Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007791

Physical Location & Seq

Genomic Coordinates Reverse (-)

18166538 .. 18168241

Gene Structure 1704 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G38980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGGCTGAACGAGAAGACGCAGCAGAGGTTTCTCTTTCAGTGAGAAACGAGGAAGATCTTTCTCCTGAATGTGTAGCTTGGGCTGATTCTTGCATCATCAGTTTTCTAGATGATTCAGACAACAATAATTGGGGAACTTTTAGAGATGCTTTAACAGAAATCATCGATATCCATCCCGAGATGTTTGTTTTTTCATCAACAACGGGAACAAGAGGTGTCCTGTCTCCAGACGAGGTTATGACTGAATCCGAGACTATTGATCTACGGAGATCTGAACCAGCAGCTGGTTCAGCGAACAGTAGAACTAATTCATCGAATGAAGAAGTTAGCGAGATTATCTCTATGCTAACTTTTGAATCAGACCCGTCAAAGAATTGCTTAGAAGATTATTATTTTCCAGAGTCTATAGCAGAGAATGGAAACCGTGAACCAGCGGACGGTTCTAAGACAGATCTTGGAGGTGTTGAAAGTATAGAAGAAGATGGGTCAGTGAGCAATGGAGAGGCTAAAGAAGAAAAACCAGCGTCAGTATCGTCTCAAGTATTCAAGGATGATTTCATGAGCACATACGTTGAAGACAATGCTGAGGATTGTAATGTTACAGAGGATCCTGTCAAAGTAACTTCACAAGAGATTTTCAAAGTGTGGGATCTAGAGGTTGTGGGGGACAATGATGAGGAAGATGGGTTGGTGCTGCAGCTGAAGAAGGCCCTCGATGAGTCTTCCACTGTCCAGCCCCTTCCACAGCCACTGAATGATGATCAAGTTGTATCAGAGAAGAGCAATATCGATGATCTGATATCTGGAATATCGGATCTGTCTCTTGCAGAAACTTTTAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

280

Amino Acids

30.71

Weight (kDa)

4.05

Isoelectric Point (pI)

