Prupe.8G163700_v2.0.a1

Belongs to the CTL (choline transporter-like) family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
Physical Location & Seq
Forward (+)
17090597 .. 17093708
3112 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G163700.1

Sequence Viewer

Length: 1680 bp
ATGGGCAGCTCTGAAGAACCCAACAGGCCCATCTCCTTCTACGACTCGTCGTCTCCCTCCGCACCCCTCCTCTCCAAGCCCCCCAACCCAATCGACGACCCACCGCCGCCACCGCCATCCTCACCCCCGTCTTACACCGACCAACCCGATTCAGAATCCGACCCGACGCAGTATCTCCAGATCTCCTACAACCACGGCCCACGCCCTTTCAAAGACCTACCCTTTCTAATCATCTTCGTCCTTTTCGTCCTCGCCACCTTCGCCTTCGGAATCTTCTCCATCTTTCACCGGAACACAAGTTACTCCAACCTTTCCTCCTTCGTCTACGACTCTGACTCCACCTCTTGCGTCGAAAACGACACTTTGACCCATCACCCCAACTGGATCCTCCTCACTTTCTCTTCTTCCTCTTCGTCTTTTCTCAAAGATTTAACATGGACCCTCGTAATTACGTTGATTTTGAGCTTGCCCATTTGCATCAGCTTGCTGTTGCTTCTCAAGCACTACGCTAAGCAAGTTGTCTATGTCTTTCTCCCCTTCTTCATTGTGTTCCCAATTTTCTTCAACGTGTATTGGTTCGTTGCTTGTACTCTCAGCTCAACTTGCAGCGATGCATTGCCTTTACTTTACAGAATTTTGATTTTGATATTTGTGTTTTTGGTAATTGGGGTCCTTGTGTGGATACTTGTGGTCAATTGGCATCGAATTGAGCTCACTGTGAGTATAATTGGGGTGGCCTCCGATGCGCTTTCGAGGAACTTGGGTTTGTTTGGGGTCTTGCCATGTTTGACTTTGGCATTGGTGGTTTACTATGCTCCCATTGTTGTGTTCTTGGTGTTTGCGAGGTTGAATGGGAAGATTGTTCCCCGAGAATCAAACGATGTGTATACCTGTGTGTGGAAGCAAGATAGTTGGGTGCCTGCTTATTATGCATTGGCAATTCTCACTATGTTGTGGTCTCTAACGACTATGGTGGAAGCTCAGGTGTATGTGATTAGTGGGACTGTTGCTCAGTGGTACTTCACTAAGGAGGATTCAACTCCAAGGCGGATTATTAGAAGTTCTTTAAGAAATGCCTTTGGCCCCTCCTTTGGCACAGTATGTGTATCTGGATTGCTTTTAGCTGTTGTTCGAGTGGTGCGTGCCGTGGTTGATGGTGCAAGACGAGAGGGTGCACCTGGAATGGTGAATTTTGTATTACGCTGCTGTGTTAATGCCTTATTCTCAGCGATTGACTTCCTCAACAAGTTTACAATCAACTTTGCAGCAATAACTGGTGAAGCTTACTGTTCTTCTGCAAGGATGACATATGAGCTTCTAAAACGTAATCTTCTCTCTGCGGTGTTCGTAGAAACCATCTCCACTCGTCTATTGGCTGGAATTGTTTTTGTACTCTCAGCAATATATGCAATTGCGGTGTGTGCTATCTTAAAGGGCGTAAGCAATCTCGGGGTTGATTCGTACTTTGTGGCTTTGCTGGCATGGGTGCTGCTGATCTTGGTACTGGGTTTCTTTGTCCATGTGCTGGACAATGTAATTGACACCGTGTACGTGTGCTATGCCATAGATAGGGACAGAGGTGAGGTTTGTAAACAGGAAGTTCATGAGGTTTACGTTCACTTACCGATTAGTCGAAACCATAGACCATCATCTATCATCTCCAGAACTCTGGGTGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

560

Amino Acids

62.3

Weight (kDa)

6.78

Isoelectric Point (pI)

