Rh2CG131200

26S proteasome non-atpase regulatory subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0001533
Physical Location & Seq
Reverse (-)
11696520 .. 11701663
5144 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG131200.1

Sequence Viewer

Length: 1059 bp
ATGGTGCTCGAGGCGACAATGATCTGCATTGATAATTCGGAGTGGATGCGGAACGGCGACTACGCTCCTTCGAGATTTCAAGCTCAGGCCGACGCCGTCAATCTGATTTGTGGAGCTAAAACCCAGTCTAATCCGGAGAATACAGTAGGAGTTCTCACCATGGCAGGGAAACGTGTTCGCGTTTTGGTAACTCCTACTAGTGATCTTGGCAAGATTTTGGCGTGCATGCACGGTTTAGAAATAGGTGGTGAGATGAACCTGGCTGCTGGCATTCAGGTGGCTCAATTGGCCCTCAAACATCGCCAGAATAAGAAGCAGCAGCAAAGGATTATAGTCTTTGCTGGAAGTGTTGTTAAACATGAAAAGAAGACTTTGGAGATGATTGGAAGAAAGTTAAAGAAGAACAGTGTAGCCCTTGATATCATTAATTTTGGTGAAGAAGATGAGGAAAAGTCAGAGAAGCTAGAAGCACTTCTTGCTGCTGTGAACAATAATGACACCAGCCACATTGTTCATGTTCCGGCTGGTCCAAGTGCTCTTTCTGATGTACTCATAAGTACACCTATCTTCACCGGAGATGGAGAAGGTGGGAGTGGTTTTGCAGCAGCAGCAGCAGCTGCTGCAGCTGGTGGTGTATCTGGTTTTGATTTCGGTGTGGATCCAAACCTGGATCCTGAACTTGCCCTTGCTCTTAGAGTATCAATGGAGGAGGAGAGGGCCAGACAAGAAGCAGCTGCTAAAAAGGCTGCTGAGGATTCTTCCAAACAGGAGAAAGGAGGGGAAGAACAATCCAGCTCACAAGATGCAACTATGACAGAGCGTGCCAGTGCTGTAACTTCTGAAGCTGAGAATAAGAGTGTTGATTTCATGGATGATGACAACGCTCTGCTACAGCAGGCCCTTGCAATGTCGATGGATGAGCCTGCCTCCAGCCATGATTTGCGAGACACTGACATGTCTGAGGTAGTTGCAGATGATCCCGAGTTGGCTCTAGGTGAGTTCTCAACTTTGTACGAGCAATACTGCATTCGTTTACTGGCGCATTCTCACGGTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000502 GO:0001101 GO:0001653 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0006974 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009408 GO:0009555 GO:0009628 GO:0009651 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009737 GO:0009743 GO:0009744 GO:0009791 GO:0009888 GO:0009908 GO:0009987 GO:0010015 GO:0010029 GO:0010033 GO:0010053 GO:0010054 GO:0010150 GO:0010498 GO:0016020 GO:0016043 GO:0016049 GO:0019538 GO:0019941 GO:0021700 GO:0022414 GO:0022607 GO:0022622 GO:0023052 GO:0030154 GO:0030163 GO:0031593 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0033993 GO:0034285 GO:0034622 GO:0035966 GO:0038023 GO:0040007 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043248 GO:0043632 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048364 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048468 GO:0048469 GO:0048528 GO:0048580 GO:0048588 GO:0048589 GO:0048608 GO:0048646 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051603 GO:0051716 GO:0051788 GO:0060089 GO:0060560 GO:0061458 GO:0065003 GO:0065007 GO:0071695 GO:0071704 GO:0071840 GO:0080147 GO:0090558 GO:0090567 GO:0090627 GO:0090693 GO:0090696 GO:0090697 GO:0090698 GO:0097305 GO:0099402 GO:0140030 GO:1900140 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902494 GO:1905368 GO:1905369 GO:1905392 GO:1905393 GO:2000026
KEGG Pathways
Metabolic & Signaling
ko03050 ko05169 map03050 map05169
Pfam Domains
Protein Families
UIM VWA_2

Protein Analysis

352

Amino Acids

37.58

Weight (kDa)

4.69

Isoelectric Point (pI)