57.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38980
fragaria_vesca	FvH4_2g10380
malus_domestica	MD00G1040100.v1.1 MD10G1063700.v1.1
prunus_persica	Prupe.8G085200_v2.0.a1 Prupe.8G085200_v2.0.a1 Prupe.8G085200_v2.0.a1 Prupe.8G085200_v2.0.a1
pyrus_communis	pycom05g04670
rosa_chinensis	RchiOBHm_Chr6g0267851
rosa_laevigata	RLG00000013977
rosa_multiflora	Rmu_sc0005400.1_g000020
rosa_roxburghii	Rroxscaffold_7G00200440 Rroxscaffold_7G00200450
rosa_rugosa	Rorug06G0034400 Rorug06G0034500
rosa_samantha	Rh6AG156300 Rh6AG156400 Rh6BG157400 Rh6CG158600 Rh6DG142500 Rh6DG142600
rosa_wichuraiana	Rw6G013430 Rw6G013570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	284
AciI	CCGC	1 cut(s)	434
AclWI	GGATC	4 cut(s)	602, 615, 657, 822
AcuI	CTGAAG	1 cut(s)	722
AfiI	CCNNNNNNNGG	2 cut(s)	284, 437
AgsI	TTSAA	5 cut(s)	356, 467, 547, 575, 640
AluBI	AGCT	3 cut(s)	77, 284, 700
AluI	AGCT	3 cut(s)	77, 284, 700
Alw21I	GWGCWC	1 cut(s)	566
Alw26I	GTCTC	4 cut(s)	228, 245, 540, 825
AlwI	GGATC	4 cut(s)	602, 615, 657, 822
AlwNI	CAGNNNCTG	2 cut(s)	284, 751
Ama87I	CYCGRG	1 cut(s)	176
AoxI	GGCC	1 cut(s)	708
ApeKI	GCWGC	4 cut(s)	20, 281, 694, 697
Asp700I	GAANNNNTTC	1 cut(s)	307
AspS9I	GGNCC	1 cut(s)	709
AvaI	CYCGRG	1 cut(s)	176
BamHI	GGATCC	1 cut(s)	607
BbsI	GAAGAC	3 cut(s)	21, 582, 714
Bbv12I	GWGCWC	1 cut(s)	566
BbvCI	CCTCAGC	1 cut(s)	585
BbvI	GCAGC	4 cut(s)	32, 293, 681, 709
BccI	CCATC	3 cut(s)	180, 476, 677
BclI	TGATCA	1 cut(s)	760
BcoDI	GTCTC	4 cut(s)	228, 245, 540, 825
BfaI	CTAG	2 cut(s)	107, 653
BfmI	CTRYAG	2 cut(s)	405, 695
BglII	AGATCT	3 cut(s)	55, 269, 451
BisI	GCNGC	4 cut(s)	21, 282, 695, 698
BlsI	GCNGC	4 cut(s)	22, 283, 696, 699
BmeT110I	CYCGRG	1 cut(s)	176
BmgT120I	GGNCC	1 cut(s)	709
BmiI	GGNNCC	1 cut(s)	609
BmsI	GCATC	2 cut(s)	102, 136
BpiI	GAAGAC	3 cut(s)	21, 582, 714
BplI	GAGNNNNNCTC	2 cut(s)	323, 355
BpmI	CTGGAG	1 cut(s)	210
Bpu10I	CCTNAGC	1 cut(s)	585
BpuEI	CTTGAG	1 cut(s)	522
Bsa29I	ATCGAT	2 cut(s)	165, 789
BsaBI	GATNNNNATC	1 cut(s)	171
Bsc4I	CCNNNNNNNGG	2 cut(s)	284, 437
Bse3DI	GCAATG	1 cut(s)	502
Bse8I	GATNNNNATC	1 cut(s)	171
BseCI	ATCGAT	2 cut(s)	165, 789
BseGI	GGATG	2 cut(s)	172, 556
BseJI	GATNNNNATC	1 cut(s)	171
BseLI	CCNNNNNNNGG	2 cut(s)	284, 437
BseMI	GCAATG	1 cut(s)	502
BseMII	CTCAG	1 cut(s)	576
BseXI	GCAGC	4 cut(s)	32, 293, 681, 709
BshFI	GGCC	1 cut(s)	710
BshVI	ATCGAT	2 cut(s)	165, 789
BsiHKAI	GWGCWC	1 cut(s)	566
BsiHKCI	CYCGRG	1 cut(s)	176
BslFI	GGGAC	1 cut(s)	680
BslI	CCNNNNNNNGG	2 cut(s)	284, 437
BsmAI	GTCTC	4 cut(s)	228, 245, 540, 825
BsmBI	CGTCTC	1 cut(s)	540
BsmFI	GGGAC	1 cut(s)	680