42.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 916
AccB7I CCANNNNNTGG 1 cut(s) 1525
AccI GTMKAC 2 cut(s) 324, 887
AciI CCGC 7 cut(s) 60, 104, 107, 113, 1048, 1340, 1415
AclWI GGATC 2 cut(s) 379, 392
AcsI RAATTY 2 cut(s) 633, 1189
AcuI CTGAAG 1 cut(s) 33
AfaI GTAC 6 cut(s) 589, 1019, 1392, 1463, 1503, 1550
AfiI CCNNNNNNNGG 4 cut(s) 897, 1091, 1525, 1569
AflIII ACRYGT 2 cut(s) 567, 1551
AgsI TTSAA 4 cut(s) 211, 565, 850, 1038
AhdI GACNNNNNGTC 1 cut(s) 49
AjnI CCWGG 1 cut(s) 1177
AluBI AGCT 9 cut(s) 9, 465, 483, 597, 712, 980, 1124, 1283, 1315
AluI AGCT 9 cut(s) 9, 465, 483, 597, 712, 980, 1124, 1283, 1315
Alw21I GWGCWC 2 cut(s) 714, 1177
Alw26I GTCTC 2 cut(s) 57, 963
Alw44I GTGCAC 1 cut(s) 1173
AlwI GGATC 2 cut(s) 379, 392
Ama87I CYCGRG 2 cut(s) 867, 1448
AoxI GGCC 4 cut(s) 26, 196, 735, 1081
ApaLI GTGCAC 1 cut(s) 1173
ApeKI GCWGC 5 cut(s) 6, 606, 1203, 1265, 1489
ApoI RAATTY 2 cut(s) 633, 1189
AspLEI GCGC 1 cut(s) 748
AspS9I GGNCC 5 cut(s) 27, 197, 438, 670, 1082
AsuHPI GGTGA 6 cut(s) 114, 278, 365, 1198, 1289, 1592
AvaI CYCGRG 2 cut(s) 867, 1448
AvaII GGWCC 2 cut(s) 438, 670
BaeGI GKGCMC 1 cut(s) 1177
BamHI GGATCC 1 cut(s) 384
BanI GGYRCC 1 cut(s) 916
BanII GRGCYC 1 cut(s) 714
Bbv12I GWGCWC 2 cut(s) 714, 1177
BbvI GCAGC 5 cut(s) 18, 618, 1190, 1277, 1476
BccI CCATC 7 cut(s) 38, 124, 287, 378, 1148, 1364, 1654
BceAI ACGGC 2 cut(s) 211, 1130
BciT130I CCWGG 1 cut(s) 1179
BciVI GTATCC 1 cut(s) 675
BcoDI GTCTC 2 cut(s) 57, 963
BfuI GTATCC 1 cut(s) 675
BglII AGATCT 1 cut(s) 180
BisI GCNGC 6 cut(s) 7, 107, 607, 1204, 1266, 1490
BlpI GCTNAGC 1 cut(s) 510
BlsI GCNGC 6 cut(s) 8, 108, 608, 1205, 1267, 1491
Bme1390I CCNGG 1 cut(s) 1179
Bme18I GGWCC 2 cut(s) 438, 670
BmeRI GACNNNNNGTC 1 cut(s) 49
BmeT110I CYCGRG 2 cut(s) 867, 1448
BmgT120I GGNCC 5 cut(s) 27, 197, 438, 670, 1082
BmiI GGNNCC 5 cut(s) 386, 440, 671, 918, 1084
BmrFI CCNGG 1 cut(s) 1179
BmrI ACTGGG 1 cut(s) 1514
BmsI GCATC 4 cut(s) 486, 601, 709, 733
BmuI ACTGGG 1 cut(s) 1514
BpmI CTGGAG 2 cut(s) 161, 1645
Bpu10I CCTNAGC 1 cut(s) 981
Bpu1102I GCTNAGC 1 cut(s) 510
