Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0007791

Physical Location & Seq

Genomic Coordinates Reverse (-)

6827509 .. 6829702

Gene Structure 2194 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1040100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGGCACAAGCCATGGATGTTGGAGATGAAGTGATTGAAGGCACTATTCAGTCTCTTATCATGGATTCCCTAGAGTCTTTTAAAAAAGGCGAGGTACTTTCTCCAGAGGATGATGCTTGGGTTGATTCGTGCCTGATTAACGAATTTGATGTTTTCGATGACAACTGGGACTCTTTGAAAGGTGCCTTACAAGAAATCCTTGGTTCTCAGCCGCCTGAATCACTCAGCTCTTCTTCACTTGTAACTGATGGTTTAACCAGGGGAACTGACATCGTGATACTTCCATCTCGTGAGCGGGCAGAAACAAAACAACTCCGAAGAAGAATCCGAAATGCTGTTCTTAGTATTGGTGAAGAAGCAGAAAGAAGTGATGAAGATGATGATGACGACATGCCAACTGATGAGGATATGAATAATTTGCAGTCATCAACTTTTACGGGAAATCCATTTTTGCCAGGATACAAAGATGACCCGAGAATGACGGAAAACCTCGAGTTAGGAGCCGATATCAGCTCTTCGTTATCTGAGATGGAGCCTTCAACTAAGGATATTTTCAGGGTTTGGGATTTGGATGTTCCTGTGGAGGAAGACGACGACCTGGTAAAGCAGTTGAACAAGGCCCTCGAAGAAAGTTTGCCTCAACCGGTCCCATCAACTTTTGATGACTCTGATGTATGGAAAAGTATGAAAGTAGATTCGGTTGATGATCTAGTTTTTGGGCTTGCAGATCTATCTTTGGATCTCAACTCTAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

252

Amino Acids

27.86

Weight (kDa)

4.05

Isoelectric Point (pI)

