Rw6G001780

26S proteasome non-atpase regulatory subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0001533
Physical Location & Seq
Reverse (-)
2803847 .. 2807471
3625 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G001780.1

Sequence Viewer

Length: 1212 bp
ATGGTTCTCGAGGCTACTATGATATGCGTCGACAATTCAGAATGGATGCGAAACGGTGATTACTCCCCTTCTCGGTTCCAAGCTCAAGCCGATGCTATCAATCTCATCTGTGGTGCCAAAACCCAGGCCAATCCGGAAAACACAGTTGGGGTGTTGACAATGGCGGGCAAAGGGGTTCGTGTATTGGCTACACCCACTTCTGATCTTGGCAGAATTTTGGCTTGCATGCACGGTCTTGAAATGGGGGGAGAGATGAACATAGCATCCGCAATCCAGGTAGCTCAGTTGGCTCTTAAGCACCGGCAAAACAAAAATCAACAGCAACGGATCATAGTTTTTGCTGGAAGTCCTGTCAAATTTGAAAAGAAGGTATTGGAAATGATAGGGAAGAAATTGAAGAAGAACAGTGTTGCTCTTGATATTGTTGATTTTGGCGAAGAAGATGATGGAAAGCCAGAGAAGCTGGAGGCCCTTCTTTCTGCTGTTAACAATAACGATAGTAGTCATTTAGTACATGTCCCTCCTGGTCCAGATGCTCTCTCTGATGTTCTTATAAGTACACCTGTATTCACTGGTGATGGAGAAGGAGGAAGTGGCTTTGCAGTGGCAGCCGCAGCAGCTACTGCTGCTGCAATTGGTGGTTCCTCCGGCTATGATTTTGACGTAGACCCTAATATAGATCCTGAGCTTGCTCTTGCTCTTAGAGTTTCTATGGAAGAGGAAAGGGCAAGGCAAGAAGCTGCTGCCAAAAGATCGGCTGACGAAGCTAGTAGTAGACAAGGAGAGGAACCGCCATCCAAATCAGAGGATGTAACCATGACAGAAAGTGGTGATGTTTCAGTTGTCAATGAGGATAAGAAACCTACTGATGATAAGGTTGACGAGAATGACTTGCTAAAGCAGGCTCTTGCAATGTCAATGAATATGTCTGGATCCGGTAATTCAGCAGGTGATGCTGAAATGTCAGAGGCAACTAGTGCAGATCAGGAGTTGGCTCTAGCTCTTCAAATGTCCATGCAGGAAAGTGCAGGAGAGCCATCATCCCAATCAGATATGAGCAAGGTGTTGGAGGACCAGTCTTTTCTTTCATCTATCCTTGAATCTCTTCCAGGAGTTGACCCCAATGATCCTTCAGTGAAAGAGCTTCTTGCATCTCTGAAGAATCAGTCCCAAGAAAAGGATGAAGAGGGTCCATCAAAGGAGGACAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000502 GO:0001101 GO:0001653 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0006974 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009408 GO:0009555 GO:0009628 GO:0009651 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009737 GO:0009743 GO:0009744 GO:0009791 GO:0009888 GO:0009908 GO:0009987 GO:0010015 GO:0010029 GO:0010033 GO:0010053 GO:0010054 GO:0010150 GO:0010498 GO:0016020 GO:0016043 GO:0016049 GO:0019538 GO:0019941 GO:0021700 GO:0022414 GO:0022607 GO:0022622 GO:0023052 GO:0030154 GO:0030163 GO:0031593 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0033993 GO:0034285 GO:0034622 GO:0035966 GO:0038023 GO:0040007 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043248 GO:0043632 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048364 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048468 GO:0048469 GO:0048528 GO:0048580 GO:0048588 GO:0048589 GO:0048608 GO:0048646 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051603 GO:0051716 GO:0051788 GO:0060089 GO:0060560 GO:0061458 GO:0065003 GO:0065007 GO:0071695 GO:0071704 GO:0071840 GO:0080147 GO:0090558 GO:0090567 GO:0090627 GO:0090693 GO:0090696 GO:0090697 GO:0090698 GO:0097305 GO:0099402 GO:0140030 GO:1900140 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902494 GO:1905368 GO:1905369 GO:1905392 GO:1905393 GO:2000026
KEGG Pathways
Metabolic & Signaling
ko03050 ko05169 map03050 map05169
Pfam Domains
Protein Families
UIM VWA_2

Protein Analysis

403

Amino Acids

42.67

Weight (kDa)