BsnI	GGCC	1 cut(s)	710
BsoBI	CYCGRG	1 cut(s)	176
Bsp1286I	GDGCHC	1 cut(s)	566
Bsp143I	GATC	9 cut(s)	55, 259, 269, 451, 607, 649, 760, 793, 814
BspACI	CCGC	1 cut(s)	434
BspANI	GGCC	1 cut(s)	710
BspCNI	CTCAG	1 cut(s)	577
BspDI	ATCGAT	2 cut(s)	165, 789
BspHI	TCATGA	1 cut(s)	558
BspLI	GGNNCC	1 cut(s)	609
BspMAI	CTGCAG	1 cut(s)	699
BspPI	GGATC	4 cut(s)	602, 615, 657, 822
BspQI	GCTCTTC	1 cut(s)	773
BsrDI	GCAATG	1 cut(s)	502
BssMI	GATC	9 cut(s)	55, 259, 269, 451, 607, 649, 760, 793, 814
Bst4CI	ACNGT	4 cut(s)	299, 425, 440, 730
Bst6I	CTCTTC	1 cut(s)	773
BstDEI	CTNAG	3 cut(s)	379, 444, 585
BstF5I	GGATG	2 cut(s)	172, 556
BstKTI	GATC	9 cut(s)	58, 262, 272, 454, 610, 652, 763, 796, 817
BstMAI	GTCTC	4 cut(s)	228, 245, 540, 825
BstMBI	GATC	9 cut(s)	55, 259, 269, 451, 607, 649, 760, 793, 814
BstMWI	GCNNNNNNNGC	1 cut(s)	290
BstSFI	CTRYAG	2 cut(s)	405, 695
BstV1I	GCAGC	4 cut(s)	32, 293, 681, 709
BstV2I	GAAGAC	3 cut(s)	21, 582, 714
BstX2I	RGATCY	6 cut(s)	55, 269, 451, 607, 649, 814
BstYI	RGATCY	6 cut(s)	55, 269, 451, 607, 649, 814
Bsu15I	ATCGAT	2 cut(s)	165, 789
BsuRI	GGCC	1 cut(s)	710
BsuTUI	ATCGAT	2 cut(s)	165, 789
BtsCI	GGATG	2 cut(s)	172, 556
BtsIMutI	CAGTG	4 cut(s)	45, 495, 726, 749
CaiI	CAGNNNCTG	2 cut(s)	284, 751
CciI	TCATGA	1 cut(s)	558
Cfr13I	GGNCC	1 cut(s)	709
ClaI	ATCGAT	2 cut(s)	165, 789
CseI	GACGC	2 cut(s)	26, 513
CviAII	CATG	1 cut(s)	559
CviJI	RGCY	9 cut(s)	5, 77, 83, 284, 506, 700, 710, 736, 748
CviKI_1	RGCY	9 cut(s)	5, 77, 83, 284, 506, 700, 710, 736, 748
DdeI	CTNAG	3 cut(s)	379, 444, 585
DpnI	GATC	9 cut(s)	57, 261, 271, 453, 609, 651, 762, 795, 816
DpnII	GATC	9 cut(s)	55, 259, 269, 451, 607, 649, 760, 793, 814
Eam1104I	CTCTTC	1 cut(s)	773
EarI	CTCTTC	1 cut(s)	773
Eco32I	GATATC	2 cut(s)	169, 801
Eco57I	CTGAAG	1 cut(s)	722
Eco88I	CYCGRG	1 cut(s)	176
EcoO109I	RGGNCCY	1 cut(s)	709
EcoRV	GATATC	2 cut(s)	169, 801
Esp3I	CGTCTC	1 cut(s)	540
FaeI	CATG	1 cut(s)	562
FaiI	YATR	6 cut(s)	239, 344, 407, 473, 560, 568
FalI	AAGNNNNNCTT	2 cut(s)	362, 394
FaqI	GGGAC	1 cut(s)	680
FatI	CATG	1 cut(s)	558
FbaI	TGATCA	1 cut(s)	760
Fnu4HI	GCNGC	4 cut(s)	21, 282, 695, 698
FokI	GGATG	2 cut(s)	159, 563
Fsp4HI	GCNGC	4 cut(s)	21, 282, 695, 698
FspBI	CTAG	2 cut(s)	107, 653
GluI	GCNGC	4 cut(s)	21, 282, 695, 698
GsuI	CTGGAG	1 cut(s)	210
HaeIII	GGCC	1 cut(s)	710
HgaI	GACGC	2 cut(s)	26, 513
Hin1II	CATG	1 cut(s)	562
HinfI	GANTC	6 cut(s)	86, 113, 245, 356, 401, 719
Hpy166II	GTNNAC	1 cut(s)	428
Hpy188I	TCNGA	7 cut(s)	118, 250, 274, 361, 775, 798, 814
Hpy188III	TCNNGA	8 cut(s)	65, 107, 176, 227, 398, 559, 653, 804
Hpy8I	GTNNAC	1 cut(s)	428