BpuEI CTTGAG 1 cut(s) 482
BsaAI YACGTR 1 cut(s) 1552
BsaI GGTCTC 1 cut(s) 963
BsaJI CCNNGG 3 cut(s) 193, 1043, 1146
BsaWI WCCGGW 1 cut(s) 288
BsaXI ACNNNNNCTCC 4 cut(s) 299, 320, 329, 350
Bsc4I CCNNNNNNNGG 4 cut(s) 897, 1091, 1525, 1569
Bse1I ACTGG 3 cut(s) 386, 1279, 1509
Bse3DI GCAATG 1 cut(s) 614
BseBI CCWGG 1 cut(s) 1179
BseDI CCNNGG 3 cut(s) 193, 1043, 1146
BseGI GGATG 2 cut(s) 116, 1308
BseLI CCNNNNNNNGG 4 cut(s) 897, 1091, 1525, 1569
BseMI GCAATG 1 cut(s) 614
BseMII CTCAG 5 cut(s) 607, 995, 1025, 1239, 1410
BseNI ACTGG 3 cut(s) 386, 1279, 1509
BseRI GAGGAG 2 cut(s) 59, 380
BseSI GKGCMC 1 cut(s) 1177
BseXI GCAGC 5 cut(s) 18, 618, 1190, 1277, 1476
BshFI GGCC 4 cut(s) 28, 198, 737, 1083
BshNI GGYRCC 1 cut(s) 916
BsiHKAI GWGCWC 2 cut(s) 714, 1177
BsiHKCI CYCGRG 2 cut(s) 867, 1448
BsiSI CCGG 1 cut(s) 289
BslFI GGGAC 2 cut(s) 1015, 1586
BslI CCNNNNNNNGG 4 cut(s) 897, 1091, 1525, 1569
BsmAI GTCTC 2 cut(s) 57, 963
BsmBI CGTCTC 1 cut(s) 57
BsmFI GGGAC 2 cut(s) 1015, 1586
BsnI GGCC 4 cut(s) 28, 198, 737, 1083
Bso31I GGTCTC 1 cut(s) 963
BsoBI CYCGRG 2 cut(s) 867, 1448
Bsp1286I GDGCHC 2 cut(s) 714, 1177
Bsp143I GATC 3 cut(s) 180, 384, 1494
Bsp1720I GCTNAGC 1 cut(s) 510
BspACI CCGC 7 cut(s) 60, 104, 107, 113, 1048, 1340, 1415
BspANI GGCC 4 cut(s) 28, 198, 737, 1083
BspCNI CTCAG 5 cut(s) 606, 994, 1024, 1238, 1409
BspHI TCATGA 1 cut(s) 1603
BspLI GGNNCC 5 cut(s) 386, 440, 671, 918, 1084
BspPI GGATC 2 cut(s) 379, 392
BspT107I GGYRCC 1 cut(s) 916
BspTNI GGTCTC 1 cut(s) 963
BsrDI GCAATG 1 cut(s) 614
BsrI ACTGG 3 cut(s) 386, 1279, 1509
BssECI CCNNGG 3 cut(s) 193, 1043, 1146
BssMI GATC 3 cut(s) 180, 384, 1494
BssNAI GTATAC 1 cut(s) 888
BssT1I CCWWGG 1 cut(s) 1043
Bst1107I GTATAC 1 cut(s) 888
Bst2UI CCWGG 1 cut(s) 1179
Bst4CI ACNGT 5 cut(s) 718, 1006, 1099, 1289, 1546
Bst6I CTCTTC 2 cut(s) 406, 415
BstAPI GCANNNNNTGC 1 cut(s) 1406
BstBAI YACGTR 1 cut(s) 1552
BstC8I GCNNGC 5 cut(s) 467, 485, 921, 1143, 1479
BstDEI CTNAG 7 cut(s) 510, 593, 981, 1011, 1026, 1225, 1396
BstDSI CCRYGG 2 cut(s) 193, 1146
BstF5I GGATG 2 cut(s) 116, 1308
BstHHI GCGC 1 cut(s) 748