42.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VWA_2 PF13519 6 - 115 1.9e-32 von Willebrand factor type A domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 180
AccIII TCCGGA 1 cut(s) 133
AciI CCGC 1 cut(s) 49
AclWI GGATC 5 cut(s) 653, 665, 666, 678, 971
AcuI CTGAAG 1 cut(s) 861
AcyI GRCGYC 1 cut(s) 93
AfaI GTAC 3 cut(s) 549, 559, 1013
AfiI CCNNNNNNNGG 1 cut(s) 165
AflIII ACRYGT 2 cut(s) 172, 954
AgsI TTSAA 1 cut(s) 80
AhlI ACTAGT 1 cut(s) 197
AjnI CCWGG 2 cut(s) 258, 666
AjuI GAANNNNNNNTTGG 2 cut(s) 523, 555
AluBI AGCT 8 cut(s) 83, 116, 463, 617, 626, 734, 795, 845
AluI AGCT 8 cut(s) 83, 116, 463, 617, 626, 734, 795, 845
Alw21I GWGCWC 2 cut(s) 9, 538
Alw26I GTCTC 1 cut(s) 939
AlwI GGATC 5 cut(s) 653, 665, 666, 678, 971
AlwNI CAGNNNCTG 2 cut(s) 617, 620
Ama87I CYCGRG 2 cut(s) 8, 980
Aor13HI TCCGGA 1 cut(s) 133
AoxI GGCC 4 cut(s) 87, 288, 717, 897
AseI ATTAAT 1 cut(s) 426
Asp700I GAANNNNTTC 1 cut(s) 471
AspLEI GCGC 1 cut(s) 1042
AspS9I GGNCC 4 cut(s) 289, 527, 717, 898
AsuHPI GGTGA 5 cut(s) 148, 260, 446, 562, 1007
AvaI CYCGRG 2 cut(s) 8, 980
AvaII GGWCC 1 cut(s) 527
BamHI GGATCC 2 cut(s) 658, 670
BbsI GAAGAC 1 cut(s) 374
Bbv12I GWGCWC 2 cut(s) 9, 538
BbvCI CCTCAGC 1 cut(s) 750
BccI CCATC 2 cut(s) 572, 907
BceAI ACGGC 2 cut(s) 70, 80
BciT130I CCWGG 2 cut(s) 260, 668
BcoDI GTCTC 1 cut(s) 939
BcuI ACTAGT 1 cut(s) 197
BfaI CTAG 3 cut(s) 198, 464, 992
BfmI CTRYAG 2 cut(s) 621, 890
Bme1390I CCNGG 2 cut(s) 260, 668
Bme18I GGWCC 1 cut(s) 527
BmeT110I CYCGRG 2 cut(s) 8, 980
BmgT120I GGNCC 4 cut(s) 289, 527, 717, 898
BmiI GGNNCC 2 cut(s) 660, 672
BmrFI CCNGG 2 cut(s) 260, 668
BmrI ACTGGG 1 cut(s) 118
BmsI GCATC 2 cut(s) 36, 793
BmuI ACTGGG 1 cut(s) 118
BpiI GAAGAC 1 cut(s) 374
BplI GAGNNNNNCTC 2 cut(s) 911, 943
BpmI CTGGAG 1 cut(s) 913
Bpu10I CCTNAGC 2 cut(s) 84, 750
BsaHI GRCGYC 1 cut(s) 93
BsaJI CCNNGG 1 cut(s) 159
BsaWI WCCGGW 2 cut(s) 133, 572
Bsc4I CCNNNNNNNGG 1 cut(s) 165
Bse1I ACTGG 3 cut(s) 124, 825, 1041
Bse3DI GCAATG 1 cut(s) 912
BseAI TCCGGA 1 cut(s) 133
BseBI CCWGG 2 cut(s) 260, 668
BseDI CCNNGG 1 cut(s) 159
BseGI GGATG 3 cut(s) 51, 877, 922
BseLI CCNNNNNNNGG 1 cut(s) 165
BseMI GCAATG 1 cut(s) 912
BseMII CTCAG 4 cut(s) 98, 741, 837, 951
BseNI ACTGG 3 cut(s) 124, 825, 1041
BseRI GAGGAG 2 cut(s) 722, 725
