, 476, 908
BshNI GGYRCC 1 cut(s) 113
BshTI ACCGGT 1 cut(s) 578
BshVI ATCGAT 1 cut(s) 426
BsiHKCI CYCGRG 1 cut(s) 8
BsiSI CCGG 5 cut(s) 134, 579, 654, 689, 989
BsnI GGCC 3 cut(s) 128, 476, 908
BsoBI CYCGRG 1 cut(s) 8
Bsp13I TCCGGA 3 cut(s) 133, 688, 988
Bsp143I GATC 9 cut(s) 202, 270, 327, 673, 685, 758, 935, 985, 1129
BspACI CCGC 2 cut(s) 164, 614
BspANI GGCC 3 cut(s) 128, 476, 908
BspCNI CTCAG 5 cut(s) 50, 295, 699, 799, 952
BspDI ATCGAT 1 cut(s) 426
BspEI TCCGGA 3 cut(s) 133, 688, 988
BspLI GGNNCC 2 cut(s) 115, 792
BspMAI CTGCAG 1 cut(s) 622
BspMI ACCTGC 2 cut(s) 941, 1022
BspPI GGATC 7 cut(s) 265, 335, 668, 680, 943, 980, 1124
BspQI GCTCTTC 1 cut(s) 1011
BspT107I GGYRCC 1 cut(s) 113
BspTI CTTAAG 1 cut(s) 293
BsrDI GCAATG 1 cut(s) 921
BsrFI RCCGGY 1 cut(s) 578
BsrI ACTGG 2 cut(s) 1048, 1078
BssAI RCCGGY 1 cut(s) 578
BssECI CCNNGG 1 cut(s) 123
BssMI GATC 9 cut(s) 202, 270, 327, 673, 685, 758, 935, 985, 1129
Bst2UI CCWGG 4 cut(s) 125, 275, 531, 1113
Bst4CI ACNGT 5 cut(s) 56, 145, 233, 407, 1028
Bst6I CTCTTC 3 cut(s) 717, 1011, 1113
BstAFI CTTAAG 1 cut(s) 293
BstAPI GCANNNNNTGC 3 cut(s) 629, 956, 980
BstC8I GCNNGC 6 cut(s) 166, 223, 227, 696, 906, 996
BstDEI CTNAG 5 cut(s) 37, 282, 707, 807, 960
BstF5I GGATG 5 cut(s) 51, 797, 817, 1043, 1189
BstKTI GATC 9 cut(s) 205, 273, 330, 676, 688, 761, 938, 988, 1132
BstMBI GATC 9 cut(s) 202, 270, 327, 673, 685, 758, 935, 985, 1129
BstNI CCWGG 4 cut(s) 125, 275, 531, 1113
BstNSI RCATGY 2 cut(s) 229, 524
BstPAI GACNNNNGTC 1 cut(s) 507
BstSCI CCNGG 4 cut(s) 123, 273, 529, 1111
BstSFI CTRYAG 1 cut(s) 618
BstV1I GCAGC 7 cut(s) 604, 619, 622, 632, 635, 733, 736
BstX2I RGATCY 4 cut(s) 673, 685, 935, 985
BstYI RGATCY 4 cut(s) 673, 685, 935, 985
Bsu15I ATCGAT 1 cut(s) 426
BsuRI GGCC 3 cut(s) 128, 476, 908
BsuTUI ATCGAT 1 cut(s) 426
BtsCI GGATG 5 cut(s) 51, 797, 817, 1043, 1189
BtsI GCAGTG 1 cut(s) 615
BtsIMutI CAGTG 4 cut(s) 412, 615, 1033, 1143
BveI ACCTGC 2 cut(s) 941, 1022
Cac8I GCNNGC 6 cut(s) 166, 223, 227, 696, 906, 996
CaiI CAGNNNCTG 1 cut(s) 629
Cfr10I RCCGGY 1 cut(s) 578
Cfr13I GGNCC 5 cut(s) 475, 533, 907, 1075, 1193
ClaI ATCGAT 1 cut(s) 426
CseI GACGC 1 cut(s) 16
Csp6I GTAC 1 cut(s) 518
CspAI ACCGGT 1 cut(s) 578
CviAII CATG 3 cut(s) 226, 521, 1018
CviQI GTAC 1 cut(s) 518
DdeI CTNAG 5 cut(s) 37, 282, 707, 807, 960
DpnI GATC 9 cut(s) 204, 272, 329, 675, 687, 760, 937, 987, 1131
DpnII GATC 9 cut(s) 202, 270, 327, 673, 685, 758, 935, 985, 1129