BstKTI GATC 3 cut(s) 183, 387, 1497
BstMAI GTCTC 2 cut(s) 57, 963
BstMBI GATC 3 cut(s) 180, 384, 1494
BstMWI GCNNNNNNNGC 9 cut(s) 112, 260, 499, 603, 743, 929, 1406, 1421, 1478
BstNI CCWGG 1 cut(s) 1179
BstSCI CCNGG 1 cut(s) 1177
BstSLI GKGCMC 1 cut(s) 1177
BstV1I GCAGC 5 cut(s) 18, 618, 1190, 1277, 1476
BstX2I RGATCY 2 cut(s) 180, 384
BstXI CCANNNNNNTGG 1 cut(s) 1669
BstYI RGATCY 2 cut(s) 180, 384
BstZ17I GTATAC 1 cut(s) 888
BsuI GTATCC 1 cut(s) 675
BsuRI GGCC 4 cut(s) 28, 198, 737, 1083
BtgI CCRYGG 2 cut(s) 193, 1146
BtgZI GCGATG 1 cut(s) 624
BtsCI GGATG 2 cut(s) 116, 1308
BtsIMutI CAGTG 2 cut(s) 714, 1019
Cac8I GCNNGC 5 cut(s) 467, 485, 921, 1143, 1479
CciI TCATGA 1 cut(s) 1603
CfoI GCGC 1 cut(s) 748
Cfr13I GGNCC 5 cut(s) 27, 197, 438, 670, 1082
CseI GACGC 2 cut(s) 175, 337
Csp6I GTAC 6 cut(s) 588, 1018, 1391, 1462, 1502, 1549
CviAII CATG 5 cut(s) 435, 783, 1482, 1520, 1604
CviQI GTAC 6 cut(s) 588, 1018, 1391, 1462, 1502, 1549
DdeI CTNAG 7 cut(s) 510, 593, 981, 1011, 1026, 1225, 1396
DpnI GATC 3 cut(s) 182, 386, 1496
DpnII GATC 3 cut(s) 180, 384, 1494
DriI GACNNNNNGTC 1 cut(s) 49
Eam1104I CTCTTC 2 cut(s) 406, 415
Eam1105I GACNNNNNGTC 1 cut(s) 49
EarI CTCTTC 2 cut(s) 406, 415
EciI GGCGGA 1 cut(s) 1063
Ecl136II GAGCTC 1 cut(s) 712
Eco130I CCWWGG 1 cut(s) 1043
Eco24I GRGCYC 1 cut(s) 714
Eco31I GGTCTC 1 cut(s) 963
Eco47I GGWCC 2 cut(s) 438, 670
Eco53kI GAGCTC 1 cut(s) 712
Eco57I CTGAAG 1 cut(s) 33
Eco88I CYCGRG 2 cut(s) 867, 1448
EcoICRI GAGCTC 1 cut(s) 712
EcoO109I RGGNCCY 1 cut(s) 670
EcoRII CCWGG 1 cut(s) 1177
EcoT14I CCWWGG 1 cut(s) 1043
EcoT22I ATGCAT 2 cut(s) 616, 934
EcoT38I GRGCYC 1 cut(s) 714
ErhI CCWWGG 1 cut(s) 1043
Esp3I CGTCTC 1 cut(s) 57
FaeI CATG 5 cut(s) 438, 786, 1485, 1523, 1607
FaqI GGGAC 2 cut(s) 1015, 1586
FatI CATG 5 cut(s) 434, 782, 1481, 1519, 1603
FauNDI CATATG 1 cut(s) 1309
FblI GTMKAC 2 cut(s) 324, 887
Fnu4HI GCNGC 6 cut(s) 7, 107, 607, 1204, 1266, 1490
FokI GGATG 2 cut(s) 103, 1315
FriOI GRGCYC 1 cut(s) 714
Fsp4HI GCNGC 6 cut(s) 7, 107, 607, 1204, 1266, 1490
GlaI GCGC 1 cut(s) 747
GluI GCNGC 6 cut(s) 7, 107, 607, 1204, 1266, 1490