64.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38980
fragaria_vesca	FvH4_2g10380
malus_domestica	MD00G1040100.v1.1 MD10G1063700.v1.1
prunus_persica	Prupe.8G085200_v2.0.a1 Prupe.8G085200_v2.0.a1 Prupe.8G085200_v2.0.a1 Prupe.8G085200_v2.0.a1
pyrus_communis	pycom05g04670
rosa_chinensis	RchiOBHm_Chr6g0267851
rosa_laevigata	RLG00000013977
rosa_multiflora	Rmu_sc0005400.1_g000020
rosa_roxburghii	Rroxscaffold_7G00200440 Rroxscaffold_7G00200450
rosa_rugosa	Rorug06G0034400 Rorug06G0034500
rosa_samantha	Rh6AG156300 Rh6AG156400 Rh6BG157400 Rh6CG158600 Rh6DG142500 Rh6DG142600
rosa_wichuraiana	Rw6G013430 Rw6G013570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	182
AccBSI	CCGCTC	1 cut(s)	295
AciI	CCGC	2 cut(s)	212, 295
AclWI	GGATC	1 cut(s)	747
AcsI	RAATTY	1 cut(s)	143
AfaI	GTAC	1 cut(s)	96
AgeI	ACCGGT	1 cut(s)	643
AgsI	TTSAA	4 cut(s)	38, 178, 540, 613
AjnI	CCWGG	3 cut(s)	257, 454, 597
AluBI	AGCT	2 cut(s)	228, 513
AluI	AGCT	2 cut(s)	228, 513
Alw26I	GTCTC	1 cut(s)	57
AlwI	GGATC	1 cut(s)	747
Ama87I	CYCGRG	2 cut(s)	472, 491
AoxI	GGCC	1 cut(s)	618
ApoI	RAATTY	1 cut(s)	143
AsiGI	ACCGGT	1 cut(s)	643
AspS9I	GGNCC	2 cut(s)	619, 646
AsuHPI	GGTGA	1 cut(s)	362
AvaI	CYCGRG	2 cut(s)	472, 491
AvaII	GGWCC	1 cut(s)	646
BanI	GGYRCC	1 cut(s)	182
BauI	CACGAG	1 cut(s)	288
BbsI	GAAGAC	1 cut(s)	594
BccI	CCATC	4 cut(s)	242, 292, 523, 658
BciT130I	CCWGG	3 cut(s)	259, 456, 599
BciVI	GTATCC	1 cut(s)	452
BcoDI	GTCTC	1 cut(s)	57
BfaI	CTAG	3 cut(s)	71, 710, 750
BfuI	GTATCC	1 cut(s)	452
BglII	AGATCT	1 cut(s)	727
BisI	GCNGC	1 cut(s)	212
BlsI	GCNGC	1 cut(s)	213
Bme1390I	CCNGG	3 cut(s)	259, 456, 599
Bme18I	GGWCC	1 cut(s)	646
BmeT110I	CYCGRG	2 cut(s)	472, 491
BmgT120I	GGNCC	2 cut(s)	619, 646
BmiI	GGNNCC	4 cut(s)	184, 502, 534, 648
BmrFI	CCNGG	3 cut(s)	259, 456, 599
BmrI	ACTGGG	1 cut(s)	175
BmsI	GCATC	1 cut(s)	103
BmuI	ACTGGG	1 cut(s)	175
BpiI	GAAGAC	1 cut(s)	594
BpmI	CTGGAG	1 cut(s)	87
BsaJI	CCNNGG	3 cut(s)	12, 199, 258
BsaWI	WCCGGW	1 cut(s)	643
BsaXI	ACNNNNNCTCC	2 cut(s)	15, 45
Bse118I	RCCGGY	1 cut(s)	643
Bse1I	ACTGG	1 cut(s)	170
BseBI	CCWGG	3 cut(s)	259, 456, 599
BseDI	CCNNGG	3 cut(s)	12, 199, 258
BseGI	GGATG	3 cut(s)	22, 115, 577
BseMII	CTCAG	3 cut(s)	221, 238, 516
BseNI	ACTGG	1 cut(s)	170
BshFI	GGCC	1 cut(s)	620
BshNI	GGYRCC	1 cut(s)	182
BshTI	ACCGGT	1 cut(s)	643
BsiHKCI	CYCGRG	2 cut(s)	472, 491
BsiSI	CCGG	1 cut(s)	644
BslFI	GGGAC	2 cut(s)	182, 632
BsmAI	GTCTC	1 cut(s)	57
BsmFI	GGGAC	2 cut(s)	182, 632
BsnI	GGCC	1 cut(s)	620
BsoBI	CYCGRG	2 cut(s)	472, 491
Bsp143I	GATC	3 cut(s)	706, 727, 739