Bsh1236I CGCG 1 cut(s) 180
BshFI GGCC 4 cut(s) 89, 290, 719, 899
BsiHKAI GWGCWC 2 cut(s) 9, 538
BsiHKCI CYCGRG 2 cut(s) 8, 980
BsiSI CCGG 3 cut(s) 134, 521, 573
BslI CCNNNNNNNGG 1 cut(s) 165
BsmAI GTCTC 1 cut(s) 939
BsmI GAATGC 3 cut(s) 270, 1026, 1042
BsnI GGCC 4 cut(s) 89, 290, 719, 899
BsoBI CYCGRG 2 cut(s) 8, 980
Bsp1286I GDGCHC 2 cut(s) 9, 538
Bsp13I TCCGGA 1 cut(s) 133
Bsp143I GATC 5 cut(s) 21, 202, 658, 670, 976
Bsp19I CCATGG 1 cut(s) 159
BspACI CCGC 1 cut(s) 49
BspANI GGCC 4 cut(s) 89, 290, 719, 899
BspCNI CTCAG 4 cut(s) 97, 742, 838, 952
BspEI TCCGGA 1 cut(s) 133
BspFNI CGCG 1 cut(s) 180
BspLI GGNNCC 2 cut(s) 660, 672
BspMAI CTGCAG 1 cut(s) 625
BspPI GGATC 5 cut(s) 653, 665, 666, 678, 971
BsrDI GCAATG 1 cut(s) 912
BsrI ACTGG 3 cut(s) 124, 825, 1041
BssECI CCNNGG 1 cut(s) 159
BssMI GATC 5 cut(s) 21, 202, 658, 670, 976
BssNI GRCGYC 1 cut(s) 93
BssT1I CCWWGG 1 cut(s) 159
Bst2UI CCWGG 2 cut(s) 260, 668
Bst4CI ACNGT 4 cut(s) 145, 233, 407, 1052
BstACI GRCGYC 1 cut(s) 93
BstAPI GCANNNNNTGC 3 cut(s) 476, 617, 620
BstC8I GCNNGC 6 cut(s) 223, 227, 268, 822, 897, 924
BstDEI CTNAG 5 cut(s) 84, 692, 750, 846, 960
BstDSI CCRYGG 1 cut(s) 159
BstF5I GGATG 3 cut(s) 51, 877, 922
BstFNI CGCG 1 cut(s) 180
BstHHI GCGC 1 cut(s) 1042
BstKTI GATC 5 cut(s) 24, 205, 661, 673, 979
BstMAI GTCTC 1 cut(s) 939
BstMBI GATC 5 cut(s) 21, 202, 658, 670, 976
BstMWI GCNNNNNNNGC 9 cut(s) 287, 476, 608, 611, 614, 617, 620, 623, 743
BstNI CCWGG 2 cut(s) 260, 668
BstNSI RCATGY 2 cut(s) 229, 958
BstSCI CCNGG 2 cut(s) 258, 666
BstSFI CTRYAG 2 cut(s) 621, 890
BstUI CGCG 1 cut(s) 180
BstV2I GAAGAC 1 cut(s) 374
BstX2I RGATCY 2 cut(s) 658, 670
BstYI RGATCY 2 cut(s) 658, 670
BsuRI GGCC 4 cut(s) 89, 290, 719, 899
BtgI CCRYGG 1 cut(s) 159
BtgZI GCGATG 1 cut(s) 284
BtsCI GGATG 3 cut(s) 51, 877, 922
BtsIMutI CAGTG 3 cut(s) 412, 832, 948
Cac8I GCNNGC 6 cut(s) 223, 227, 268, 822, 897, 924
CaiI CAGNNNCTG 2 cut(s) 617, 620
CfoI GCGC 1 cut(s) 1042
Cfr13I GGNCC 4 cut(s) 289, 527, 717, 898
CseI GACGC 1 cut(s) 101
Csp6I GTAC 3 cut(s) 548, 558, 1012
CviAII CATG 7 cut(s) 160, 226, 359, 515, 868, 935, 955
CviQI GTAC 3 cut(s) 548, 558, 1012
DdeI CTNAG 5 cut(s) 84, 692, 750, 846, 960
DpnI GATC 5 cut(s) 23, 204, 660, 672, 978