4.43

Isoelectric Point (pI)

48.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VWA_2 PF13519 6 - 115 3.2e-32 von Willebrand factor type A domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 554
AarI CACCTGC 1 cut(s) 938
Acc36I ACCTGC 1 cut(s) 938
AccB1I GGYRCC 1 cut(s) 113
AccI GTMKAC 3 cut(s) 30, 666, 775
AccIII TCCGGA 1 cut(s) 133
AciI CCGC 4 cut(s) 164, 267, 612, 791
AclWI GGATC 5 cut(s) 335, 674, 927, 940, 1121
AcsI RAATTY 2 cut(s) 213, 356
AcuI CTGAAG 2 cut(s) 1116, 1178
AfaI GTAC 2 cut(s) 513, 559
AfiI CCNNNNNNNGG 2 cut(s) 72, 1177
AflII CTTAAG 1 cut(s) 293
AflIII ACRYGT 1 cut(s) 514
AgsI TTSAA 5 cut(s) 239, 362, 397, 1007, 1100
AhlI ACTAGT 1 cut(s) 974
AjnI CCWGG 4 cut(s) 123, 273, 523, 1108
AjuI GAANNNNNNNTTGG 2 cut(s) 129, 161
AloI GAACNNNNNNTCC 2 cut(s) 248, 280
AluBI AGCT 9 cut(s) 83, 281, 463, 620, 688, 740, 767, 1001, 1144
AluI AGCT 9 cut(s) 83, 281, 463, 620, 688, 740, 767, 1001, 1144
AlwI GGATC 5 cut(s) 335, 674, 927, 940, 1121
AlwNI CAGNNNCTG 1 cut(s) 623
Ama87I CYCGRG 1 cut(s) 8
Aor13HI TCCGGA 1 cut(s) 133
AoxI GGCC 2 cut(s) 126, 468
ApeKI GCWGC 7 cut(s) 608, 614, 617, 626, 629, 740, 743
ApoI RAATTY 2 cut(s) 213, 356
Asp700I GAANNNNTTC 1 cut(s) 1104
AspS9I GGNCC 4 cut(s) 469, 527, 1072, 1190
AsuHPI GGTGA 4 cut(s) 68, 587, 842, 962
AvaI CYCGRG 1 cut(s) 8
AvaII GGWCC 3 cut(s) 527, 1072, 1190
BamHI GGATCC 1 cut(s) 932
BanI GGYRCC 1 cut(s) 113
BbvI GCAGC 7 cut(s) 613, 616, 620, 626, 629, 727, 730
BccI CCATC 5 cut(s) 440, 572, 802, 1045, 1201
BciT130I CCWGG 4 cut(s) 125, 275, 525, 1110
BcuI ACTAGT 1 cut(s) 974
BfaI CTAG 3 cut(s) 768, 975, 998
BfrI CTTAAG 1 cut(s) 293
BfuAI ACCTGC 1 cut(s) 938
BisI GCNGC 8 cut(s) 609, 612, 615, 618, 627, 630, 741, 744
BlsI GCNGC 8 cut(s) 610, 613, 616, 619, 628, 631, 742, 745
Bme1390I CCNGG 4 cut(s) 125, 275, 525, 1110
Bme18I GGWCC 3 cut(s) 527, 1072, 1190
BmeT110I CYCGRG 1 cut(s) 8
BmgT120I GGNCC 4 cut(s) 469, 527, 1072, 1190
BmiI GGNNCC 6 cut(s) 77, 115, 643, 789, 934, 1191
BmrFI CCNGG 4 cut(s) 125, 275, 525, 1110
BmsI GCATC 6 cut(s) 36, 82, 272, 523, 943, 1160
BpmI CTGGAG 1 cut(s) 485
Bpu10I CCTNAGC 1 cut(s) 684
BpuEI CTTGAG 1 cut(s) 69
BsaJI CCNNGG 1 cut(s) 123
BsaWI WCCGGW 2 cut(s) 133, 935
BsaXI ACNNNNNCTCC 2 cut(s) 1061, 1091
Bsc4I CCNNNNNNNGG 2 cut(s) 72, 1177
Bse118I RCCGGY 1 cut(s) 300
Bse1I ACTGG 2 cut(s) 577, 1075
Bse3DI GCAATG 1 cut(s) 918
BseAI TCCGGA 1 cut(s) 133
BseBI CCWGG 4 cut(s) 125, 275, 525, 1110