Eam1104I CTCTTC 3 cut(s) 717, 1011, 1113
EarI CTCTTC 3 cut(s) 717, 1011, 1113
Eco32I GATATC 1 cut(s) 421
Eco47I GGWCC 3 cut(s) 533, 1075, 1193
Eco57I CTGAAG 2 cut(s) 1119, 1181
Eco88I CYCGRG 1 cut(s) 8
EcoO109I RGGNCCY 2 cut(s) 475, 907
EcoRII CCWGG 4 cut(s) 123, 273, 529, 1111
EcoRV GATATC 1 cut(s) 421
FaeI CATG 3 cut(s) 229, 524, 1021
FalI AAGNNNNNCTT 2 cut(s) 1134, 1166
FatI CATG 3 cut(s) 225, 520, 1017
FauI CCCGC 1 cut(s) 157
FblI GTMKAC 2 cut(s) 30, 778
Fnu4HI GCNGC 8 cut(s) 615, 618, 621, 624, 633, 636, 747, 750
FokI GGATG 5 cut(s) 58, 784, 824, 1030, 1196
Fsp4HI GCNGC 8 cut(s) 615, 618, 621, 624, 633, 636, 747, 750
FspBI CTAG 3 cut(s) 774, 978, 1001
GluI GCNGC 8 cut(s) 615, 618, 621, 624, 633, 636, 747, 750
GsuI CTGGAG 1 cut(s) 491
HaeIII GGCC 3 cut(s) 128, 476, 908
HapII CCGG 5 cut(s) 134, 579, 654, 689, 989
HgaI GACGC 1 cut(s) 16
Hin1II CATG 3 cut(s) 229, 524, 1021
HincII GTYRAC 5 cut(s) 31, 156, 493, 883, 1120
HindII GTYRAC 5 cut(s) 31, 156, 493, 883, 1120
HinfI GANTC 3 cut(s) 75, 1103, 1165
HpaI GTTAAC 1 cut(s) 493
HpaII CCGG 5 cut(s) 134, 579, 654, 689, 989
HphI GGTGA 8 cut(s) 57, 68, 558, 568, 593, 845, 965, 1046
Hpy166II GTNNAC 9 cut(s) 31, 156, 493, 566, 779, 883, 1037, 1060, 1120
Hpy188I TCNGA 9 cut(s) 40, 202, 550, 708, 808, 849, 970, 1054, 1161
Hpy188III TCNNGA 9 cut(s) 8, 72, 134, 236, 416, 536, 689, 933, 989
Hpy8I GTNNAC 9 cut(s) 31, 156, 493, 566, 779, 883, 1037, 1060, 1120
Hpy99I CGWCG 1 cut(s) 32
HpyAV CCTTC 6 cut(s) 78, 361, 488, 584, 1143, 1181
HpyCH4III ACNGT 5 cut(s) 56, 145, 233, 407, 1028
HpyCH4V TGCA 9 cut(s) 225, 229, 608, 620, 914, 983, 1021, 1031, 1154
HpyF3I CTNAG 5 cut(s) 37, 282, 707, 807, 960
Hsp92II CATG 3 cut(s) 229, 524, 1021
Kpn2I TCCGGA 3 cut(s) 133, 688, 988
KspAI GTTAAC 1 cut(s) 493
Kzo9I GATC 9 cut(s) 202, 270, 327, 673, 685, 758, 935, 985, 1129
LguI GCTCTTC 1 cut(s) 1011
LmnI GCTCC 2 cut(s) 691, 991
Lsp1109I GCAGC 7 cut(s) 604, 619, 622, 632, 635, 733, 736
LweI GCATC 6 cut(s) 36, 82, 307, 529, 946, 1163
MaeI CTAG 3 cut(s) 774, 978, 1001
MalI GATC 9 cut(s) 204, 272, 329, 675, 687, 760, 937, 987, 1131
MboI GATC 9 cut(s) 202, 270, 327, 673, 685, 758, 935, 985, 1129
MboII GAAGA 9 cut(s) 400, 409, 412, 449, 642, 734, 998, 1100, 1174
MflI RGATCY 4 cut(s) 673, 685, 935, 985
MluCI AATT 3 cut(s) 392, 816, 943
MmeI TCCRAC 2 cut(s) 948, 1050
MroI TCCGGA 3 cut(s) 133, 688, 988
MroXI GAANNNNTTC 1 cut(s) 1107
MseI TTAA 2 cut(s) 294, 492
MspCI CTTAAG 1 cut(s) 293