DpnII GATC 5 cut(s) 21, 202, 658, 670, 976
Eco130I CCWWGG 1 cut(s) 159
Eco32I GATATC 1 cut(s) 421
Eco47I GGWCC 1 cut(s) 527
Eco57I CTGAAG 1 cut(s) 861
Eco88I CYCGRG 2 cut(s) 8, 980
EcoO109I RGGNCCY 1 cut(s) 898
EcoRII CCWGG 2 cut(s) 258, 666
EcoRV GATATC 1 cut(s) 421
EcoT14I CCWWGG 1 cut(s) 159
ErhI CCWWGG 1 cut(s) 159
FaeI CATG 7 cut(s) 163, 229, 362, 518, 871, 938, 958
FalI AAGNNNNNCTT 2 cut(s) 459, 491
FatI CATG 7 cut(s) 159, 225, 358, 514, 867, 934, 954
FokI GGATG 3 cut(s) 58, 884, 929
FspBI CTAG 3 cut(s) 198, 464, 992
GlaI GCGC 1 cut(s) 1041
GsuI CTGGAG 1 cut(s) 913
HaeIII GGCC 4 cut(s) 89, 290, 719, 899
HapII CCGG 3 cut(s) 134, 521, 573
HgaI GACGC 1 cut(s) 101
HhaI GCGC 1 cut(s) 1042
Hin1I GRCGYC 1 cut(s) 93
Hin1II CATG 7 cut(s) 163, 229, 362, 518, 871, 938, 958
Hin6I GCGC 1 cut(s) 1040
HinP1I GCGC 1 cut(s) 1040
HinfI GANTC 1 cut(s) 755
HpaII CCGG 3 cut(s) 134, 521, 573
HphI GGTGA 5 cut(s) 148, 260, 446, 562, 1007
Hpy166II GTNNAC 3 cut(s) 487, 560, 1034
Hpy188I TCNGA 6 cut(s) 40, 105, 457, 544, 841, 961
Hpy188III TCNNGA 4 cut(s) 72, 134, 674, 980
Hpy8I GTNNAC 3 cut(s) 487, 560, 1034
Hpy99I CGWCG 1 cut(s) 95
HpyAV CCTTC 2 cut(s) 78, 578
HpyCH4III ACNGT 4 cut(s) 145, 233, 407, 1052
HpyCH4IV ACGT 1 cut(s) 172
HpyCH4V TGCA 9 cut(s) 27, 225, 229, 602, 623, 806, 905, 971, 1026
HpyF10VI GCNNNNNNNGC 9 cut(s) 287, 476, 608, 611, 614, 617, 620, 623, 743
HpyF3I CTNAG 5 cut(s) 84, 692, 750, 846, 960
HpySE526I ACGT 1 cut(s) 172
Hsp92I GRCGYC 1 cut(s) 93
Hsp92II CATG 7 cut(s) 163, 229, 362, 518, 871, 938, 958
HspAI GCGC 1 cut(s) 1040
Kpn2I TCCGGA 1 cut(s) 133
Kzo9I GATC 5 cut(s) 21, 202, 658, 670, 976
LmnI GCTCC 2 cut(s) 70, 113
LweI GCATC 2 cut(s) 36, 793
MaeI CTAG 3 cut(s) 198, 464, 992
MaeII ACGT 1 cut(s) 172
MaeIII GTNAC 2 cut(s) 187, 832
MalI GATC 5 cut(s) 23, 204, 660, 672, 978
MboI GATC 5 cut(s) 21, 202, 658, 670, 976
MboII GAAGA 8 cut(s) 379, 399, 412, 449, 452, 559, 750, 794
MfeI CAATTG 1 cut(s) 284
MflI RGATCY 2 cut(s) 658, 670
MhlI GDGCHC 2 cut(s) 9, 538
MluCI AATT 3 cut(s) 34, 284, 427
MroI TCCGGA 1 cut(s) 133
MroXI GAANNNNTTC 1 cut(s) 471
MseI TTAA 3 cut(s) 354, 395, 426
MslI CAYNNNNRTG 2 cut(s) 275, 953
MspA1I CMGCKG 3 cut(s) 617, 626, 734
MspI CCGG 3 cut(s) 134, 521, 573
MspR9I CCNGG 2 cut(s) 260, 668
MunI CAATTG 1 cut(s) 284