GsuI CTGGAG 2 cut(s) 161, 1645
HaeIII GGCC 4 cut(s) 28, 198, 737, 1083
HapII CCGG 1 cut(s) 289
HgaI GACGC 2 cut(s) 175, 337
HhaI GCGC 1 cut(s) 748
Hin1II CATG 5 cut(s) 438, 786, 1485, 1523, 1607
Hin6I GCGC 1 cut(s) 746
HinP1I GCGC 1 cut(s) 746
HindIII AAGCTT 1 cut(s) 1281
HinfI GANTC 9 cut(s) 44, 149, 155, 270, 329, 335, 872, 1034, 1457
HpaII CCGG 1 cut(s) 289
HphI GGTGA 6 cut(s) 114, 278, 365, 1198, 1289, 1592
Hpy166II GTNNAC 9 cut(s) 325, 808, 888, 1175, 1251, 1549, 1592, 1612, 1618
Hpy188I TCNGA 6 cut(s) 13, 154, 160, 269, 334, 742
Hpy188III TCNNGA 4 cut(s) 178, 1110, 1604, 1662
Hpy8I GTNNAC 9 cut(s) 325, 808, 888, 1175, 1251, 1549, 1592, 1612, 1618
Hpy99I CGWCG 4 cut(s) 52, 98, 169, 353
HpyAV CCTTC 5 cut(s) 46, 268, 274, 328, 547
HpyCH4III ACNGT 5 cut(s) 718, 1006, 1099, 1289, 1546
HpyCH4IV ACGT 5 cut(s) 452, 567, 1324, 1551, 1614
HpyCH4V TGCA 9 cut(s) 477, 606, 614, 932, 1160, 1175, 1265, 1298, 1409
HpyF10VI GCNNNNNNNGC 9 cut(s) 112, 260, 499, 603, 743, 929, 1406, 1421, 1478
HpyF3I CTNAG 7 cut(s) 510, 593, 981, 1011, 1026, 1225, 1396
HpySE526I ACGT 5 cut(s) 452, 567, 1324, 1551, 1614
Hsp92II CATG 5 cut(s) 438, 786, 1485, 1523, 1607
HspAI GCGC 1 cut(s) 746
Kzo9I GATC 3 cut(s) 180, 384, 1494
LmnI GCTCC 1 cut(s) 820
Lsp1109I GCAGC 5 cut(s) 18, 618, 1190, 1277, 1476
LweI GCATC 4 cut(s) 486, 601, 709, 733
MaeII ACGT 5 cut(s) 452, 567, 1324, 1551, 1614
MaeIII GTNAC 1 cut(s) 299
MalI GATC 3 cut(s) 182, 386, 1496
MboI GATC 3 cut(s) 180, 384, 1494
MfeI CAATTG 2 cut(s) 694, 1410
MflI RGATCY 2 cut(s) 180, 384
MhlI GDGCHC 2 cut(s) 714, 1177
MlyI GAGTC 3 cut(s) 38, 323, 329
MmeI TCCRAC 2 cut(s) 183, 330
Mph1103I ATGCAT 2 cut(s) 616, 934
MseI TTAA 4 cut(s) 431, 1067, 1212, 1430
MslI CAYNNNNRTG 1 cut(s) 824
MspI CCGG 1 cut(s) 289
MspR9I CCNGG 1 cut(s) 1179
MunI CAATTG 2 cut(s) 694, 1410
MvaI CCWGG 1 cut(s) 1179
MwoI GCNNNNNNNGC 9 cut(s) 112, 260, 499, 603, 743, 929, 1406, 1421, 1478
NdeI CATATG 1 cut(s) 1309
NdeII GATC 3 cut(s) 180, 384, 1494
NlaIII CATG 5 cut(s) 438, 786, 1485, 1523, 1607
NlaIV GGNNCC 5 cut(s) 386, 440, 671, 918, 1084
NsiI ATGCAT 2 cut(s) 616, 934