HpyAV	CCTTC	2 cut(s)	700, 749
HpyCH4III	ACNGT	4 cut(s)	299, 425, 440, 730
HpyCH4IV	ACGT	1 cut(s)	570
HpyCH4V	TGCA	3 cut(s)	93, 697, 827
HpyF10VI	GCNNNNNNNGC	1 cut(s)	290
HpyF3I	CTNAG	3 cut(s)	379, 444, 585
HpySE526I	ACGT	1 cut(s)	570
Hsp92II	CATG	1 cut(s)	562
Ksp22I	TGATCA	1 cut(s)	760
Kzo9I	GATC	9 cut(s)	55, 259, 269, 451, 607, 649, 760, 793, 814
LguI	GCTCTTC	1 cut(s)	773
Lsp1109I	GCAGC	4 cut(s)	32, 293, 681, 709
LweI	GCATC	2 cut(s)	102, 136
MaeI	CTAG	2 cut(s)	107, 653
MaeII	ACGT	1 cut(s)	570
MaeIII	GTNAC	2 cut(s)	598, 619
MalI	GATC	9 cut(s)	57, 261, 271, 453, 609, 651, 762, 795, 816
MboI	GATC	9 cut(s)	55, 259, 269, 451, 607, 649, 760, 793, 814
MflI	RGATCY	6 cut(s)	55, 269, 451, 607, 649, 814
MhlI	GDGCHC	1 cut(s)	566
MluCI	AATT	3 cut(s)	127, 307, 373
MlyI	GAGTC	2 cut(s)	410, 728
MroXI	GAANNNNTTC	1 cut(s)	307
MseI	TTAA	2 cut(s)	152, 837
MspA1I	CMGCKG	3 cut(s)	284, 434, 700
MwoI	GCNNNNNNNGC	1 cut(s)	290
NdeII	GATC	9 cut(s)	55, 259, 269, 451, 607, 649, 760, 793, 814
NlaIII	CATG	1 cut(s)	562
NlaIV	GGNNCC	1 cut(s)	609
PagI	TCATGA	1 cut(s)	558
PciSI	GCTCTTC	1 cut(s)	773
PdmI	GAANNNNTTC	1 cut(s)	307
PfeI	GAWTC	4 cut(s)	86, 113, 245, 356
PflMI	CCANNNNNTGG	1 cut(s)	284
PkrI	GCNGC	4 cut(s)	22, 283, 696, 699
PleI	GAGTC	2 cut(s)	409, 727
PpsI	GAGTC	2 cut(s)	409, 727
PspN4I	GGNNCC	1 cut(s)	609
PspPI	GGNCC	1 cut(s)	709
PstI	CTGCAG	1 cut(s)	699
PstNI	CAGNNNCTG	2 cut(s)	284, 751
PsuI	RGATCY	6 cut(s)	55, 269, 451, 607, 649, 814
PvuII	CAGCTG	2 cut(s)	284, 700
SapI	GCTCTTC	1 cut(s)	773
SaqAI	TTAA	2 cut(s)	152, 837
SatI	GCNGC	4 cut(s)	21, 282, 695, 698
Sau3AI	GATC	9 cut(s)	55, 259, 269, 451, 607, 649, 760, 793, 814
Sau96I	GGNCC	1 cut(s)	709
SchI	GAGTC	2 cut(s)	410, 728
SduI	GDGCHC	1 cut(s)	566
SetI	ASST	9 cut(s)	30, 79, 217, 237, 286, 463, 573, 660, 702
SfaNI	GCATC	2 cut(s)	102, 136
SfcI	CTRYAG	2 cut(s)	405, 695
SmlI	CTYRAG	1 cut(s)	537
SmoI	CTYRAG	1 cut(s)	537
Sse9I	AATT	3 cut(s)	127, 307, 373
SsiI	CCGC	1 cut(s)	434
SspMI	CTAG	2 cut(s)	107, 653
TaaI	ACNGT	4 cut(s)	299, 425, 440, 730
TaiI	ACGT	1 cut(s)	573
TaqI	TCGA	4 cut(s)	165, 314, 714, 789
TasI	AATT	3 cut(s)	127, 307, 373
TfiI	GAWTC	4 cut(s)	86, 113, 245, 356
Tru1I	TTAA	2 cut(s)	152, 837
Tru9I	TTAA	2 cut(s)	152, 837
TscAI	CASTG	4 cut(s)	45, 495, 733, 756
TseI	GCWGC	4 cut(s)	20, 281, 694, 697
TspDTI	ATGAA	4 cut(s)	183, 300, 333, 547
TspGWI	ACGGA	1 cut(s)	280
TspRI	CASTG	4 cut(s)	45, 495, 733, 756
Van91I	CCANNNNNTGG	1 cut(s)	284
XbaI	TCTAGA	2 cut(s)	106, 652
XmnI	GAANNNNTTC	1 cut(s)	307
XspI	CTAG	2 cut(s)	107, 653

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.