BseDI CCNNGG 1 cut(s) 123
BseGI GGATG 6 cut(s) 51, 263, 794, 814, 1040, 1186
BseLI CCNNNNNNNGG 2 cut(s) 72, 1177
BseMI GCAATG 1 cut(s) 918
BseMII CTCAG 2 cut(s) 296, 675
BseNI ACTGG 2 cut(s) 577, 1075
BseXI GCAGC 7 cut(s) 613, 616, 620, 626, 629, 727, 730
BsgI GTGCAG 2 cut(s) 999, 1047
BshFI GGCC 2 cut(s) 128, 470
BshNI GGYRCC 1 cut(s) 113
BsiHKCI CYCGRG 1 cut(s) 8
BsiSI CCGG 4 cut(s) 134, 301, 648, 936
BslFI GGGAC 2 cut(s) 503, 1153
BslI CCNNNNNNNGG 2 cut(s) 72, 1177
BsmFI GGGAC 2 cut(s) 503, 1153
BsnI GGCC 2 cut(s) 128, 470
BsoBI CYCGRG 1 cut(s) 8
Bsp13I TCCGGA 1 cut(s) 133
Bsp143I GATC 7 cut(s) 202, 327, 679, 752, 932, 982, 1126
BspACI CCGC 4 cut(s) 164, 267, 612, 791
BspANI GGCC 2 cut(s) 128, 470
BspCNI CTCAG 2 cut(s) 295, 676
BspEI TCCGGA 1 cut(s) 133
BspLI GGNNCC 6 cut(s) 77, 115, 643, 789, 934, 1191
BspMI ACCTGC 1 cut(s) 938
BspPI GGATC 5 cut(s) 335, 674, 927, 940, 1121
BspQI GCTCTTC 1 cut(s) 1008
BspT107I GGYRCC 1 cut(s) 113
BspTI CTTAAG 1 cut(s) 293
BsrDI GCAATG 1 cut(s) 918
BsrFI RCCGGY 1 cut(s) 300
BsrI ACTGG 2 cut(s) 577, 1075
BssAI RCCGGY 1 cut(s) 300
BssECI CCNNGG 1 cut(s) 123
BssMI GATC 7 cut(s) 202, 327, 679, 752, 932, 982, 1126
Bst2UI CCWGG 4 cut(s) 125, 275, 525, 1110
Bst4CI ACNGT 4 cut(s) 56, 145, 233, 407
Bst6I CTCTTC 4 cut(s) 711, 1008, 1110, 1179
BstAFI CTTAAG 1 cut(s) 293
BstAPI GCANNNNNTGC 3 cut(s) 623, 953, 977
BstC8I GCNNGC 5 cut(s) 166, 223, 227, 690, 903
BstDEI CTNAG 3 cut(s) 282, 684, 701
BstF5I GGATG 6 cut(s) 51, 263, 794, 814, 1040, 1186
BstKTI GATC 7 cut(s) 205, 330, 682, 755, 935, 985, 1129
BstMBI GATC 7 cut(s) 202, 327, 679, 752, 932, 982, 1126
BstNI CCWGG 4 cut(s) 125, 275, 525, 1110
BstNSI RCATGY 2 cut(s) 229, 518
BstSCI CCNGG 4 cut(s) 123, 273, 523, 1108
BstV1I GCAGC 7 cut(s) 613, 616, 620, 626, 629, 727, 730
BstX2I RGATCY 2 cut(s) 679, 932
BstYI RGATCY 2 cut(s) 679, 932
BsuRI GGCC 2 cut(s) 128, 470
BtsCI GGATG 6 cut(s) 51, 263, 794, 814, 1040, 1186
BtsI GCAGTG 1 cut(s) 609
BtsIMutI CAGTG 4 cut(s) 412, 570, 609, 1140
BveI ACCTGC 1 cut(s) 938
Cac8I GCNNGC 5 cut(s) 166, 223, 227, 690, 903
CaiI CAGNNNCTG 1 cut(s) 623
Cfr10I RCCGGY 1 cut(s) 300
Cfr13I GGNCC 4 cut(s) 469, 527, 1072, 1190
CseI GACGC 1 cut(s) 16
Csp6I GTAC 2 cut(s) 512, 558
CviAII CATG 4 cut(s) 226, 515, 817, 1015
CviQI GTAC 2 cut(s) 512, 558
DdeI CTNAG 3 cut(s) 282, 684, 701
DpnI GATC 7 cut(s) 204, 329, 681, 754, 934, 984, 1128