Bsp19I	CCATGG	1 cut(s)	12
BspACI	CCGC	2 cut(s)	212, 295
BspANI	GGCC	1 cut(s)	620
BspCNI	CTCAG	3 cut(s)	220, 237, 517
BspLI	GGNNCC	4 cut(s)	184, 502, 534, 648
BspPI	GGATC	1 cut(s)	747
BspQI	GCTCTTC	2 cut(s)	235, 520
BspT107I	GGYRCC	1 cut(s)	182
BsrBI	CCGCTC	1 cut(s)	295
BsrFI	RCCGGY	1 cut(s)	643
BsrI	ACTGG	1 cut(s)	170
BssAI	RCCGGY	1 cut(s)	643
BssECI	CCNNGG	3 cut(s)	12, 199, 258
BssMI	GATC	3 cut(s)	706, 727, 739
BssSI	CACGAG	1 cut(s)	288
BssT1I	CCWWGG	2 cut(s)	12, 199
Bst2BI	CACGAG	1 cut(s)	288
Bst2UI	CCWGG	3 cut(s)	259, 456, 599
Bst6I	CTCTTC	2 cut(s)	235, 520
BstC8I	GCNNGC	2 cut(s)	297, 723
BstDEI	CTNAG	5 cut(s)	207, 224, 341, 525, 543
BstDSI	CCRYGG	1 cut(s)	12
BstF5I	GGATG	3 cut(s)	22, 115, 577
BstKTI	GATC	3 cut(s)	709, 730, 742
BstMAI	GTCTC	1 cut(s)	57
BstMBI	GATC	3 cut(s)	706, 727, 739
BstNI	CCWGG	3 cut(s)	259, 456, 599
BstNSI	RCATGY	1 cut(s)	394
BstSCI	CCNGG	3 cut(s)	257, 454, 597
BstV2I	GAAGAC	1 cut(s)	594
BstX2I	RGATCY	2 cut(s)	727, 739
BstYI	RGATCY	2 cut(s)	727, 739
BsuI	GTATCC	1 cut(s)	452
BsuRI	GGCC	1 cut(s)	620
BtgI	CCRYGG	1 cut(s)	12
BtsCI	GGATG	3 cut(s)	22, 115, 577
Cac8I	GCNNGC	2 cut(s)	297, 723
Cfr10I	RCCGGY	1 cut(s)	643
Cfr13I	GGNCC	2 cut(s)	619, 646
CsiI	ACCWGGT	1 cut(s)	597
Csp6I	GTAC	1 cut(s)	95
CspAI	ACCGGT	1 cut(s)	643
CviAII	CATG	3 cut(s)	13, 61, 391
CviJI	RGCY	8 cut(s)	11, 211, 228, 503, 513, 535, 620, 721
CviKI_1	RGCY	8 cut(s)	11, 211, 228, 503, 513, 535, 620, 721
CviQI	GTAC	1 cut(s)	95
DdeI	CTNAG	5 cut(s)	207, 224, 341, 525, 543
DpnI	GATC	3 cut(s)	708, 729, 741
DpnII	GATC	3 cut(s)	706, 727, 739
DraI	TTTAAA	1 cut(s)	82
Eam1104I	CTCTTC	2 cut(s)	235, 520
EarI	CTCTTC	2 cut(s)	235, 520
Eco130I	CCWWGG	2 cut(s)	12, 199
Eco32I	GATATC	1 cut(s)	508
Eco47I	GGWCC	1 cut(s)	646
Eco88I	CYCGRG	2 cut(s)	472, 491
EcoO109I	RGGNCCY	1 cut(s)	619
EcoRII	CCWGG	3 cut(s)	257, 454, 597
EcoRV	GATATC	1 cut(s)	508
EcoT14I	CCWWGG	2 cut(s)	12, 199
ErhI	CCWWGG	2 cut(s)	12, 199
FaeI	CATG	3 cut(s)	16, 64, 394
FaiI	YATR	6 cut(s)	14, 62, 392, 410, 676, 686
FalI	AAGNNNNNCTT	2 cut(s)	183, 215
FaqI	GGGAC	2 cut(s)	182, 632
FatI	CATG	3 cut(s)	12, 60, 390
FauI	CCCGC	1 cut(s)	288
Fnu4HI	GCNGC	1 cut(s)	212
FokI	GGATG	3 cut(s)	29, 122, 584
Fsp4HI	GCNGC	1 cut(s)	212
FspBI	CTAG	3 cut(s)	71, 710, 750
GluI	GCNGC	1 cut(s)	212
GsuI	CTGGAG	1 cut(s)	87
HaeIII	GGCC	1 cut(s)	620
HapII	CCGG	1 cut(s)	644
Hin1II	CATG	3 cut(s)	16, 64, 394
HinfI	GANTC	8 cut(s)	65, 74, 125, 170, 218, 324, 665, 695
HpaII	CCGG	1 cut(s)	644
HphI	GGTGA	1 cut(s)	362
Hpy188I	TCNGA	4 cut(s)	317, 329, 526, 670