Mva1269I GAATGC 3 cut(s) 270, 1026, 1042
MvaI CCWGG 2 cut(s) 260, 668
MvnI CGCG 1 cut(s) 180
MwoI GCNNNNNNNGC 9 cut(s) 287, 476, 608, 611, 614, 617, 620, 623, 743
NcoI CCATGG 1 cut(s) 159
NdeII GATC 5 cut(s) 21, 202, 658, 670, 976
NlaIII CATG 7 cut(s) 163, 229, 362, 518, 871, 938, 958
NlaIV GGNNCC 2 cut(s) 660, 672
NspI RCATGY 2 cut(s) 229, 958
PaeI GCATGC 1 cut(s) 229
PaeR7I CTCGAG 1 cut(s) 8
PciI ACATGT 1 cut(s) 954
PctI GAATGC 3 cut(s) 270, 1026, 1042
PdmI GAANNNNTTC 1 cut(s) 471
PfeI GAWTC 1 cut(s) 755
PflFI GACNNNGTC 1 cut(s) 95
PscI ACATGT 1 cut(s) 954
PshBI ATTAAT 1 cut(s) 426
Psp6I CCWGG 2 cut(s) 258, 666
PspGI CCWGG 2 cut(s) 258, 666
PspN4I GGNNCC 2 cut(s) 660, 672
PspPI GGNCC 4 cut(s) 289, 527, 717, 898
PspXI VCTCGAGB 1 cut(s) 8
PsrI GAACNNNNNNTAC 2 cut(s) 44, 76
PstI CTGCAG 1 cut(s) 625
PstNI CAGNNNCTG 2 cut(s) 617, 620
PsuI RGATCY 2 cut(s) 658, 670
PsyI GACNNNGTC 1 cut(s) 95
PvuII CAGCTG 3 cut(s) 617, 626, 734
RsaI GTAC 3 cut(s) 549, 559, 1013
RsaNI GTAC 3 cut(s) 548, 558, 1012
RseI CAYNNNNRTG 2 cut(s) 275, 953
SaqAI TTAA 3 cut(s) 354, 395, 426
Sau3AI GATC 5 cut(s) 21, 202, 658, 670, 976
Sau96I GGNCC 4 cut(s) 289, 527, 717, 898
ScrFI CCNGG 2 cut(s) 260, 668
SduI GDGCHC 2 cut(s) 9, 538
SfaNI GCATC 2 cut(s) 36, 793
SfcI CTRYAG 2 cut(s) 621, 890
Sfr274I CTCGAG 1 cut(s) 8
SinI GGWCC 1 cut(s) 527
SlaI CTCGAG 1 cut(s) 8
SmiMI CAYNNNNRTG 2 cut(s) 275, 953
SmlI CTYRAG 1 cut(s) 8
SmoI CTYRAG 1 cut(s) 8
SpeI ACTAGT 1 cut(s) 197
SphI GCATGC 1 cut(s) 229
Sse9I AATT 3 cut(s) 34, 284, 427
SsiI CCGC 1 cut(s) 49
SspMI CTAG 3 cut(s) 198, 464, 992
StyD4I CCNGG 2 cut(s) 258, 666
StyI CCWWGG 1 cut(s) 159
TaaI ACNGT 4 cut(s) 145, 233, 407, 1052
TaiI ACGT 1 cut(s) 175
TaqI TCGA 3 cut(s) 9, 71, 911
TasI AATT 3 cut(s) 34, 284, 427
TatI WGTACW 2 cut(s) 547, 557
TfiI GAWTC 1 cut(s) 755
Tru1I TTAA 3 cut(s) 354, 395, 426
Tru9I TTAA 3 cut(s) 354, 395, 426
TscAI CASTG 3 cut(s) 412, 832, 955
TspDTI ATGAA 4 cut(s) 269, 375, 503, 856
TspRI CASTG 3 cut(s) 412, 832, 955
Tth111I GACNNNGTC 1 cut(s) 95
VpaK11BI GGWCC 1 cut(s) 527
VspI ATTAAT 1 cut(s) 426
XceI RCATGY 2 cut(s) 229, 958
XhoI CTCGAG 1 cut(s) 8
XmnI GAANNNNTTC 1 cut(s) 471
XspI CTAG 3 cut(s) 198, 464, 992
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.