PagI TCATGA 1 cut(s) 1603
PcsI WCGNNNNNNNCGW 2 cut(s) 243, 1138
PfeI GAWTC 6 cut(s) 149, 155, 270, 872, 1034, 1457
PflMI CCANNNNNTGG 1 cut(s) 1525
PkrI GCNGC 6 cut(s) 8, 108, 608, 1205, 1267, 1491
PleI GAGTC 3 cut(s) 38, 323, 329
PpsI GAGTC 3 cut(s) 38, 323, 329
Ppu21I YACGTR 1 cut(s) 1552
PpuMI RGGWCCY 1 cut(s) 670
Psp124BI GAGCTC 1 cut(s) 714
Psp5II RGGWCCY 1 cut(s) 670
Psp6I CCWGG 1 cut(s) 1177
PspGI CCWGG 1 cut(s) 1177
PspN4I GGNNCC 5 cut(s) 386, 440, 671, 918, 1084
PspPI GGNCC 5 cut(s) 27, 197, 438, 670, 1082
PspPPI RGGWCCY 1 cut(s) 670
PsrI GAACNNNNNNTAC 2 cut(s) 284, 316
PsuI RGATCY 2 cut(s) 180, 384
RsaI GTAC 6 cut(s) 589, 1019, 1392, 1463, 1503, 1550
RsaNI GTAC 6 cut(s) 588, 1018, 1391, 1462, 1502, 1549
RseI CAYNNNNRTG 1 cut(s) 824
SacI GAGCTC 1 cut(s) 714
SaqAI TTAA 4 cut(s) 431, 1067, 1212, 1430
SatI GCNGC 6 cut(s) 7, 107, 607, 1204, 1266, 1490
Sau3AI GATC 3 cut(s) 180, 384, 1494
Sau96I GGNCC 5 cut(s) 27, 197, 438, 670, 1082
SchI GAGTC 3 cut(s) 38, 323, 329
ScrFI CCNGG 1 cut(s) 1179
SduI GDGCHC 2 cut(s) 714, 1177
SfaNI GCATC 4 cut(s) 486, 601, 709, 733
SinI GGWCC 2 cut(s) 438, 670
SmiMI CAYNNNNRTG 1 cut(s) 824
SmlI CTYRAG 1 cut(s) 497
SmoI CTYRAG 1 cut(s) 497
SsiI CCGC 7 cut(s) 60, 104, 107, 113, 1048, 1340, 1415
SstI GAGCTC 1 cut(s) 714
StyD4I CCNGG 1 cut(s) 1177
StyI CCWWGG 1 cut(s) 1043
TaaI ACNGT 5 cut(s) 718, 1006, 1099, 1289, 1546
TaiI ACGT 5 cut(s) 455, 570, 1327, 1554, 1617
TaqI TCGA 6 cut(s) 93, 351, 703, 752, 1132, 1633
TatI WGTACW 2 cut(s) 587, 1390
TauI GCSGC 1 cut(s) 109
TfiI GAWTC 6 cut(s) 149, 155, 270, 872, 1034, 1457
Tru1I TTAA 4 cut(s) 431, 1067, 1212, 1430
Tru9I TTAA 4 cut(s) 431, 1067, 1212, 1430
TscAI CASTG 2 cut(s) 721, 1019
TseI GCWGC 5 cut(s) 6, 606, 1203, 1265, 1489
TspDTI ATGAA 2 cut(s) 532, 1592
TspRI CASTG 2 cut(s) 721, 1019
Van91I CCANNNNNTGG 1 cut(s) 1525
VneI GTGCAC 1 cut(s) 1173
VpaK11BI GGWCC 2 cut(s) 438, 670
XapI RAATTY 2 cut(s) 633, 1189
XcmI CCANNNNNNNNNTGG 1 cut(s) 1369
XmiI GTMKAC 2 cut(s) 324, 887
Zsp2I ATGCAT 2 cut(s) 616, 934
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.