Hpy188III	TCNNGA	3 cut(s)	104, 274, 290
Hpy99I	CGWCG	1 cut(s)	596
HpyAV	CCTTC	2 cut(s)	32, 546
HpyCH4V	TGCA	2 cut(s)	421, 725
HpyF3I	CTNAG	5 cut(s)	207, 224, 341, 525, 543
Hsp92II	CATG	3 cut(s)	16, 64, 394
Kzo9I	GATC	3 cut(s)	706, 727, 739
LguI	GCTCTTC	2 cut(s)	235, 520
LmnI	GCTCC	2 cut(s)	500, 532
LweI	GCATC	1 cut(s)	103
MabI	ACCWGGT	1 cut(s)	597
MaeI	CTAG	3 cut(s)	71, 710, 750
MaeIII	GTNAC	1 cut(s)	241
MalI	GATC	3 cut(s)	708, 729, 741
MbiI	CCGCTC	1 cut(s)	295
MboI	GATC	3 cut(s)	706, 727, 739
MboII	GAAGA	9 cut(s)	222, 225, 330, 333, 365, 386, 507, 599, 638
MflI	RGATCY	2 cut(s)	727, 739
MluCI	AATT	2 cut(s)	143, 415
MlyI	GAGTC	3 cut(s)	83, 164, 659
MnlI	CCTC	7 cut(s)	85, 100, 397, 500, 577, 632, 648
MseI	TTAA	4 cut(s)	81, 138, 254, 754
MspI	CCGG	1 cut(s)	644
MspR9I	CCNGG	3 cut(s)	259, 456, 599
MvaI	CCWGG	3 cut(s)	259, 456, 599
NcoI	CCATGG	1 cut(s)	12
NdeII	GATC	3 cut(s)	706, 727, 739
NlaIII	CATG	3 cut(s)	16, 64, 394
NlaIV	GGNNCC	4 cut(s)	184, 502, 534, 648
NspI	RCATGY	1 cut(s)	394
PaeR7I	CTCGAG	1 cut(s)	491
PciSI	GCTCTTC	2 cut(s)	235, 520
PfeI	GAWTC	5 cut(s)	65, 125, 218, 324, 695
PinAI	ACCGGT	1 cut(s)	643
PkrI	GCNGC	1 cut(s)	213
PleI	GAGTC	3 cut(s)	82, 164, 659
PpsI	GAGTC	3 cut(s)	82, 164, 659
Psp6I	CCWGG	3 cut(s)	257, 454, 597
PspGI	CCWGG	3 cut(s)	257, 454, 597
PspN4I	GGNNCC	4 cut(s)	184, 502, 534, 648
PspPI	GGNCC	2 cut(s)	619, 646
PspXI	VCTCGAGB	1 cut(s)	491
PsuI	RGATCY	2 cut(s)	727, 739
RsaI	GTAC	1 cut(s)	96
RsaNI	GTAC	1 cut(s)	95
SapI	GCTCTTC	2 cut(s)	235, 520
SaqAI	TTAA	4 cut(s)	81, 138, 254, 754
SatI	GCNGC	1 cut(s)	212
Sau3AI	GATC	3 cut(s)	706, 727, 739
Sau96I	GGNCC	2 cut(s)	619, 646
SchI	GAGTC	3 cut(s)	83, 164, 659
ScrFI	CCNGG	3 cut(s)	259, 456, 599
SetI	ASST	6 cut(s)	96, 184, 230, 492, 515, 600
SexAI	ACCWGGT	1 cut(s)	597
SfaNI	GCATC	1 cut(s)	103
Sfr274I	CTCGAG	1 cut(s)	491
SinI	GGWCC	1 cut(s)	646
SlaI	CTCGAG	1 cut(s)	491
SmlI	CTYRAG	1 cut(s)	491
SmoI	CTYRAG	1 cut(s)	491
Sse9I	AATT	2 cut(s)	143, 415
SsiI	CCGC	2 cut(s)	212, 295
SspMI	CTAG	3 cut(s)	71, 710, 750
StyD4I	CCNGG	3 cut(s)	257, 454, 597
StyI	CCWWGG	2 cut(s)	12, 199
TaqI	TCGA	3 cut(s)	156, 492, 624
TasI	AATT	2 cut(s)	143, 415
TauI	GCSGC	1 cut(s)	214
TfiI	GAWTC	5 cut(s)	65, 125, 218, 324, 695
Tru1I	TTAA	4 cut(s)	81, 138, 254, 754
Tru9I	TTAA	4 cut(s)	81, 138, 254, 754
TspDTI	ATGAA	4 cut(s)	42, 387, 425, 701
TspGWI	ACGGA	1 cut(s)	497
VpaK11BI	GGWCC	1 cut(s)	646
XapI	RAATTY	1 cut(s)	143
XceI	RCATGY	1 cut(s)	394
XhoI	CTCGAG	1 cut(s)	491
XspI	CTAG	3 cut(s)	71, 710, 750

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.