DpnII GATC 7 cut(s) 202, 327, 679, 752, 932, 982, 1126
Eam1104I CTCTTC 4 cut(s) 711, 1008, 1110, 1179
EarI CTCTTC 4 cut(s) 711, 1008, 1110, 1179
Eco47I GGWCC 3 cut(s) 527, 1072, 1190
Eco57I CTGAAG 2 cut(s) 1116, 1178
Eco88I CYCGRG 1 cut(s) 8
EcoO109I RGGNCCY 1 cut(s) 469
EcoRII CCWGG 4 cut(s) 123, 273, 523, 1108
FaeI CATG 4 cut(s) 229, 518, 820, 1018
FalI AAGNNNNNCTT 2 cut(s) 1131, 1163
FaqI GGGAC 2 cut(s) 503, 1153
FatI CATG 4 cut(s) 225, 514, 816, 1014
FauI CCCGC 1 cut(s) 157
FblI GTMKAC 3 cut(s) 30, 666, 775
Fnu4HI GCNGC 8 cut(s) 609, 612, 615, 618, 627, 630, 741, 744
FokI GGATG 6 cut(s) 58, 250, 781, 821, 1027, 1193
Fsp4HI GCNGC 8 cut(s) 609, 612, 615, 618, 627, 630, 741, 744
FspBI CTAG 3 cut(s) 768, 975, 998
GluI GCNGC 8 cut(s) 609, 612, 615, 618, 627, 630, 741, 744
GsuI CTGGAG 1 cut(s) 485
HaeIII GGCC 2 cut(s) 128, 470
HapII CCGG 4 cut(s) 134, 301, 648, 936
HgaI GACGC 1 cut(s) 16
Hin1II CATG 4 cut(s) 229, 518, 820, 1018
HincII GTYRAC 5 cut(s) 31, 156, 487, 880, 1117
HindII GTYRAC 5 cut(s) 31, 156, 487, 880, 1117
HinfI GANTC 2 cut(s) 1100, 1162
HpaI GTTAAC 1 cut(s) 487
HpaII CCGG 4 cut(s) 134, 301, 648, 936
HphI GGTGA 4 cut(s) 68, 587, 842, 962
Hpy166II GTNNAC 8 cut(s) 31, 156, 487, 560, 667, 776, 880, 1117
Hpy188I TCNGA 7 cut(s) 40, 202, 544, 805, 967, 1051, 1158
Hpy188III TCNNGA 8 cut(s) 8, 134, 236, 416, 530, 683, 930, 986
Hpy8I GTNNAC 8 cut(s) 31, 156, 487, 560, 667, 776, 880, 1117
Hpy99I CGWCG 1 cut(s) 32
HpyAV CCTTC 5 cut(s) 78, 361, 482, 578, 1140
HpyCH4III ACNGT 4 cut(s) 56, 145, 233, 407
HpyCH4IV ACGT 1 cut(s) 663
HpyCH4V TGCA 9 cut(s) 225, 229, 602, 632, 911, 980, 1018, 1028, 1151
HpyF3I CTNAG 3 cut(s) 282, 684, 701
HpySE526I ACGT 1 cut(s) 663
Hsp92II CATG 4 cut(s) 229, 518, 820, 1018
Kpn2I TCCGGA 1 cut(s) 133
KspAI GTTAAC 1 cut(s) 487
Kzo9I GATC 7 cut(s) 202, 327, 679, 752, 932, 982, 1126
LguI GCTCTTC 1 cut(s) 1008
Lsp1109I GCAGC 7 cut(s) 613, 616, 620, 626, 629, 727, 730
LweI GCATC 6 cut(s) 36, 82, 272, 523, 943, 1160
MaeI CTAG 3 cut(s) 768, 975, 998
MaeII ACGT 1 cut(s) 663
MaeIII GTNAC 1 cut(s) 811
MalI GATC 7 cut(s) 204, 329, 681, 754, 934, 984, 1128
MboI GATC 7 cut(s) 202, 327, 679, 752, 932, 982, 1126
MfeI CAATTG 1 cut(s) 633
MflI RGATCY 2 cut(s) 679, 932
MluCI AATT 6 cut(s) 34, 213, 356, 392, 633, 940
MmeI TCCRAC 1 cut(s) 1047
MroI TCCGGA 1 cut(s) 133
MroXI GAANNNNTTC 1 cut(s) 1104
MseI TTAA 2 cut(s) 294, 486
MspCI CTTAAG 1 cut(s) 293