MspI CCGG 5 cut(s) 134, 579, 654, 689, 989
MspR9I CCNGG 4 cut(s) 125, 275, 531, 1113
MvaI CCWGG 4 cut(s) 125, 275, 531, 1113
NdeII GATC 9 cut(s) 202, 270, 327, 673, 685, 758, 935, 985, 1129
NlaIII CATG 3 cut(s) 229, 524, 1021
NlaIV GGNNCC 2 cut(s) 115, 792
NmeAIII GCCGAG 1 cut(s) 186
NspI RCATGY 2 cut(s) 229, 524
PaeI GCATGC 1 cut(s) 229
PaeR7I CTCGAG 1 cut(s) 8
PaqCI CACCTGC 2 cut(s) 941, 1022
PciI ACATGT 1 cut(s) 520
PciSI GCTCTTC 1 cut(s) 1011
PdmI GAANNNNTTC 1 cut(s) 1107
PfeI GAWTC 3 cut(s) 75, 1103, 1165
PfoI TCCNGGA 1 cut(s) 1111
PinAI ACCGGT 1 cut(s) 578
PkrI GCNGC 8 cut(s) 616, 619, 622, 625, 634, 637, 748, 751
PscI ACATGT 1 cut(s) 520
PshAI GACNNNNGTC 1 cut(s) 507
PsiI TTATAA 1 cut(s) 560
Psp6I CCWGG 4 cut(s) 123, 273, 529, 1111
PspGI CCWGG 4 cut(s) 123, 273, 529, 1111
PspN4I GGNNCC 2 cut(s) 115, 792
PspPI GGNCC 5 cut(s) 475, 533, 907, 1075, 1193
PstI CTGCAG 1 cut(s) 622
PstNI CAGNNNCTG 1 cut(s) 629
PsuI RGATCY 4 cut(s) 673, 685, 935, 985
RsaI GTAC 1 cut(s) 519
RsaNI GTAC 1 cut(s) 518
SalI GTCGAC 1 cut(s) 29
SapI GCTCTTC 1 cut(s) 1011
SaqAI TTAA 2 cut(s) 294, 492
SatI GCNGC 8 cut(s) 615, 618, 621, 624, 633, 636, 747, 750
Sau3AI GATC 9 cut(s) 202, 270, 327, 673, 685, 758, 935, 985, 1129
Sau96I GGNCC 5 cut(s) 475, 533, 907, 1075, 1193
ScrFI CCNGG 4 cut(s) 125, 275, 531, 1113
SfaNI GCATC 6 cut(s) 36, 82, 307, 529, 946, 1163
SfcI CTRYAG 1 cut(s) 618
Sfr274I CTCGAG 1 cut(s) 8
SgrAI CRCCGGYG 1 cut(s) 578
SinI GGWCC 3 cut(s) 533, 1075, 1193
SlaI CTCGAG 1 cut(s) 8
SmlI CTYRAG 3 cut(s) 8, 84, 293
SmoI CTYRAG 3 cut(s) 8, 84, 293
SpeI ACTAGT 1 cut(s) 977
SphI GCATGC 1 cut(s) 229
Sse9I AATT 3 cut(s) 392, 816, 943
SsiI CCGC 2 cut(s) 164, 614
SspMI CTAG 3 cut(s) 774, 978, 1001
StyD4I CCNGG 4 cut(s) 123, 273, 529, 1111
TaaI ACNGT 5 cut(s) 56, 145, 233, 407, 1028
TaqI TCGA 5 cut(s) 9, 30, 73, 301, 426
TasI AATT 3 cut(s) 392, 816, 943
TatI WGTACW 1 cut(s) 517
TauI GCSGC 1 cut(s) 617
TfiI GAWTC 3 cut(s) 75, 1103, 1165
Tru1I TTAA 2 cut(s) 294, 492
Tru9I TTAA 2 cut(s) 294, 492
TscAI CASTG 4 cut(s) 412, 615, 1033, 1143
TseI GCWGC 7 cut(s) 617, 620, 623, 632, 635, 746, 749
TspDTI ATGAA 5 cut(s) 269, 375, 938, 1080, 1200
TspRI CASTG 4 cut(s) 412, 615, 1033, 1143
Vha464I CTTAAG 1 cut(s) 293
VpaK11BI GGWCC 3 cut(s) 533, 1075, 1193
XceI RCATGY 2 cut(s) 229, 524
XhoI CTCGAG 1 cut(s) 8
XmiI GTMKAC 2 cut(s) 30, 778
XmnI GAANNNNTTC 1 cut(s) 1107
XspI CTAG 3 cut(s) 774, 978, 1001
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.