MspI CCGG 4 cut(s) 134, 301, 648, 936
MspR9I CCNGG 4 cut(s) 125, 275, 525, 1110
MunI CAATTG 1 cut(s) 633
MvaI CCWGG 4 cut(s) 125, 275, 525, 1110
NdeII GATC 7 cut(s) 202, 327, 679, 752, 932, 982, 1126
NlaIII CATG 4 cut(s) 229, 518, 820, 1018
NlaIV GGNNCC 6 cut(s) 77, 115, 643, 789, 934, 1191
NspI RCATGY 2 cut(s) 229, 518
PaeI GCATGC 1 cut(s) 229
PaeR7I CTCGAG 1 cut(s) 8
PaqCI CACCTGC 1 cut(s) 938
PciI ACATGT 1 cut(s) 514
PciSI GCTCTTC 1 cut(s) 1008
PdmI GAANNNNTTC 1 cut(s) 1104
PfeI GAWTC 2 cut(s) 1100, 1162
PfoI TCCNGGA 1 cut(s) 1108
PkrI GCNGC 8 cut(s) 610, 613, 616, 619, 628, 631, 742, 745
PscI ACATGT 1 cut(s) 514
PsiI TTATAA 1 cut(s) 554
Psp6I CCWGG 4 cut(s) 123, 273, 523, 1108
PspGI CCWGG 4 cut(s) 123, 273, 523, 1108
PspN4I GGNNCC 6 cut(s) 77, 115, 643, 789, 934, 1191
PspPI GGNCC 4 cut(s) 469, 527, 1072, 1190
PstNI CAGNNNCTG 1 cut(s) 623
PsuI RGATCY 2 cut(s) 679, 932
RsaI GTAC 2 cut(s) 513, 559
RsaNI GTAC 2 cut(s) 512, 558
SalI GTCGAC 1 cut(s) 29
SapI GCTCTTC 1 cut(s) 1008
SaqAI TTAA 2 cut(s) 294, 486
SatI GCNGC 8 cut(s) 609, 612, 615, 618, 627, 630, 741, 744
Sau3AI GATC 7 cut(s) 202, 327, 679, 752, 932, 982, 1126
Sau96I GGNCC 4 cut(s) 469, 527, 1072, 1190
ScrFI CCNGG 4 cut(s) 125, 275, 525, 1110
SfaNI GCATC 6 cut(s) 36, 82, 272, 523, 943, 1160
Sfr274I CTCGAG 1 cut(s) 8
SinI GGWCC 3 cut(s) 527, 1072, 1190
SlaI CTCGAG 1 cut(s) 8
SmlI CTYRAG 3 cut(s) 8, 84, 293
SmoI CTYRAG 3 cut(s) 8, 84, 293
SpeI ACTAGT 1 cut(s) 974
SphI GCATGC 1 cut(s) 229
Sse9I AATT 6 cut(s) 34, 213, 356, 392, 633, 940
SsiI CCGC 4 cut(s) 164, 267, 612, 791
SspMI CTAG 3 cut(s) 768, 975, 998
StyD4I CCNGG 4 cut(s) 123, 273, 523, 1108
TaaI ACNGT 4 cut(s) 56, 145, 233, 407
TaiI ACGT 1 cut(s) 666
TaqI TCGA 2 cut(s) 9, 30
TasI AATT 6 cut(s) 34, 213, 356, 392, 633, 940
TatI WGTACW 2 cut(s) 511, 557
TauI GCSGC 1 cut(s) 614
TfiI GAWTC 2 cut(s) 1100, 1162
Tru1I TTAA 2 cut(s) 294, 486
Tru9I TTAA 2 cut(s) 294, 486
TscAI CASTG 4 cut(s) 412, 577, 609, 1140
TseI GCWGC 7 cut(s) 608, 614, 617, 626, 629, 740, 743
TspDTI ATGAA 4 cut(s) 269, 935, 1077, 1197
TspGWI ACGGA 1 cut(s) 340
TspRI CASTG 4 cut(s) 412, 577, 609, 1140
Vha464I CTTAAG 1 cut(s) 293
VpaK11BI GGWCC 3 cut(s) 527, 1072, 1190
XapI RAATTY 2 cut(s) 213, 356
XceI RCATGY 2 cut(s) 229, 518
XhoI CTCGAG 1 cut(s) 8
XmiI GTMKAC 3 cut(s) 30, 666, 775
XmnI GAANNNNTTC 1 cut(s) 1104
XspI CTAG 3 cut(s) 768, 975, 998
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.